XLOC_001088 (gene) - C. hemisphaerica

Overview
NameXLOC_001088
Unique NameXLOC_001088
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000018:811203..816885+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_001088 ID=XLOC_001088|Name=XLOC_001088|organism=Clytia hemisphaerica|type=gene|length=5683bp|location=Sequence derived from alignment at sc0000018:811203..816885+ (Clytia hemisphaerica)
TTAGGCTGACTTACAACGAGAAGGAAGATCGAATGGAAAATACTGAAGGT
GTTTTCACCAGAATTCCTGGGTTTGGAAACACATCTGGCNAAGGCATTGT
TCTTGTTTAGGCTGACTTACAACGAGAAGGAAGATCGAATGGAAAATACT
GAAGGTGTTTTCACCAGAATTCCTGGGTTTGGAAACACATCTGGCATCGA
ATGGCTGGATCCTTATGTGCATGGACCTGGTATCTACTTCTTCCCTTTGG
TGGATTCATTAACCAGATTGCTGGGTTATGAGCGTGGAAAAACTTTACGA
TCTGCTCCGTATGACTTCCGCTACCATCCTGGTAAGATGTTATTCATTTA
CTTCATCTTTTCTTCTAGTTGGGAttttttaatggattttttGTATGTGA
CTGTATGGTTTATTATGAGtgtcaattttcttgaaaatcatTGTTACATG
ATGATACATCAAATCGGCGACcattaaattgttttaaaagaattttgtaT
AAGGCTTATTTTGATATGACATTTAGATAgcaataagaaaatttgaaatt
cgaaaTCTTTCAGGAGATGCTGGTGATTATTTTGATCGtttgaagaagtt
gattgaAGAGACGTACATGATGAATGGAGAGAAGAAGATTATGTTGCTTT
CTCATAGCATGGGTGTTCCTTACTCCCTCAACTTTCTTCATCGACAAACT
GAAGaatggaaagaaaaatatatcgTGGCATGGACCACTATTTCTGGTAT
GAACAGTTCCACTTTTATTTGATGTTCGCcacttttatttgaaatattga
aagttCTTTCGTCTCAGACGTATTGTAAATAGGCTTTTCTAAAGCTTCAA
GAATGTGCTAATTTGTTGTgtaaaaattttgctttgatcactgtattcat
gatatgcaccattgcaatgtcatccgttccacccaatagctgattggttg
aaagtgacgtattgactgcttttacgtcacttccaaccaatgagctattg
gttccatgacgtaatgtcagaagacattgcactggtgcatatcatgaata
tcatgttCATTCATAAACAAAAACAGATGAACTTATTCGTTACAGTGGCT
TCTAGCTATTATAAAGATTGGCTCATACTCTTCTGCTTATTTCTTCCTCG
TCTTGGTGGTCCAGGTCTTAAACATGATGACATCATAACCTTTCCCACGT
GGCATTAGTGTATTACAAAGAGGATATTATTTTAGTGTTGAAGAAGGATT
AACCTCGAATTTTGTTGGATCTAACCGCATGCAATGTAGCTTCCTCAAAT
TTTGTAATgtaatctattcatgatatacacaattgcaatgtcttctgaca
ttacatcacggacccaattagctgattggttgtaagtgacgtaaaatcag
tcaatacgtcaccttcaaccaatcagctgttgggtccgtggaagacattg
caatggtgcatatcatgaattcagcTTGCCTTCTCGCACATGCgtggtcg
ttacttgaccttgGGTAATATTTCTCAATACACCCCTCACTAactggtca
ttattgtattagtgtATATTCTTTTTAGGTGTATTCGGAGGTTCTATGAA
AGCTGTGAAAGCGTTCATATCTGGTGATGGATTTGGTATTCCCAAAGTGC
TTGATTATCCAATCACATTGCGAGCTTTTCAACGAACATTCAGTAGTTTA
CCTTACATCCTTCCTGATGAAAGTTTTTGGGCCAAGGATGAGGTGTGTAT
AGTCTTTATGCCAATAGAAATTTCAGACGGTCTTTGATTTTCACTGCTGC
AAAAGAATTTACATAATTCTACTGAGCAGTCTTTGAGCTTTCTTATTTGT
AGCTTTTCGGCACATCATTTCACTAGAGCACTGAATTATTCGAAGTGATA
TACATCAAGTATTAATTTGCTTAGTACGACTCATTTTGTAAAAGATAGCG
AGGTTAATTATTGATAGATATTTTGCGACGACGAATTTAGTTTCCCCTAA
GCCTTCATTTATGCTATTTTGTACAGTTTATCCCAAAAAGAAGATAGACT
TGCCCTAAAAATCAACTTTGGTGCTAGAGCGAATTTCCgctttatttttc
gttttcaaagCAAAGTGTGTAGACTACGTGAGGAAAGTCTACTTTGCTTT
CCTACTTACCGCGAACGAAGGGCATATGAAGCCCGTTCGTCGTCGCGAAA
TATCTACCGATACTATTATGTATCACTATATGTCTTTCTCACAGATTATC
TTTTTCCCTAACAATCTTTCGTACTTTCATCCAGGTAATCGTCAAAACGT
CGAATCGGACATACACAGTACACCAATACGACGACCTCTTCAAAGACATG
GGTTATCCGCTAGCAAGTAAAATCTATGCAAAGACTCCTAAAGCGTGGTC
AGAAAAACCTCCTAACgtcaaaatgttttgttttcacgGGAGTGGTAAGG
ACACTCCCGGTGTTTTGAATTACCGAGAAGGATATTTTCCGAATTACACA
CCGGACATAACAATTGATGATGGGGATGGGACGGTGAACTTGCGGAGTCT
TCAAGCGTGTCAGTTGTGGagggaaaaacaaaaacaaccaaTAATTTATG
AAGAATTTTCTAGAGGTGAGCATAATGGTGTTTTGGGTGACGCTCGGCTC
ATCAGGTCCATCATTAAAGCTCTTAGTGAAGATTGATAGTCTCATATCTT
TAATACATTTGTGTAAATTCATTTTAATCTATATACCGTACTTCactatt
attttaacattttttgttgtttagtATTTAAAACATGTAGTATATTTTTA
GTCAGTATTGTCTACtttttgaaaacgttttaaATGGACGGACCATTGTG
TAAATAAGCAGGAATTTTCTAtcatagaaaaatatatttttaaacgaACT
TTCCAAAGTTTTCTCTCAACTAAAGTTTTTATTCGTCATAAGTTATTAAA
TACTCAGAAGATTTGAATTGTGACATGCATTTTCCAACAACACTGAacgt
aattttcaaaataaacattttgttgactaaaaatttgttttgaatagAAG
AACAAAGTATTGCACGAAAGTCACATAAGCTGCCTCCTTCATTGTCAAAA
ATTATATACGGTCTAAAGgtttggggacacgagaagtttttttcgcgttg
gtgcaatgcaacatgctccatcccaacAACATNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctg
gtgcatatcatgaatatcatgttCATTCATAAACAAAAACAGATGAACTT
ATTCGTTACAGTGGCTTCTAGCTATTATAAAGATTGGCTCATACTCTTCT
GCTTATTTCTTCCTCGTCTTGGTGGTCCAGGTCTTAAACATGATGACATC
ATAACCTTTCCCACGTGGCATTAGTGTATTACAAAGAGGATATTATTTTA
GTGTTGAAGAAGGATTAACCTCGAATTTTGTTGGATCTAACCGCATGCAA
TGTAGCTTCCTCAAATTTTGTAATgtaatctattcatgatatacacaatt
gcaatgtcttctgacattacatcacggacccaattagctgattggttgta
agtgacgtaaaatcagtcaatacgtcaccttcaaccaatcagctgttggg
tcctcggaagacattgcaatggtgcatatcatgaattcagcTTGCCTTCT
CGCACATGCgtggtcgttacttgaccttgGGTAATATTTCTCAACACACC
CCTCACTAactggtcattattgtattagtgtATATTCTTTTTAGGTGTAT
TCGGAGGTTCTATGAAAGCTGTGAAAGCGTTCATATCTGGTGATGGATTT
GGTATTCCCAAAGTGCTTGATTATCCAATCACATTGCGAGCTTTTCAACG
AACATTCAGTAGTTTACCTTACATCCTTCCTGATGAAAGTTTTTGGGCCA
AGGATGAGGTGTGTATAGTCTTTATGCCAATAGAAATTTCAGACGGTCTT
TGATTTTCACTGCTGCAAAAGAATTTACATAATTCTACTGAGCAGTCTTT
GAGCTTTCTTATTTGTAGCTTTTCGGCACATCATTTCACTAGAGCACTGA
ATTATTCGAAGTGATATACATCAAGTATTAATTTGCTTAGTACGACTCAT
TTTGTAAAAGATGGCGAGGTTAATTATTGATAGATATTTTGCGACGACGA
ATTTAGTTTCCCCTAAGCCTTCATTTATGCTATTTTGTACAGTTTATCCC
AAAAAGAAGATAGACTTGCCCTAAAAATCAACTTTGGTGCTAGAGCGAAT
TTCCgttttatttttcgttttcaaagCAAAGTGTGTAGACTACGTGAGGA
AAGCCTACCTTACTTTCCTACTTAGCGCGAACGAAGGCCATGTGAAGCCC
GTTCGTCGTCGCGAAATATCTACCGATACTATTATGTATCACTATATGTC
TTTCTCACAGATTATCTTTTTCCCTAACAACCTTTCGTACTTTCATCCAG
GTCATCGTGAAAACGTCGAATCGGACATACACAGTACACCAATACGACGA
CCTCTTCAAAGACATGGGTTATCCTCTAGCAAGTAAAATCTATGCAAAGA
CTCCTAAAGCGTGGTCAGAAAAACCTCCTAACgtcaaaatgttttgtttt
cacgGGAGTGGTAAGGACACTCCCGGTGTTTTGAATTACCGAGAAGGATA
TTTTCCGAATTACACACCGGACATAACAATTGATGATGGGGATGGGACGG
TGAACTTGCGGAGTCTTCAAGCGTGTCAGTTGTGGagggaaaaacaaaaa
caaccaaTAATTTATGAAGAATTTTCTAGAGGTGAGCATAATGGTGTTTT
GGGTGACGCTCGGCTCATCAGGTCCATCATTAAAGCTCTTAGTGAAGATT
GATAGTCTCATATCTTTAATACATTTGTGTAAATTCATTTTAATCTATAT
ACCGTACTTCactattattttaacattttttgttgtttagtATTTAAAAC
ATGTAGTATATTTTTAGTCAGTATTGTCTACtttttgaaaacgttttaaA
TGGACGGACCATTGTGTAAATAAGCAGGAATTTTCTAtcatagaaaaata
tatttttaaacgaACTTTCCAAAGTTTTCTCTC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00002070TCONS_00002070Clytia hemisphaericatranscript
TCONS_00002071TCONS_00002071Clytia hemisphaericatranscript
TCONS_00002072TCONS_00002072Clytia hemisphaericatranscript
TCONS_00002073TCONS_00002073Clytia hemisphaericatranscript
TCONS_00002074TCONS_00002074Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00002071-proteinTCONS_00002071-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:811203..816885 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
PLA2G15PREDICTED: group XV phospholipase A2 isoform X1 Homo Sapiens
LCATphosphatidylcholine-sterol acyltransferase precursor Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
46.41	40.83	63.29	63	51.07	41.66	42.6	44.42	43.42	35.83	45.16	36.48	29.2	34.7	24.27	25.02	37.01	42.08	54.02	55.46	45.75	42.72	48	46.9	67.77	60.66	29.85	29.69	25.24	28.81