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TCONS_00002074 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002074
Unique NameTCONS_00002074
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1310

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002074 ID=TCONS_00002074|Name=TCONS_00002074|organism=Clytia hemisphaerica|type=transcript|length=1310bp
TAGGCTGACTTACAACGAGAAGGAAGATCGAATGGAAAATACTGAAGGTG
TTTTCACCAGAATTCCTGGGTTTGGAAACACATCTGGCNAAGGCATTGTT
CTTGTTTAGGCTGACTTACAACGAGAAGGAAGATCGAATGGAAAATACTG
AAGGTGTTTTCACCAGAATTCCTGGGTTTGGAAACACATCTGGCATCGAA
TGGCTGGATCCTTATGTGCATGGACCTGGTATCTACTTCTTCCCTTTGGT
GGATTCATTAACCAGATTGCTGGGTTATGAGCGTGGAAAAACTTTACGAT
CTGCTCCGTATGACTTCCGCTACCATCCTGGAGATGCTGGTGATTATTTT
GATCGtttgaagaagttgattgaAGAGACGTACATGATGAATGGAGAGAA
GAAGATTATGTTGCTTTCTCATAGCATGGGTGTTCCTTACTCCCTCAACT
TTCTTCATCGACAAACTGAAGaatggaaagaaaaatatatcgTGGCATGG
ACCACTATTTCTGGTGTATTCGGAGGTTCTATGAAAGCTGTGAAAGCGTT
CATATCTGGTGATGGATTTGGTATTCCCAAAGTGCTTGATTATCCAATCA
CATTGCGAGCTTTTCAACGAACATTCAGTAGTTTACCTTACATCCTTCCT
GATGAAAGTTTTTGGGCCAAGGATGAGGTCATCGTGAAAACGTCGAATCG
GACATACACAGTACACCAATACGACGACCTCTTCAAAGACATGGGTTATC
CTCTAGCAAGTAAAATCTATGCAAAGACTCCTAAAGCGTGGTCAGAAAAA
CCTCCTAACgtcaaaatgttttgttttcacgGGAGTGGTAAGGACACTCC
CGGTGTTTTGAATTACCGAGAAGGATATTTTCCGAATTACACACCGGACA
TAACAATTGATGATGGGGATGGGACGGTGAACTTGCGGAGTCTTCAAGCG
TGTCAGTTGTGGagggaaaaacaaaaacaaccaaTAATTTATGAAGAATT
TTCTAGAGGTGAGCATAATGGTGTTTTGGGTGACGCTCGGCTCATCAGGT
CCATCATTAAAGCTCTTAGTGAAGATTGATAGTCTCATATCTTTAATACA
TTTGTGTAAATTCATTTTAATCTATATACCGTACTTCactattattttaa
cattttttgttgtttagtATTTAAAACATGTAGTATATTTTTAGTCAGTA
TTGTCTACtttttgaaaacgttttaaATGGACGGACCATTGTGTAAATAA
GCAGGAATTTTCTAtcatagaaaaatatatttttaaacgaACTTTCCAAA
GTTTTCTCTC
Run BLAST on NCBI

transcript from alignment at sc0000018:811204..816885+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002074 ID=TCONS_00002074|Name=TCONS_00002074|organism=Clytia hemisphaerica|type=transcript|length=5682bp|location=Sequence derived from alignment at sc0000018:811204..816885+ (Clytia hemisphaerica)
TAGGCTGACTTACAACGAGAAGGAAGATCGAATGGAAAATACTGAAGGTG TTTTCACCAGAATTCCTGGGTTTGGAAACACATCTGGCNAAGGCATTGTT CTTGTTTAGGCTGACTTACAACGAGAAGGAAGATCGAATGGAAAATACTG AAGGTGTTTTCACCAGAATTCCTGGGTTTGGAAACACATCTGGCATCGAA TGGCTGGATCCTTATGTGCATGGACCTGGTATCTACTTCTTCCCTTTGGT GGATTCATTAACCAGATTGCTGGGTTATGAGCGTGGAAAAACTTTACGAT CTGCTCCGTATGACTTCCGCTACCATCCTGGTAAGATGTTATTCATTTAC TTCATCTTTTCTTCTAGTTGGGAttttttaatggattttttGTATGTGAC TGTATGGTTTATTATGAGtgtcaattttcttgaaaatcatTGTTACATGA TGATACATCAAATCGGCGACcattaaattgttttaaaagaattttgtaTA AGGCTTATTTTGATATGACATTTAGATAgcaataagaaaatttgaaattc gaaaTCTTTCAGGAGATGCTGGTGATTATTTTGATCGtttgaagaagttg attgaAGAGACGTACATGATGAATGGAGAGAAGAAGATTATGTTGCTTTC TCATAGCATGGGTGTTCCTTACTCCCTCAACTTTCTTCATCGACAAACTG AAGaatggaaagaaaaatatatcgTGGCATGGACCACTATTTCTGGTATG AACAGTTCCACTTTTATTTGATGTTCGCcacttttatttgaaatattgaa agttCTTTCGTCTCAGACGTATTGTAAATAGGCTTTTCTAAAGCTTCAAG AATGTGCTAATTTGTTGTgtaaaaattttgctttgatcactgtattcatg atatgcaccattgcaatgtcatccgttccacccaatagctgattggttga aagtgacgtattgactgcttttacgtcacttccaaccaatgagctattgg ttccatgacgtaatgtcagaagacattgcactggtgcatatcatgaatat catgttCATTCATAAACAAAAACAGATGAACTTATTCGTTACAGTGGCTT CTAGCTATTATAAAGATTGGCTCATACTCTTCTGCTTATTTCTTCCTCGT CTTGGTGGTCCAGGTCTTAAACATGATGACATCATAACCTTTCCCACGTG GCATTAGTGTATTACAAAGAGGATATTATTTTAGTGTTGAAGAAGGATTA ACCTCGAATTTTGTTGGATCTAACCGCATGCAATGTAGCTTCCTCAAATT TTGTAATgtaatctattcatgatatacacaattgcaatgtcttctgacat tacatcacggacccaattagctgattggttgtaagtgacgtaaaatcagt caatacgtcaccttcaaccaatcagctgttgggtccgtggaagacattgc aatggtgcatatcatgaattcagcTTGCCTTCTCGCACATGCgtggtcgt tacttgaccttgGGTAATATTTCTCAATACACCCCTCACTAactggtcat tattgtattagtgtATATTCTTTTTAGGTGTATTCGGAGGTTCTATGAAA GCTGTGAAAGCGTTCATATCTGGTGATGGATTTGGTATTCCCAAAGTGCT TGATTATCCAATCACATTGCGAGCTTTTCAACGAACATTCAGTAGTTTAC CTTACATCCTTCCTGATGAAAGTTTTTGGGCCAAGGATGAGGTGTGTATA GTCTTTATGCCAATAGAAATTTCAGACGGTCTTTGATTTTCACTGCTGCA AAAGAATTTACATAATTCTACTGAGCAGTCTTTGAGCTTTCTTATTTGTA GCTTTTCGGCACATCATTTCACTAGAGCACTGAATTATTCGAAGTGATAT ACATCAAGTATTAATTTGCTTAGTACGACTCATTTTGTAAAAGATAGCGA GGTTAATTATTGATAGATATTTTGCGACGACGAATTTAGTTTCCCCTAAG CCTTCATTTATGCTATTTTGTACAGTTTATCCCAAAAAGAAGATAGACTT GCCCTAAAAATCAACTTTGGTGCTAGAGCGAATTTCCgctttatttttcg ttttcaaagCAAAGTGTGTAGACTACGTGAGGAAAGTCTACTTTGCTTTC CTACTTACCGCGAACGAAGGGCATATGAAGCCCGTTCGTCGTCGCGAAAT ATCTACCGATACTATTATGTATCACTATATGTCTTTCTCACAGATTATCT TTTTCCCTAACAATCTTTCGTACTTTCATCCAGGTAATCGTCAAAACGTC GAATCGGACATACACAGTACACCAATACGACGACCTCTTCAAAGACATGG GTTATCCGCTAGCAAGTAAAATCTATGCAAAGACTCCTAAAGCGTGGTCA GAAAAACCTCCTAACgtcaaaatgttttgttttcacgGGAGTGGTAAGGA CACTCCCGGTGTTTTGAATTACCGAGAAGGATATTTTCCGAATTACACAC CGGACATAACAATTGATGATGGGGATGGGACGGTGAACTTGCGGAGTCTT CAAGCGTGTCAGTTGTGGagggaaaaacaaaaacaaccaaTAATTTATGA AGAATTTTCTAGAGGTGAGCATAATGGTGTTTTGGGTGACGCTCGGCTCA TCAGGTCCATCATTAAAGCTCTTAGTGAAGATTGATAGTCTCATATCTTT AATACATTTGTGTAAATTCATTTTAATCTATATACCGTACTTCactatta ttttaacattttttgttgtttagtATTTAAAACATGTAGTATATTTTTAG TCAGTATTGTCTACtttttgaaaacgttttaaATGGACGGACCATTGTGT AAATAAGCAGGAATTTTCTAtcatagaaaaatatatttttaaacgaACTT TCCAAAGTTTTCTCTCAACTAAAGTTTTTATTCGTCATAAGTTATTAAAT ACTCAGAAGATTTGAATTGTGACATGCATTTTCCAACAACACTGAacgta attttcaaaataaacattttgttgactaaaaatttgttttgaatagAAGA ACAAAGTATTGCACGAAAGTCACATAAGCTGCCTCCTTCATTGTCAAAAA TTATATACGGTCTAAAGgtttggggacacgagaagtttttttcgcgttgg tgcaatgcaacatgctccatcccaacAACATNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctgg tgcatatcatgaatatcatgttCATTCATAAACAAAAACAGATGAACTTA TTCGTTACAGTGGCTTCTAGCTATTATAAAGATTGGCTCATACTCTTCTG CTTATTTCTTCCTCGTCTTGGTGGTCCAGGTCTTAAACATGATGACATCA TAACCTTTCCCACGTGGCATTAGTGTATTACAAAGAGGATATTATTTTAG TGTTGAAGAAGGATTAACCTCGAATTTTGTTGGATCTAACCGCATGCAAT GTAGCTTCCTCAAATTTTGTAATgtaatctattcatgatatacacaattg caatgtcttctgacattacatcacggacccaattagctgattggttgtaa gtgacgtaaaatcagtcaatacgtcaccttcaaccaatcagctgttgggt cctcggaagacattgcaatggtgcatatcatgaattcagcTTGCCTTCTC GCACATGCgtggtcgttacttgaccttgGGTAATATTTCTCAACACACCC CTCACTAactggtcattattgtattagtgtATATTCTTTTTAGGTGTATT CGGAGGTTCTATGAAAGCTGTGAAAGCGTTCATATCTGGTGATGGATTTG GTATTCCCAAAGTGCTTGATTATCCAATCACATTGCGAGCTTTTCAACGA ACATTCAGTAGTTTACCTTACATCCTTCCTGATGAAAGTTTTTGGGCCAA GGATGAGGTGTGTATAGTCTTTATGCCAATAGAAATTTCAGACGGTCTTT GATTTTCACTGCTGCAAAAGAATTTACATAATTCTACTGAGCAGTCTTTG AGCTTTCTTATTTGTAGCTTTTCGGCACATCATTTCACTAGAGCACTGAA TTATTCGAAGTGATATACATCAAGTATTAATTTGCTTAGTACGACTCATT TTGTAAAAGATGGCGAGGTTAATTATTGATAGATATTTTGCGACGACGAA TTTAGTTTCCCCTAAGCCTTCATTTATGCTATTTTGTACAGTTTATCCCA AAAAGAAGATAGACTTGCCCTAAAAATCAACTTTGGTGCTAGAGCGAATT TCCgttttatttttcgttttcaaagCAAAGTGTGTAGACTACGTGAGGAA AGCCTACCTTACTTTCCTACTTAGCGCGAACGAAGGCCATGTGAAGCCCG TTCGTCGTCGCGAAATATCTACCGATACTATTATGTATCACTATATGTCT TTCTCACAGATTATCTTTTTCCCTAACAACCTTTCGTACTTTCATCCAGG TCATCGTGAAAACGTCGAATCGGACATACACAGTACACCAATACGACGAC CTCTTCAAAGACATGGGTTATCCTCTAGCAAGTAAAATCTATGCAAAGAC TCCTAAAGCGTGGTCAGAAAAACCTCCTAACgtcaaaatgttttgttttc acgGGAGTGGTAAGGACACTCCCGGTGTTTTGAATTACCGAGAAGGATAT TTTCCGAATTACACACCGGACATAACAATTGATGATGGGGATGGGACGGT GAACTTGCGGAGTCTTCAAGCGTGTCAGTTGTGGagggaaaaacaaaaac aaccaaTAATTTATGAAGAATTTTCTAGAGGTGAGCATAATGGTGTTTTG GGTGACGCTCGGCTCATCAGGTCCATCATTAAAGCTCTTAGTGAAGATTG ATAGTCTCATATCTTTAATACATTTGTGTAAATTCATTTTAATCTATATA CCGTACTTCactattattttaacattttttgttgtttagtATTTAAAACA TGTAGTATATTTTTAGTCAGTATTGTCTACtttttgaaaacgttttaaAT GGACGGACCATTGTGTAAATAAGCAGGAATTTTCTAtcatagaaaaatat atttttaaacgaACTTTCCAAAGTTTTCTCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001088XLOC_001088Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002074-exon-sc0000018-1491911889:811204..811533TCONS_00002074-exon-sc0000018-1491911889:811204..811533Clytia hemisphaericaexon
TCONS_00002074-exon-sc0000018-1510915933:811204..811533TCONS_00002074-exon-sc0000018-1510915933:811204..811533Clytia hemisphaericaexon
TCONS_00002074-exon-sc0000018-1575043694:811204..811533TCONS_00002074-exon-sc0000018-1575043694:811204..811533Clytia hemisphaericaexon
TCONS_00002074-exon-sc0000018-1491911889:811766..811948TCONS_00002074-exon-sc0000018-1491911889:811766..811948Clytia hemisphaericaexon
TCONS_00002074-exon-sc0000018-1510915933:811766..811948TCONS_00002074-exon-sc0000018-1510915933:811766..811948Clytia hemisphaericaexon
TCONS_00002074-exon-sc0000018-1575043694:811766..811948TCONS_00002074-exon-sc0000018-1575043694:811766..811948Clytia hemisphaericaexon
TCONS_00002074-exon-sc0000018-1491911889:812781..812889TCONS_00002074-exon-sc0000018-1491911889:812781..812889Clytia hemisphaericaexon
TCONS_00002074-exon-sc0000018-1510915933:812781..812889TCONS_00002074-exon-sc0000018-1510915933:812781..812889Clytia hemisphaericaexon
TCONS_00002074-exon-sc0000018-1575043694:812781..812889TCONS_00002074-exon-sc0000018-1575043694:812781..812889Clytia hemisphaericaexon
TCONS_00002074-exon-sc0000018-1491911889:815656..815710TCONS_00002074-exon-sc0000018-1491911889:815656..815710Clytia hemisphaericaexon
TCONS_00002074-exon-sc0000018-1510915933:815656..815710TCONS_00002074-exon-sc0000018-1510915933:815656..815710Clytia hemisphaericaexon
TCONS_00002074-exon-sc0000018-1575043694:815656..815710TCONS_00002074-exon-sc0000018-1575043694:815656..815710Clytia hemisphaericaexon
TCONS_00002074-exon-sc0000018-1491911889:816253..816885TCONS_00002074-exon-sc0000018-1491911889:816253..816885Clytia hemisphaericaexon
TCONS_00002074-exon-sc0000018-1510915933:816253..816885TCONS_00002074-exon-sc0000018-1510915933:816253..816885Clytia hemisphaericaexon
TCONS_00002074-exon-sc0000018-1575043694:816253..816885TCONS_00002074-exon-sc0000018-1575043694:816253..816885Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:811204..816885 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.6565 13.8683 15.7104 24.1809 19.8758 15.7435 14.5224 16.1326 13.7269 5.29823 15.0561 13.3441 10.4614 13.876 11.2794 11.0939 14.6954 18.3287 21.4829 25.4123 19.6794 5.73366 16.6413 21.9231 22.4152 16.7113 10.669 12.2712 12.8433 12.6396
Blast
BLAST of TCONS_00002074 vs. Swiss-Prot (Human)
Match: PAG15 (Group XV phospholipase A2 OS=Homo sapiens GN=PLA2G15 PE=1 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 9.636e-57
Identity = 117/322 (36.34%), Postives = 179/322 (55.59%), Query Frame = 3
Query:  105 FRLTYNEKEDRMENTEGVFTRIPGFGNTSGIEWLDPYVHGPGIYFFPLVDSLTRLLGYERGKTLRSAPYDFRYHPGDAGDYFDRLKKLIEETYMMNGEKKIMLLSHSMGVPYSLNFLHRQTEEWKEKYIVAWTTISGVFGGSMKAVKAFISGDGFGIPKVLDYPITLRAFQRTFSSLPYILPDESFWAKDEVIVKTSNRTYTVHQYDDLFKDMGYPLASKIYAKTPK-AWSEKPPNVKMFCFHGSGKDTPGVLNYREGYFPNYTPXXXXXXXXXXVNLRSLQACQLWREKQKQPIIYEEFSRGEHNGVLGDARLIRSIIKAL 1067
             RL YN+     +  +GV  R+PGFG T  +E+LDP     G YF  +V+SL    GY RG+ +R APYD+R  P + G YF  L+++IEE Y + G   ++L++HSMG  Y+L FL RQ + WK+KYI A+ ++   +GG  K ++   SGD   IP +   P+ +R  QR+  S  ++LP    W+ ++V V+T    YT+  Y   F+D+G+     +   T     +  PP V++ C +G+G  TP    Y    FP+  P I   DGDGTVNL+S   CQ W+ +Q+  ++ +E    EH  +L +A  +  + + L
Sbjct:   94 IRLVYNKTSRATQFPDGVDVRVPGFGKTFSLEFLDPSKSSVGSYFHTMVESLVGW-GYTRGEDVRGAPYDWRRAPNENGPYFLALREMIEEMYQLYG-GPVVLVAHSMGNMYTLYFLQRQPQAWKDKYIRAFVSLGAPWGGVAKTLRVLASGDNNRIPVI--GPLKIREQQRSAVSTSWLLPYNYTWSPEKVFVQTPTINYTLRDYRKFFQDIGFEDGWLMRQDTEGLVEATMPPGVQLHCLYGTGVPTPDSFYYES--FPDRDPKICFGDGDGTVNLKSALQCQAWQSRQEHQVLLQELPGSEHIEMLANATTLAYLKRVL 409          
The following BLAST results are available for this feature:
BLAST of TCONS_00002074 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PAG159.636e-5736.34Group XV phospholipase A2 OS=Homo sapiens GN=PLA2G... [more]
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