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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002074 ID=TCONS_00002074|Name=TCONS_00002074|organism=Clytia hemisphaerica|type=transcript|length=1310bp TAGGCTGACTTACAACGAGAAGGAAGATCGAATGGAAAATACTGAAGGTG TTTTCACCAGAATTCCTGGGTTTGGAAACACATCTGGCNAAGGCATTGTT CTTGTTTAGGCTGACTTACAACGAGAAGGAAGATCGAATGGAAAATACTG AAGGTGTTTTCACCAGAATTCCTGGGTTTGGAAACACATCTGGCATCGAA TGGCTGGATCCTTATGTGCATGGACCTGGTATCTACTTCTTCCCTTTGGT GGATTCATTAACCAGATTGCTGGGTTATGAGCGTGGAAAAACTTTACGAT CTGCTCCGTATGACTTCCGCTACCATCCTGGAGATGCTGGTGATTATTTT GATCGtttgaagaagttgattgaAGAGACGTACATGATGAATGGAGAGAA GAAGATTATGTTGCTTTCTCATAGCATGGGTGTTCCTTACTCCCTCAACT TTCTTCATCGACAAACTGAAGaatggaaagaaaaatatatcgTGGCATGG ACCACTATTTCTGGTGTATTCGGAGGTTCTATGAAAGCTGTGAAAGCGTT CATATCTGGTGATGGATTTGGTATTCCCAAAGTGCTTGATTATCCAATCA CATTGCGAGCTTTTCAACGAACATTCAGTAGTTTACCTTACATCCTTCCT GATGAAAGTTTTTGGGCCAAGGATGAGGTCATCGTGAAAACGTCGAATCG GACATACACAGTACACCAATACGACGACCTCTTCAAAGACATGGGTTATC CTCTAGCAAGTAAAATCTATGCAAAGACTCCTAAAGCGTGGTCAGAAAAA CCTCCTAACgtcaaaatgttttgttttcacgGGAGTGGTAAGGACACTCC CGGTGTTTTGAATTACCGAGAAGGATATTTTCCGAATTACACACCGGACA TAACAATTGATGATGGGGATGGGACGGTGAACTTGCGGAGTCTTCAAGCG TGTCAGTTGTGGagggaaaaacaaaaacaaccaaTAATTTATGAAGAATT TTCTAGAGGTGAGCATAATGGTGTTTTGGGTGACGCTCGGCTCATCAGGT CCATCATTAAAGCTCTTAGTGAAGATTGATAGTCTCATATCTTTAATACA TTTGTGTAAATTCATTTTAATCTATATACCGTACTTCactattattttaa cattttttgttgtttagtATTTAAAACATGTAGTATATTTTTAGTCAGTA TTGTCTACtttttgaaaacgttttaaATGGACGGACCATTGTGTAAATAA GCAGGAATTTTCTAtcatagaaaaatatatttttaaacgaACTTTCCAAA GTTTTCTCTC Run BLAST on NCBI transcript from alignment at sc0000018:811204..816885+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002074 ID=TCONS_00002074|Name=TCONS_00002074|organism=Clytia hemisphaerica|type=transcript|length=5682bp|location=Sequence derived from alignment at sc0000018:811204..816885+ (Clytia hemisphaerica) TAGGCTGACTTACAACGAGAAGGAAGATCGAATGGAAAATACTGAAGGTG
TTTTCACCAGAATTCCTGGGTTTGGAAACACATCTGGCNAAGGCATTGTT
CTTGTTTAGGCTGACTTACAACGAGAAGGAAGATCGAATGGAAAATACTG
AAGGTGTTTTCACCAGAATTCCTGGGTTTGGAAACACATCTGGCATCGAA
TGGCTGGATCCTTATGTGCATGGACCTGGTATCTACTTCTTCCCTTTGGT
GGATTCATTAACCAGATTGCTGGGTTATGAGCGTGGAAAAACTTTACGAT
CTGCTCCGTATGACTTCCGCTACCATCCTGGTAAGATGTTATTCATTTAC
TTCATCTTTTCTTCTAGTTGGGAttttttaatggattttttGTATGTGAC
TGTATGGTTTATTATGAGtgtcaattttcttgaaaatcatTGTTACATGA
TGATACATCAAATCGGCGACcattaaattgttttaaaagaattttgtaTA
AGGCTTATTTTGATATGACATTTAGATAgcaataagaaaatttgaaattc
gaaaTCTTTCAGGAGATGCTGGTGATTATTTTGATCGtttgaagaagttg
attgaAGAGACGTACATGATGAATGGAGAGAAGAAGATTATGTTGCTTTC
TCATAGCATGGGTGTTCCTTACTCCCTCAACTTTCTTCATCGACAAACTG
AAGaatggaaagaaaaatatatcgTGGCATGGACCACTATTTCTGGTATG
AACAGTTCCACTTTTATTTGATGTTCGCcacttttatttgaaatattgaa
agttCTTTCGTCTCAGACGTATTGTAAATAGGCTTTTCTAAAGCTTCAAG
AATGTGCTAATTTGTTGTgtaaaaattttgctttgatcactgtattcatg
atatgcaccattgcaatgtcatccgttccacccaatagctgattggttga
aagtgacgtattgactgcttttacgtcacttccaaccaatgagctattgg
ttccatgacgtaatgtcagaagacattgcactggtgcatatcatgaatat
catgttCATTCATAAACAAAAACAGATGAACTTATTCGTTACAGTGGCTT
CTAGCTATTATAAAGATTGGCTCATACTCTTCTGCTTATTTCTTCCTCGT
CTTGGTGGTCCAGGTCTTAAACATGATGACATCATAACCTTTCCCACGTG
GCATTAGTGTATTACAAAGAGGATATTATTTTAGTGTTGAAGAAGGATTA
ACCTCGAATTTTGTTGGATCTAACCGCATGCAATGTAGCTTCCTCAAATT
TTGTAATgtaatctattcatgatatacacaattgcaatgtcttctgacat
tacatcacggacccaattagctgattggttgtaagtgacgtaaaatcagt
caatacgtcaccttcaaccaatcagctgttgggtccgtggaagacattgc
aatggtgcatatcatgaattcagcTTGCCTTCTCGCACATGCgtggtcgt
tacttgaccttgGGTAATATTTCTCAATACACCCCTCACTAactggtcat
tattgtattagtgtATATTCTTTTTAGGTGTATTCGGAGGTTCTATGAAA
GCTGTGAAAGCGTTCATATCTGGTGATGGATTTGGTATTCCCAAAGTGCT
TGATTATCCAATCACATTGCGAGCTTTTCAACGAACATTCAGTAGTTTAC
CTTACATCCTTCCTGATGAAAGTTTTTGGGCCAAGGATGAGGTGTGTATA
GTCTTTATGCCAATAGAAATTTCAGACGGTCTTTGATTTTCACTGCTGCA
AAAGAATTTACATAATTCTACTGAGCAGTCTTTGAGCTTTCTTATTTGTA
GCTTTTCGGCACATCATTTCACTAGAGCACTGAATTATTCGAAGTGATAT
ACATCAAGTATTAATTTGCTTAGTACGACTCATTTTGTAAAAGATAGCGA
GGTTAATTATTGATAGATATTTTGCGACGACGAATTTAGTTTCCCCTAAG
CCTTCATTTATGCTATTTTGTACAGTTTATCCCAAAAAGAAGATAGACTT
GCCCTAAAAATCAACTTTGGTGCTAGAGCGAATTTCCgctttatttttcg
ttttcaaagCAAAGTGTGTAGACTACGTGAGGAAAGTCTACTTTGCTTTC
CTACTTACCGCGAACGAAGGGCATATGAAGCCCGTTCGTCGTCGCGAAAT
ATCTACCGATACTATTATGTATCACTATATGTCTTTCTCACAGATTATCT
TTTTCCCTAACAATCTTTCGTACTTTCATCCAGGTAATCGTCAAAACGTC
GAATCGGACATACACAGTACACCAATACGACGACCTCTTCAAAGACATGG
GTTATCCGCTAGCAAGTAAAATCTATGCAAAGACTCCTAAAGCGTGGTCA
GAAAAACCTCCTAACgtcaaaatgttttgttttcacgGGAGTGGTAAGGA
CACTCCCGGTGTTTTGAATTACCGAGAAGGATATTTTCCGAATTACACAC
CGGACATAACAATTGATGATGGGGATGGGACGGTGAACTTGCGGAGTCTT
CAAGCGTGTCAGTTGTGGagggaaaaacaaaaacaaccaaTAATTTATGA
AGAATTTTCTAGAGGTGAGCATAATGGTGTTTTGGGTGACGCTCGGCTCA
TCAGGTCCATCATTAAAGCTCTTAGTGAAGATTGATAGTCTCATATCTTT
AATACATTTGTGTAAATTCATTTTAATCTATATACCGTACTTCactatta
ttttaacattttttgttgtttagtATTTAAAACATGTAGTATATTTTTAG
TCAGTATTGTCTACtttttgaaaacgttttaaATGGACGGACCATTGTGT
AAATAAGCAGGAATTTTCTAtcatagaaaaatatatttttaaacgaACTT
TCCAAAGTTTTCTCTCAACTAAAGTTTTTATTCGTCATAAGTTATTAAAT
ACTCAGAAGATTTGAATTGTGACATGCATTTTCCAACAACACTGAacgta
attttcaaaataaacattttgttgactaaaaatttgttttgaatagAAGA
ACAAAGTATTGCACGAAAGTCACATAAGCTGCCTCCTTCATTGTCAAAAA
TTATATACGGTCTAAAGgtttggggacacgagaagtttttttcgcgttgg
tgcaatgcaacatgctccatcccaacAACATNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctgg
tgcatatcatgaatatcatgttCATTCATAAACAAAAACAGATGAACTTA
TTCGTTACAGTGGCTTCTAGCTATTATAAAGATTGGCTCATACTCTTCTG
CTTATTTCTTCCTCGTCTTGGTGGTCCAGGTCTTAAACATGATGACATCA
TAACCTTTCCCACGTGGCATTAGTGTATTACAAAGAGGATATTATTTTAG
TGTTGAAGAAGGATTAACCTCGAATTTTGTTGGATCTAACCGCATGCAAT
GTAGCTTCCTCAAATTTTGTAATgtaatctattcatgatatacacaattg
caatgtcttctgacattacatcacggacccaattagctgattggttgtaa
gtgacgtaaaatcagtcaatacgtcaccttcaaccaatcagctgttgggt
cctcggaagacattgcaatggtgcatatcatgaattcagcTTGCCTTCTC
GCACATGCgtggtcgttacttgaccttgGGTAATATTTCTCAACACACCC
CTCACTAactggtcattattgtattagtgtATATTCTTTTTAGGTGTATT
CGGAGGTTCTATGAAAGCTGTGAAAGCGTTCATATCTGGTGATGGATTTG
GTATTCCCAAAGTGCTTGATTATCCAATCACATTGCGAGCTTTTCAACGA
ACATTCAGTAGTTTACCTTACATCCTTCCTGATGAAAGTTTTTGGGCCAA
GGATGAGGTGTGTATAGTCTTTATGCCAATAGAAATTTCAGACGGTCTTT
GATTTTCACTGCTGCAAAAGAATTTACATAATTCTACTGAGCAGTCTTTG
AGCTTTCTTATTTGTAGCTTTTCGGCACATCATTTCACTAGAGCACTGAA
TTATTCGAAGTGATATACATCAAGTATTAATTTGCTTAGTACGACTCATT
TTGTAAAAGATGGCGAGGTTAATTATTGATAGATATTTTGCGACGACGAA
TTTAGTTTCCCCTAAGCCTTCATTTATGCTATTTTGTACAGTTTATCCCA
AAAAGAAGATAGACTTGCCCTAAAAATCAACTTTGGTGCTAGAGCGAATT
TCCgttttatttttcgttttcaaagCAAAGTGTGTAGACTACGTGAGGAA
AGCCTACCTTACTTTCCTACTTAGCGCGAACGAAGGCCATGTGAAGCCCG
TTCGTCGTCGCGAAATATCTACCGATACTATTATGTATCACTATATGTCT
TTCTCACAGATTATCTTTTTCCCTAACAACCTTTCGTACTTTCATCCAGG
TCATCGTGAAAACGTCGAATCGGACATACACAGTACACCAATACGACGAC
CTCTTCAAAGACATGGGTTATCCTCTAGCAAGTAAAATCTATGCAAAGAC
TCCTAAAGCGTGGTCAGAAAAACCTCCTAACgtcaaaatgttttgttttc
acgGGAGTGGTAAGGACACTCCCGGTGTTTTGAATTACCGAGAAGGATAT
TTTCCGAATTACACACCGGACATAACAATTGATGATGGGGATGGGACGGT
GAACTTGCGGAGTCTTCAAGCGTGTCAGTTGTGGagggaaaaacaaaaac
aaccaaTAATTTATGAAGAATTTTCTAGAGGTGAGCATAATGGTGTTTTG
GGTGACGCTCGGCTCATCAGGTCCATCATTAAAGCTCTTAGTGAAGATTG
ATAGTCTCATATCTTTAATACATTTGTGTAAATTCATTTTAATCTATATA
CCGTACTTCactattattttaacattttttgttgtttagtATTTAAAACA
TGTAGTATATTTTTAGTCAGTATTGTCTACtttttgaaaacgttttaaAT
GGACGGACCATTGTGTAAATAAGCAGGAATTTTCTAtcatagaaaaatat
atttttaaacgaACTTTCCAAAGTTTTCTCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00002074-exon-sc0000018-1491911889:811204..811533 | TCONS_00002074-exon-sc0000018-1491911889:811204..811533 | Clytia hemisphaerica | exon |
TCONS_00002074-exon-sc0000018-1510915933:811204..811533 | TCONS_00002074-exon-sc0000018-1510915933:811204..811533 | Clytia hemisphaerica | exon |
TCONS_00002074-exon-sc0000018-1575043694:811204..811533 | TCONS_00002074-exon-sc0000018-1575043694:811204..811533 | Clytia hemisphaerica | exon |
TCONS_00002074-exon-sc0000018-1491911889:811766..811948 | TCONS_00002074-exon-sc0000018-1491911889:811766..811948 | Clytia hemisphaerica | exon |
TCONS_00002074-exon-sc0000018-1510915933:811766..811948 | TCONS_00002074-exon-sc0000018-1510915933:811766..811948 | Clytia hemisphaerica | exon |
TCONS_00002074-exon-sc0000018-1575043694:811766..811948 | TCONS_00002074-exon-sc0000018-1575043694:811766..811948 | Clytia hemisphaerica | exon |
TCONS_00002074-exon-sc0000018-1491911889:812781..812889 | TCONS_00002074-exon-sc0000018-1491911889:812781..812889 | Clytia hemisphaerica | exon |
TCONS_00002074-exon-sc0000018-1510915933:812781..812889 | TCONS_00002074-exon-sc0000018-1510915933:812781..812889 | Clytia hemisphaerica | exon |
TCONS_00002074-exon-sc0000018-1575043694:812781..812889 | TCONS_00002074-exon-sc0000018-1575043694:812781..812889 | Clytia hemisphaerica | exon |
TCONS_00002074-exon-sc0000018-1491911889:815656..815710 | TCONS_00002074-exon-sc0000018-1491911889:815656..815710 | Clytia hemisphaerica | exon |
TCONS_00002074-exon-sc0000018-1510915933:815656..815710 | TCONS_00002074-exon-sc0000018-1510915933:815656..815710 | Clytia hemisphaerica | exon |
TCONS_00002074-exon-sc0000018-1575043694:815656..815710 | TCONS_00002074-exon-sc0000018-1575043694:815656..815710 | Clytia hemisphaerica | exon |
TCONS_00002074-exon-sc0000018-1491911889:816253..816885 | TCONS_00002074-exon-sc0000018-1491911889:816253..816885 | Clytia hemisphaerica | exon |
TCONS_00002074-exon-sc0000018-1510915933:816253..816885 | TCONS_00002074-exon-sc0000018-1510915933:816253..816885 | Clytia hemisphaerica | exon |
TCONS_00002074-exon-sc0000018-1575043694:816253..816885 | TCONS_00002074-exon-sc0000018-1575043694:816253..816885 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000018 | supercontig | sc0000018:811204..816885 + |
Blast
BLAST of TCONS_00002074 vs. Swiss-Prot (Human)
Match: PAG15 (Group XV phospholipase A2 OS=Homo sapiens GN=PLA2G15 PE=1 SV=2) HSP 1 Score: 195.282 bits (495), Expect = 9.636e-57 Identity = 117/322 (36.34%), Postives = 179/322 (55.59%), Query Frame = 3
Query: 105 FRLTYNEKEDRMENTEGVFTRIPGFGNTSGIEWLDPYVHGPGIYFFPLVDSLTRLLGYERGKTLRSAPYDFRYHPGDAGDYFDRLKKLIEETYMMNGEKKIMLLSHSMGVPYSLNFLHRQTEEWKEKYIVAWTTISGVFGGSMKAVKAFISGDGFGIPKVLDYPITLRAFQRTFSSLPYILPDESFWAKDEVIVKTSNRTYTVHQYDDLFKDMGYPLASKIYAKTPK-AWSEKPPNVKMFCFHGSGKDTPGVLNYREGYFPNYTPXXXXXXXXXXVNLRSLQACQLWREKQKQPIIYEEFSRGEHNGVLGDARLIRSIIKAL 1067
RL YN+ + +GV R+PGFG T +E+LDP G YF +V+SL GY RG+ +R APYD+R P + G YF L+++IEE Y + G ++L++HSMG Y+L FL RQ + WK+KYI A+ ++ +GG K ++ SGD IP + P+ +R QR+ S ++LP W+ ++V V+T YT+ Y F+D+G+ + T + PP V++ C +G+G TP Y FP+ P I DGDGTVNL+S CQ W+ +Q+ ++ +E EH +L +A + + + L
Sbjct: 94 IRLVYNKTSRATQFPDGVDVRVPGFGKTFSLEFLDPSKSSVGSYFHTMVESLVGW-GYTRGEDVRGAPYDWRRAPNENGPYFLALREMIEEMYQLYG-GPVVLVAHSMGNMYTLYFLQRQPQAWKDKYIRAFVSLGAPWGGVAKTLRVLASGDNNRIPVI--GPLKIREQQRSAVSTSWLLPYNYTWSPEKVFVQTPTINYTLRDYRKFFQDIGFEDGWLMRQDTEGLVEATMPPGVQLHCLYGTGVPTPDSFYYES--FPDRDPKICFGDGDGTVNLKSALQCQAWQSRQEHQVLLQELPGSEHIEMLANATTLAYLKRVL 409
The following BLAST results are available for this feature:
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