TCONS_00002074 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002074
Unique NameTCONS_00002074
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1310

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002074 ID=TCONS_00002074|Name=TCONS_00002074|organism=Clytia hemisphaerica|type=transcript|length=1310bp
TAGGCTGACTTACAACGAGAAGGAAGATCGAATGGAAAATACTGAAGGTG
TTTTCACCAGAATTCCTGGGTTTGGAAACACATCTGGCNAAGGCATTGTT
CTTGTTTAGGCTGACTTACAACGAGAAGGAAGATCGAATGGAAAATACTG
AAGGTGTTTTCACCAGAATTCCTGGGTTTGGAAACACATCTGGCATCGAA
TGGCTGGATCCTTATGTGCATGGACCTGGTATCTACTTCTTCCCTTTGGT
GGATTCATTAACCAGATTGCTGGGTTATGAGCGTGGAAAAACTTTACGAT
CTGCTCCGTATGACTTCCGCTACCATCCTGGAGATGCTGGTGATTATTTT
GATCGtttgaagaagttgattgaAGAGACGTACATGATGAATGGAGAGAA
GAAGATTATGTTGCTTTCTCATAGCATGGGTGTTCCTTACTCCCTCAACT
TTCTTCATCGACAAACTGAAGaatggaaagaaaaatatatcgTGGCATGG
ACCACTATTTCTGGTGTATTCGGAGGTTCTATGAAAGCTGTGAAAGCGTT
CATATCTGGTGATGGATTTGGTATTCCCAAAGTGCTTGATTATCCAATCA
CATTGCGAGCTTTTCAACGAACATTCAGTAGTTTACCTTACATCCTTCCT
GATGAAAGTTTTTGGGCCAAGGATGAGGTCATCGTGAAAACGTCGAATCG
GACATACACAGTACACCAATACGACGACCTCTTCAAAGACATGGGTTATC
CTCTAGCAAGTAAAATCTATGCAAAGACTCCTAAAGCGTGGTCAGAAAAA
CCTCCTAACgtcaaaatgttttgttttcacgGGAGTGGTAAGGACACTCC
CGGTGTTTTGAATTACCGAGAAGGATATTTTCCGAATTACACACCGGACA
TAACAATTGATGATGGGGATGGGACGGTGAACTTGCGGAGTCTTCAAGCG
TGTCAGTTGTGGagggaaaaacaaaaacaaccaaTAATTTATGAAGAATT
TTCTAGAGGTGAGCATAATGGTGTTTTGGGTGACGCTCGGCTCATCAGGT
CCATCATTAAAGCTCTTAGTGAAGATTGATAGTCTCATATCTTTAATACA
TTTGTGTAAATTCATTTTAATCTATATACCGTACTTCactattattttaa
cattttttgttgtttagtATTTAAAACATGTAGTATATTTTTAGTCAGTA
TTGTCTACtttttgaaaacgttttaaATGGACGGACCATTGTGTAAATAA
GCAGGAATTTTCTAtcatagaaaaatatatttttaaacgaACTTTCCAAA
GTTTTCTCTC
Run BLAST on NCBI

transcript from alignment at sc0000018:811204..816885+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002074 ID=TCONS_00002074|Name=TCONS_00002074|organism=Clytia hemisphaerica|type=transcript|length=5682bp|location=Sequence derived from alignment at sc0000018:811204..816885+ (Clytia hemisphaerica)
TAGGCTGACTTACAACGAGAAGGAAGATCGAATGGAAAATACTGAAGGTG
TTTTCACCAGAATTCCTGGGTTTGGAAACACATCTGGCNAAGGCATTGTT
CTTGTTTAGGCTGACTTACAACGAGAAGGAAGATCGAATGGAAAATACTG
AAGGTGTTTTCACCAGAATTCCTGGGTTTGGAAACACATCTGGCATCGAA
TGGCTGGATCCTTATGTGCATGGACCTGGTATCTACTTCTTCCCTTTGGT
GGATTCATTAACCAGATTGCTGGGTTATGAGCGTGGAAAAACTTTACGAT
CTGCTCCGTATGACTTCCGCTACCATCCTGGTAAGATGTTATTCATTTAC
TTCATCTTTTCTTCTAGTTGGGAttttttaatggattttttGTATGTGAC
TGTATGGTTTATTATGAGtgtcaattttcttgaaaatcatTGTTACATGA
TGATACATCAAATCGGCGACcattaaattgttttaaaagaattttgtaTA
AGGCTTATTTTGATATGACATTTAGATAgcaataagaaaatttgaaattc
gaaaTCTTTCAGGAGATGCTGGTGATTATTTTGATCGtttgaagaagttg
attgaAGAGACGTACATGATGAATGGAGAGAAGAAGATTATGTTGCTTTC
TCATAGCATGGGTGTTCCTTACTCCCTCAACTTTCTTCATCGACAAACTG
AAGaatggaaagaaaaatatatcgTGGCATGGACCACTATTTCTGGTATG
AACAGTTCCACTTTTATTTGATGTTCGCcacttttatttgaaatattgaa
agttCTTTCGTCTCAGACGTATTGTAAATAGGCTTTTCTAAAGCTTCAAG
AATGTGCTAATTTGTTGTgtaaaaattttgctttgatcactgtattcatg
atatgcaccattgcaatgtcatccgttccacccaatagctgattggttga
aagtgacgtattgactgcttttacgtcacttccaaccaatgagctattgg
ttccatgacgtaatgtcagaagacattgcactggtgcatatcatgaatat
catgttCATTCATAAACAAAAACAGATGAACTTATTCGTTACAGTGGCTT
CTAGCTATTATAAAGATTGGCTCATACTCTTCTGCTTATTTCTTCCTCGT
CTTGGTGGTCCAGGTCTTAAACATGATGACATCATAACCTTTCCCACGTG
GCATTAGTGTATTACAAAGAGGATATTATTTTAGTGTTGAAGAAGGATTA
ACCTCGAATTTTGTTGGATCTAACCGCATGCAATGTAGCTTCCTCAAATT
TTGTAATgtaatctattcatgatatacacaattgcaatgtcttctgacat
tacatcacggacccaattagctgattggttgtaagtgacgtaaaatcagt
caatacgtcaccttcaaccaatcagctgttgggtccgtggaagacattgc
aatggtgcatatcatgaattcagcTTGCCTTCTCGCACATGCgtggtcgt
tacttgaccttgGGTAATATTTCTCAATACACCCCTCACTAactggtcat
tattgtattagtgtATATTCTTTTTAGGTGTATTCGGAGGTTCTATGAAA
GCTGTGAAAGCGTTCATATCTGGTGATGGATTTGGTATTCCCAAAGTGCT
TGATTATCCAATCACATTGCGAGCTTTTCAACGAACATTCAGTAGTTTAC
CTTACATCCTTCCTGATGAAAGTTTTTGGGCCAAGGATGAGGTGTGTATA
GTCTTTATGCCAATAGAAATTTCAGACGGTCTTTGATTTTCACTGCTGCA
AAAGAATTTACATAATTCTACTGAGCAGTCTTTGAGCTTTCTTATTTGTA
GCTTTTCGGCACATCATTTCACTAGAGCACTGAATTATTCGAAGTGATAT
ACATCAAGTATTAATTTGCTTAGTACGACTCATTTTGTAAAAGATAGCGA
GGTTAATTATTGATAGATATTTTGCGACGACGAATTTAGTTTCCCCTAAG
CCTTCATTTATGCTATTTTGTACAGTTTATCCCAAAAAGAAGATAGACTT
GCCCTAAAAATCAACTTTGGTGCTAGAGCGAATTTCCgctttatttttcg
ttttcaaagCAAAGTGTGTAGACTACGTGAGGAAAGTCTACTTTGCTTTC
CTACTTACCGCGAACGAAGGGCATATGAAGCCCGTTCGTCGTCGCGAAAT
ATCTACCGATACTATTATGTATCACTATATGTCTTTCTCACAGATTATCT
TTTTCCCTAACAATCTTTCGTACTTTCATCCAGGTAATCGTCAAAACGTC
GAATCGGACATACACAGTACACCAATACGACGACCTCTTCAAAGACATGG
GTTATCCGCTAGCAAGTAAAATCTATGCAAAGACTCCTAAAGCGTGGTCA
GAAAAACCTCCTAACgtcaaaatgttttgttttcacgGGAGTGGTAAGGA
CACTCCCGGTGTTTTGAATTACCGAGAAGGATATTTTCCGAATTACACAC
CGGACATAACAATTGATGATGGGGATGGGACGGTGAACTTGCGGAGTCTT
CAAGCGTGTCAGTTGTGGagggaaaaacaaaaacaaccaaTAATTTATGA
AGAATTTTCTAGAGGTGAGCATAATGGTGTTTTGGGTGACGCTCGGCTCA
TCAGGTCCATCATTAAAGCTCTTAGTGAAGATTGATAGTCTCATATCTTT
AATACATTTGTGTAAATTCATTTTAATCTATATACCGTACTTCactatta
ttttaacattttttgttgtttagtATTTAAAACATGTAGTATATTTTTAG
TCAGTATTGTCTACtttttgaaaacgttttaaATGGACGGACCATTGTGT
AAATAAGCAGGAATTTTCTAtcatagaaaaatatatttttaaacgaACTT
TCCAAAGTTTTCTCTCAACTAAAGTTTTTATTCGTCATAAGTTATTAAAT
ACTCAGAAGATTTGAATTGTGACATGCATTTTCCAACAACACTGAacgta
attttcaaaataaacattttgttgactaaaaatttgttttgaatagAAGA
ACAAAGTATTGCACGAAAGTCACATAAGCTGCCTCCTTCATTGTCAAAAA
TTATATACGGTCTAAAGgtttggggacacgagaagtttttttcgcgttgg
tgcaatgcaacatgctccatcccaacAACATNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctgg
tgcatatcatgaatatcatgttCATTCATAAACAAAAACAGATGAACTTA
TTCGTTACAGTGGCTTCTAGCTATTATAAAGATTGGCTCATACTCTTCTG
CTTATTTCTTCCTCGTCTTGGTGGTCCAGGTCTTAAACATGATGACATCA
TAACCTTTCCCACGTGGCATTAGTGTATTACAAAGAGGATATTATTTTAG
TGTTGAAGAAGGATTAACCTCGAATTTTGTTGGATCTAACCGCATGCAAT
GTAGCTTCCTCAAATTTTGTAATgtaatctattcatgatatacacaattg
caatgtcttctgacattacatcacggacccaattagctgattggttgtaa
gtgacgtaaaatcagtcaatacgtcaccttcaaccaatcagctgttgggt
cctcggaagacattgcaatggtgcatatcatgaattcagcTTGCCTTCTC
GCACATGCgtggtcgttacttgaccttgGGTAATATTTCTCAACACACCC
CTCACTAactggtcattattgtattagtgtATATTCTTTTTAGGTGTATT
CGGAGGTTCTATGAAAGCTGTGAAAGCGTTCATATCTGGTGATGGATTTG
GTATTCCCAAAGTGCTTGATTATCCAATCACATTGCGAGCTTTTCAACGA
ACATTCAGTAGTTTACCTTACATCCTTCCTGATGAAAGTTTTTGGGCCAA
GGATGAGGTGTGTATAGTCTTTATGCCAATAGAAATTTCAGACGGTCTTT
GATTTTCACTGCTGCAAAAGAATTTACATAATTCTACTGAGCAGTCTTTG
AGCTTTCTTATTTGTAGCTTTTCGGCACATCATTTCACTAGAGCACTGAA
TTATTCGAAGTGATATACATCAAGTATTAATTTGCTTAGTACGACTCATT
TTGTAAAAGATGGCGAGGTTAATTATTGATAGATATTTTGCGACGACGAA
TTTAGTTTCCCCTAAGCCTTCATTTATGCTATTTTGTACAGTTTATCCCA
AAAAGAAGATAGACTTGCCCTAAAAATCAACTTTGGTGCTAGAGCGAATT
TCCgttttatttttcgttttcaaagCAAAGTGTGTAGACTACGTGAGGAA
AGCCTACCTTACTTTCCTACTTAGCGCGAACGAAGGCCATGTGAAGCCCG
TTCGTCGTCGCGAAATATCTACCGATACTATTATGTATCACTATATGTCT
TTCTCACAGATTATCTTTTTCCCTAACAACCTTTCGTACTTTCATCCAGG
TCATCGTGAAAACGTCGAATCGGACATACACAGTACACCAATACGACGAC
CTCTTCAAAGACATGGGTTATCCTCTAGCAAGTAAAATCTATGCAAAGAC
TCCTAAAGCGTGGTCAGAAAAACCTCCTAACgtcaaaatgttttgttttc
acgGGAGTGGTAAGGACACTCCCGGTGTTTTGAATTACCGAGAAGGATAT
TTTCCGAATTACACACCGGACATAACAATTGATGATGGGGATGGGACGGT
GAACTTGCGGAGTCTTCAAGCGTGTCAGTTGTGGagggaaaaacaaaaac
aaccaaTAATTTATGAAGAATTTTCTAGAGGTGAGCATAATGGTGTTTTG
GGTGACGCTCGGCTCATCAGGTCCATCATTAAAGCTCTTAGTGAAGATTG
ATAGTCTCATATCTTTAATACATTTGTGTAAATTCATTTTAATCTATATA
CCGTACTTCactattattttaacattttttgttgtttagtATTTAAAACA
TGTAGTATATTTTTAGTCAGTATTGTCTACtttttgaaaacgttttaaAT
GGACGGACCATTGTGTAAATAAGCAGGAATTTTCTAtcatagaaaaatat
atttttaaacgaACTTTCCAAAGTTTTCTCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001088XLOC_001088Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002074-exon-sc0000018-1491911889:811204..811533TCONS_00002074-exon-sc0000018-1491911889:811204..811533Clytia hemisphaericaexon
TCONS_00002074-exon-sc0000018-1510915933:811204..811533TCONS_00002074-exon-sc0000018-1510915933:811204..811533Clytia hemisphaericaexon
TCONS_00002074-exon-sc0000018-1575043694:811204..811533TCONS_00002074-exon-sc0000018-1575043694:811204..811533Clytia hemisphaericaexon
TCONS_00002074-exon-sc0000018-1491911889:811766..811948TCONS_00002074-exon-sc0000018-1491911889:811766..811948Clytia hemisphaericaexon
TCONS_00002074-exon-sc0000018-1510915933:811766..811948TCONS_00002074-exon-sc0000018-1510915933:811766..811948Clytia hemisphaericaexon
TCONS_00002074-exon-sc0000018-1575043694:811766..811948TCONS_00002074-exon-sc0000018-1575043694:811766..811948Clytia hemisphaericaexon
TCONS_00002074-exon-sc0000018-1491911889:812781..812889TCONS_00002074-exon-sc0000018-1491911889:812781..812889Clytia hemisphaericaexon
TCONS_00002074-exon-sc0000018-1510915933:812781..812889TCONS_00002074-exon-sc0000018-1510915933:812781..812889Clytia hemisphaericaexon
TCONS_00002074-exon-sc0000018-1575043694:812781..812889TCONS_00002074-exon-sc0000018-1575043694:812781..812889Clytia hemisphaericaexon
TCONS_00002074-exon-sc0000018-1491911889:815656..815710TCONS_00002074-exon-sc0000018-1491911889:815656..815710Clytia hemisphaericaexon
TCONS_00002074-exon-sc0000018-1510915933:815656..815710TCONS_00002074-exon-sc0000018-1510915933:815656..815710Clytia hemisphaericaexon
TCONS_00002074-exon-sc0000018-1575043694:815656..815710TCONS_00002074-exon-sc0000018-1575043694:815656..815710Clytia hemisphaericaexon
TCONS_00002074-exon-sc0000018-1491911889:816253..816885TCONS_00002074-exon-sc0000018-1491911889:816253..816885Clytia hemisphaericaexon
TCONS_00002074-exon-sc0000018-1510915933:816253..816885TCONS_00002074-exon-sc0000018-1510915933:816253..816885Clytia hemisphaericaexon
TCONS_00002074-exon-sc0000018-1575043694:816253..816885TCONS_00002074-exon-sc0000018-1575043694:816253..816885Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:811204..816885 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.6565	13.8683	15.7104	24.1809	19.8758	15.7435	14.5224	16.1326	13.7269	5.29823	15.0561	13.3441	10.4614	13.876	11.2794	11.0939	14.6954	18.3287	21.4829	25.4123	19.6794	5.73366	16.6413	21.9231	22.4152	16.7113	10.669	12.2712	12.8433	12.6396
Blast
[Close]
BLAST of TCONS_00002074 vs. Swiss-Prot (Human)
Match: PAG15 (Group XV phospholipase A2 OS=Homo sapiens GN=PLA2G15 PE=1 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 9.636e-57
Identity = 117/322 (36.34%), Postives = 179/322 (55.59%), Query Frame = 3 
Query:  105 FRLTYNEKEDRMENTEGVFTRIPGFGNTSGIEWLDPYVHGPGIYFFPLVDSLTRLLGYERGKTLRSAPYDFRYHPGDAGDYFDRLKKLIEETYMMNGEKKIMLLSHSMGVPYSLNFLHRQTEEWKEKYIVAWTTISGVFGGSMKAVKAFISGDGFGIPKVLDYPITLRAFQRTFSSLPYILPDESFWAKDEVIVKTSNRTYTVHQYDDLFKDMGYPLASKIYAKTPK-AWSEKPPNVKMFCFHGSGKDTPGVLNYREGYFPNYTPXXXXXXXXXXVNLRSLQACQLWREKQKQPIIYEEFSRGEHNGVLGDARLIRSIIKAL 1067
             RL YN+     +  +GV  R+PGFG T  +E+LDP     G YF  +V+SL    GY RG+ +R APYD+R  P + G YF  L+++IEE Y + G   ++L++HSMG  Y+L FL RQ + WK+KYI A+ ++   +GG  K ++   SGD   IP +   P+ +R  QR+  S  ++LP    W+ ++V V+T    YT+  Y   F+D+G+     +   T     +  PP V++ C +G+G  TP    Y    FP+  P I   DGDGTVNL+S   CQ W+ +Q+  ++ +E    EH  +L +A  +  + + L
Sbjct:   94 IRLVYNKTSRATQFPDGVDVRVPGFGKTFSLEFLDPSKSSVGSYFHTMVESLVGW-GYTRGEDVRGAPYDWRRAPNENGPYFLALREMIEEMYQLYG-GPVVLVAHSMGNMYTLYFLQRQPQAWKDKYIRAFVSLGAPWGGVAKTLRVLASGDNNRIPVI--GPLKIREQQRSAVSTSWLLPYNYTWSPEKVFVQTPTINYTLRDYRKFFQDIGFEDGWLMRQDTEGLVEATMPPGVQLHCLYGTGVPTPDSFYYES--FPDRDPKICFGDGDGTVNLKSALQCQAWQSRQEHQVLLQELPGSEHIEMLANATTLAYLKRVL 409
The following BLAST results are available for this feature:
BLAST of TCONS_00002074 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PAG159.636e-5736.34Group XV phospholipase A2 OS=Homo sapiens GN=PLA2G... [more]
back to top