XLOC_001086 (gene) - C. hemisphaerica

Overview
NameXLOC_001086
Unique NameXLOC_001086
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000018:757659..761365+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_001086 ID=XLOC_001086|Name=XLOC_001086|organism=Clytia hemisphaerica|type=gene|length=3707bp|location=Sequence derived from alignment at sc0000018:757659..761365+ (Clytia hemisphaerica)
CTGAAACATAATGTCATTTTAAATCAGACAAAGACACAAGAAGGTTAACA
AGAAGGTTACAAGAATATCCAGTAAGTACTGATTTGAGTTTTATCTTTAC
AACTGATTACAGCAATCTCGTGCAAGAAGTGAAAATGATTTGATGATCAA
AGAAACTTCTaatgaattatttttgtttCGTTTTAATTTTCAGACGACCA
TGGAAGGTCTATTATTGACGCTGCTTTTGATATGCTCGATTTCATTACCT
TCAGAAGCTCAGAGCACTACTCTTTCGCCTGCAAACACTACCAACTCTCT
CAATACAACTACTACTTCTCCTTTTACGACTACAACAACAGTCACGACCA
CAACCACTACCCCTCCTCCAACCACAACCACGACTCTTCCTCCAACTACA
ACCACAACCACTACCCCTCCTCCAACTACAACCACTACCCCTCATCCAAC
TACAACCACTACCACTCCTCCAACTACAACCACTACCCCTCCTCCAACTA
CAACCACTACCCCTCCTCCAAGTACAACCACTACCCATCCTCCAACTACA
ACCACTACCCCTCCTCCAACTACAACCACTACCCCTCCTCCAACTACAAC
CACTACCACTCCTCCAACAACAACCACTACCCCTCCTCCAACTACAACTA
CTACCCCTCCTCCAACTACAACCACTACCCCTCCTCCAACTACAACCACT
ACCCCTCCTCCAACTACAACTACTACCCCTCCTCCAACTACAACCACTAC
CCCTCCTCCAACTACAACCACTACCACTCCTCCAACTACAACTACTACCC
CTCATCCAACTACAACTACTACCCCTCCTCCAACTGCAACTACGACCACT
ACCCCTTCTCCAACTACAACTACAACTACAACCACTACACCTCCCCCAAC
TACGACCACAACCACTGCCCTTCCTCCAACTACAACTACAACCACTACCC
CTCCTCCAACTACAACTACAACCACTACCCTTCCTCCAACTACAACCACT
ACACTTCCTCAAACTACAACCACTACTCTTCCTCCAACTACAACCACAAC
CACTACCCCTCCTCCAACTACGACCACTTCCCCTCCTCCAACTACGACCA
CTACAACCATCTCTCCTCCAACCACAACCACTTCCCCTCAATCAACTACT
ATCACTTCTCCTCCAGAAGACTCGACTCTTACCATTACAACCTCAACGAA
TACAACAACACCGGAGCCTGTAATCTTCGCAAACAAtatcatattcaaat
ttgttgACGATTACTCGTCTACCATCATTAAAGCAGGTGGGAAAGATGCA
GCTGAACAGGCCATTTGTGAGAATTGTCGAGACGAGTTGAATATACCTGA
GAAGGATTTCCATAATTGTTCTATCAGTGAAGGCAGTGTCAAAGTGACGT
TCATTATGAATCAAACAGCCTTCTTCGCCAACCACACCGTTCGTAAGTTG
AATATGATGGTTAAAGACGATCTCTTCCAAGTCATGATCGGTGGCTATCG
GTTGACAACAAAACCAGGATCGGTCTTGATAGACAGTGTCATGCAAACAG
CATCATCTGATCAGCAAAACACACCATCACCTGTGATATCGGCAAATACC
GACACCGACGGAGATGACGACGATGATGACGGTTCTTTGATCGCAATCGT
TATCTTAATCATTATCATCATCCTAATCATCATTCTGGTCCTCATTTTAT
TGTGGATGATCAGAAAACGAAAAACTATCACCGATGAGAAGGTTTGTAAA
TATCTTTTATATATCAAGAACGAGCTGATGTTGAACTGACAATATCAGAA
GTGTCTTATCTGATCTCAATATTATCCATTATGTCTTTTTATAACGAATG
CTCCATACAAAGCACACACAAAATAAACGGCAAGAGGTATATTCTAGCCT
TTTTAATACATAATCAAGGGCATAAATATCTAAATTGAGTATTAAGTAAC
AATTAACAAGATCTGTTTCGATTATTTTCAGCAGCCTGACGAAGAAGCAA
GCAGAGGGGCAACATCCTTATCAGCAGAGACAAACGACACTTTTGACAAC
GGTAAGGGTGATTTATTTCTCAAAGTATAATAGGAAAGATTCTAGATTCT
AATCATTTCTGAACAATTGGTTAGCAATAGGAGTGGGGTAGAACGCTTAG
CAGTTTTCAAAGAGGCGAAAAGTGATACACGCTCAATTCGATGTAGGTGG
CGCACGGATGTTTGCAAATGATCTAATTAATTCCTTTATTTACAGAATTG
AAGAGTGAAGCAACATTGGGTCGAATCAACTTTGGCTCCAATTTTAACGA
TGATGAAGTCCATGTAAATGAACAATGGCAGGGGCTGAGTCAGATACAAT
ATTTGTATGGAACCGACAGAGAATGGAAATTCGAAGATGACGAAATATCG
ACAGTTGATGTGGACGCGACGAGTCGTATTCGATTCTTGTTTGAAAGTCA
GAACTCCTTACGACATCTTATCGACGAGATGAAAGAGGGTGACGAGGGGC
GAACTATTTATGATGAAGATGGAACTGAAATGGAAACATACCGTTCAAAT
GGCGGAGGGGCGGAAAACCCACCATCCTCGGGCGCAAGTGATGATAAtca
agatgaaaatgaaaataacgaTGACGAAATGGATAATACCAATGAAGAGG
ATAATGATAGTGATGATGATTCTAGTCCTCAAAGTAGTAGCCCTAACAAA
GAACCACCTGCTCGGCCACCGCCCCCAGGACGCCCGAAGCGCCCTCTTCC
ACCATCAAGGGATTCTTCAAATGTGTGATAAGAACTGTTTTAAGATTAAT
TTTAGTAAATATTTTGTACATAAAGAGTATTTTTATGAGTAGAgataaaa
atatatgaaaatgaTAATGTAATATTTCTACCTTGTCATGCGTTGGTTGA
TTTTTAAGTCCCCCAAAAAAGAATAGATGAAATCGTTGGCCCAATTCGAA
AATTTGGTAGAAAAAGTCTTTTTAGTTGGTACCCTCGAAGAAAATCTCCC
CCTCCGTCTCTTCGAACATTTAGAAATCGGGAATAGGTCACAATACACTT
TTTAACGATATTTTATCCAAATATTTATGAAAAGTCAAACTTAGAAATAT
GGTTAACGATACTAAAGACTACTCATTCTCAAAATTTGTGTTCGCACAAC
ACGAGAAGGGAAGAAAGTTATTCTTAATTTTGCTCAAAAAGGCTTTTAAT
GCAAAGTCAGAAGTCTTTtacaaatacagttgacgctctttaattcgatc
ttcaaagagaattggattttcatcgaataaggggccttatcgaataaagg
agcgtcgtttatgagagtttcctgttgacggggactttcaatattatcga
ataagggagcctatcgaatagtagaacgtcgaattagagggCGTCAACAA
TAAGTTTTTTTCCTTGATTACACCAAACAGACTATTAAAAATTAACTAGC
CACCATTATGGAATAAAGTGTTTGAGATACGGACTTCTTACGCAAAACCG
AACGTTTTCTTCTGAAGAAACtttggcgggaatttgatgTTACCGCTTAA
AAGCGTGACTTAAGGCATGAAATAACATAAATTCAGGAAATATGTATTCT
CGATCATTGAACggttattttataagaatgttccaTTTCCATTTCATCGT
GGAAATTCTTGAATTCTGGGGggaatcatcctaaaatattcttacggtat
tagTATA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00002066TCONS_00002066Clytia hemisphaericatranscript
TCONS_00002067TCONS_00002067Clytia hemisphaericatranscript
TCONS_00002068TCONS_00002068Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00002066-proteinTCONS_00002066-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:757659..761365 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.03	0.03	0.19	0.17	0.08	0.04	0.14	0.1	0.04	0.08	0.07	0.06	1.27	1.48	0.06	0.04	0.18	0.09	6.04	5.53	0.48	0.24	0.29	0.26	0.82	2.27	0.06	0.06	0.03	0.03