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TCONS_00002068 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002068
Unique NameTCONS_00002068
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2741

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002068 ID=TCONS_00002068|Name=TCONS_00002068|organism=Clytia hemisphaerica|type=transcript|length=2741bp
ACTACCCATCCTCCAACTACAACCACTACCCCTCCTCCAACTACAACCAC
TACCCCTCCTCCAACTACAACCACTACCACTCCTCCAACAACAACCACTA
CCCCTCCTCCAACTACAACTACTACCCCTCCTCCAACTACAACCACTACC
CCTCCTCCAACTACAACCACTACCCCTCCTCCAACTACAACTACTACCCC
TCCTCCAACTACAACCACTACCCCTCCTCCAACTACAACCACTACCACTC
CTCCAACTACAACTACTACCCCTCATCCAACTACAACTACTACCCCTCCT
CCAACTGCAACTACGACCACTACCCCTTCTCCAACTACAACTACAACTAC
AACCACTACACCTCCCCCAACTACGACCACAACCACTGCCCTTCCTCCAA
CTACAACTACAACCACTACCCCTCCTCCAACTACAACTACAACCACTACC
CTTCCTCCAACTACAACCACTACACTTCCTCAAACTACAACCACTACTCT
TCCTCCAACTACAACCACAACCACTACCCCTCCTCCAACTACGACCACTT
CCCCTCCTCCAACTACGACCACTACAACCATCTCTCCTCCAACCACAACC
ACTTCCCCTCAATCAACTACTATCACTTCTCCTCCAGAAGACTCGACTCT
TACCATTACAACCTCAACGAATACAACAACACCGGAGCCTGTAATCTTCG
CAAACAAtatcatattcaaatttgttgACGATTACTCGTCTACCATCATT
AAAGCAGGTGGGAAAGATGCAGCTGAACAGGCCATTTGTGAGAATTGTCG
AGACGAGTTGAATATACCTGAGAAGGATTTCCATAATTGTTCTATCAGTG
AAGGCAGTGTCAAAGTGACGTTCATTATGAATCAAACAGCCTTCTTCGCC
AACCACACCGTTCGTAAGTTGAATATGATGGTTAAAGACGATCTCTTCCA
AGTCATGATCGGTGGCTATCGGTTGACAACAAAACCAGGATCGGTCTTGA
TAGACAGTGTCATGCAAACAGCATCATCTGATCAGCAAAACACACCATCA
CCTGTGATATCGGCAAATACCGACACCGACGGAGATGACGACGATGATGA
CGGTTCTTTGATCGCAATCGTTATCTTAATCATTATCATCATCCTAATCA
TCATTCTGGTCCTCATTTTATTGTGGATGATCAGAAAACGAAAAACTATC
ACCGATGAGAAGCCTGACGAAGAAGCAAGCAGAGGGGCAACATCCTTATC
AGCAGAGACAAACGACACTTTTGACAACGAATTGAAGAGTGAAGCAACAT
TGGGTCGAATCAACTTTGGCTCCAATTTTAACGATGATGAAGTCCATGTA
AATGAACAATGGCAGGGGCTGAGTCAGATACAATATTTGTATGGAACCGA
CAGAGAATGGAAATTCGAAGATGACGAAATATCGACAGTTGATGTGGACG
CGACGAGTCGTATTCGATTCTTGTTTGAAAGTCAGAACTCCTTACGACAT
CTTATCGACGAGATGAAAGAGGGTGACGAGGGGCGAACTATTTATGATGA
AGATGGAACTGAAATGGAAACATACCGTTCAAATGGCGGAGGGGCGGAAA
ACCCACCATCCTCGGGCGCAAGTGATGATAAtcaagatgaaaatgaaaat
aacgaTGACGAAATGGATAATACCAATGAAGAGGATAATGATAGTGATGA
TGATTCTAGTCCTCAAAGTAGTAGCCCTAACAAAGAACCACCTGCTCGGC
CACCGCCCCCAGGACGCCCGAAGCGCCCTCTTCCACCATCAAGGGATTCT
TCAAATGTGTGATAAGAACTGTTTTAAGATTAATTTTAGTAAATATTTTG
TACATAAAGAGTATTTTTATGAGTAGAgataaaaatatatgaaaatgaTA
ATGTAATATTTCTACCTTGTCATGCGTTGGTTGATTTTTAAGTCCCCCAA
AAAAGAATAGATGAAATCGTTGGCCCAATTCGAAAATTTGGTAGAAAAAG
TCTTTTTAGTTGGTACCCTCGAAGAAAATCTCCCCCTCCGTCTCTTCGAA
CATTTAGAAATCGGGAATAGGTCACAATACACTTTTTAACGATATTTTAT
CCAAATATTTATGAAAAGTCAAACTTAGAAATATGGTTAACGATACTAAA
GACTACTCATTCTCAAAATTTGTGTTCGCACAACACGAGAAGGGAAGAAA
GTTATTCTTAATTTTGCTCAAAAAGGCTTTTAATGCAAAGTCAGAAGTCT
TTtacaaatacagttgacgctctttaattcgatcttcaaagagaattgga
ttttcatcgaataaggggccttatcgaataaaggagcgtcgtttatgaga
gtttcctgttgacggggactttcaatattatcgaataagggagcctatcg
aatagtagaacgtcgaattagagggCGTCAACAATAAGTTTTTTTCCTTG
ATTACACCAAACAGACTATTAAAAATTAACTAGCCACCATTATGGAATAA
AGTGTTTGAGATACGGACTTCTTACGCAAAACCGAACGTTTTCTTCTGAA
GAAACtttggcgggaatttgatgTTACCGCTTAAAAGCGTGACTTAAGGC
ATGAAATAACATAAATTCAGGAAATATGTATTCTCGATCATTGAACggtt
attttataagaatgttccaTTTCCATTTCATCGTGGAAATTCTTGAATTC
TGGGGggaatcatcctaaaatattcttacggtattagTATA
Run BLAST on NCBI

transcript from alignment at sc0000018:758188..761365+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002068 ID=TCONS_00002068|Name=TCONS_00002068|organism=Clytia hemisphaerica|type=transcript|length=3178bp|location=Sequence derived from alignment at sc0000018:758188..761365+ (Clytia hemisphaerica)
ACTACCCATCCTCCAACTACAACCACTACCCCTCCTCCAACTACAACCAC TACCCCTCCTCCAACTACAACCACTACCACTCCTCCAACAACAACCACTA CCCCTCCTCCAACTACAACTACTACCCCTCCTCCAACTACAACCACTACC CCTCCTCCAACTACAACCACTACCCCTCCTCCAACTACAACTACTACCCC TCCTCCAACTACAACCACTACCCCTCCTCCAACTACAACCACTACCACTC CTCCAACTACAACTACTACCCCTCATCCAACTACAACTACTACCCCTCCT CCAACTGCAACTACGACCACTACCCCTTCTCCAACTACAACTACAACTAC AACCACTACACCTCCCCCAACTACGACCACAACCACTGCCCTTCCTCCAA CTACAACTACAACCACTACCCCTCCTCCAACTACAACTACAACCACTACC CTTCCTCCAACTACAACCACTACACTTCCTCAAACTACAACCACTACTCT TCCTCCAACTACAACCACAACCACTACCCCTCCTCCAACTACGACCACTT CCCCTCCTCCAACTACGACCACTACAACCATCTCTCCTCCAACCACAACC ACTTCCCCTCAATCAACTACTATCACTTCTCCTCCAGAAGACTCGACTCT TACCATTACAACCTCAACGAATACAACAACACCGGAGCCTGTAATCTTCG CAAACAAtatcatattcaaatttgttgACGATTACTCGTCTACCATCATT AAAGCAGGTGGGAAAGATGCAGCTGAACAGGCCATTTGTGAGAATTGTCG AGACGAGTTGAATATACCTGAGAAGGATTTCCATAATTGTTCTATCAGTG AAGGCAGTGTCAAAGTGACGTTCATTATGAATCAAACAGCCTTCTTCGCC AACCACACCGTTCGTAAGTTGAATATGATGGTTAAAGACGATCTCTTCCA AGTCATGATCGGTGGCTATCGGTTGACAACAAAACCAGGATCGGTCTTGA TAGACAGTGTCATGCAAACAGCATCATCTGATCAGCAAAACACACCATCA CCTGTGATATCGGCAAATACCGACACCGACGGAGATGACGACGATGATGA CGGTTCTTTGATCGCAATCGTTATCTTAATCATTATCATCATCCTAATCA TCATTCTGGTCCTCATTTTATTGTGGATGATCAGAAAACGAAAAACTATC ACCGATGAGAAGGTTTGTAAATATCTTTTATATATCAAGAACGAGCTGAT GTTGAACTGACAATATCAGAAGTGTCTTATCTGATCTCAATATTATCCAT TATGTCTTTTTATAACGAATGCTCCATACAAAGCACACACAAAATAAACG GCAAGAGGTATATTCTAGCCTTTTTAATACATAATCAAGGGCATAAATAT CTAAATTGAGTATTAAGTAACAATTAACAAGATCTGTTTCGATTATTTTC AGCAGCCTGACGAAGAAGCAAGCAGAGGGGCAACATCCTTATCAGCAGAG ACAAACGACACTTTTGACAACGGTAAGGGTGATTTATTTCTCAAAGTATA ATAGGAAAGATTCTAGATTCTAATCATTTCTGAACAATTGGTTAGCAATA GGAGTGGGGTAGAACGCTTAGCAGTTTTCAAAGAGGCGAAAAGTGATACA CGCTCAATTCGATGTAGGTGGCGCACGGATGTTTGCAAATGATCTAATTA ATTCCTTTATTTACAGAATTGAAGAGTGAAGCAACATTGGGTCGAATCAA CTTTGGCTCCAATTTTAACGATGATGAAGTCCATGTAAATGAACAATGGC AGGGGCTGAGTCAGATACAATATTTGTATGGAACCGACAGAGAATGGAAA TTCGAAGATGACGAAATATCGACAGTTGATGTGGACGCGACGAGTCGTAT TCGATTCTTGTTTGAAAGTCAGAACTCCTTACGACATCTTATCGACGAGA TGAAAGAGGGTGACGAGGGGCGAACTATTTATGATGAAGATGGAACTGAA ATGGAAACATACCGTTCAAATGGCGGAGGGGCGGAAAACCCACCATCCTC GGGCGCAAGTGATGATAAtcaagatgaaaatgaaaataacgaTGACGAAA TGGATAATACCAATGAAGAGGATAATGATAGTGATGATGATTCTAGTCCT CAAAGTAGTAGCCCTAACAAAGAACCACCTGCTCGGCCACCGCCCCCAGG ACGCCCGAAGCGCCCTCTTCCACCATCAAGGGATTCTTCAAATGTGTGAT AAGAACTGTTTTAAGATTAATTTTAGTAAATATTTTGTACATAAAGAGTA TTTTTATGAGTAGAgataaaaatatatgaaaatgaTAATGTAATATTTCT ACCTTGTCATGCGTTGGTTGATTTTTAAGTCCCCCAAAAAAGAATAGATG AAATCGTTGGCCCAATTCGAAAATTTGGTAGAAAAAGTCTTTTTAGTTGG TACCCTCGAAGAAAATCTCCCCCTCCGTCTCTTCGAACATTTAGAAATCG GGAATAGGTCACAATACACTTTTTAACGATATTTTATCCAAATATTTATG AAAAGTCAAACTTAGAAATATGGTTAACGATACTAAAGACTACTCATTCT CAAAATTTGTGTTCGCACAACACGAGAAGGGAAGAAAGTTATTCTTAATT TTGCTCAAAAAGGCTTTTAATGCAAAGTCAGAAGTCTTTtacaaatacag ttgacgctctttaattcgatcttcaaagagaattggattttcatcgaata aggggccttatcgaataaaggagcgtcgtttatgagagtttcctgttgac ggggactttcaatattatcgaataagggagcctatcgaatagtagaacgt cgaattagagggCGTCAACAATAAGTTTTTTTCCTTGATTACACCAAACA GACTATTAAAAATTAACTAGCCACCATTATGGAATAAAGTGTTTGAGATA CGGACTTCTTACGCAAAACCGAACGTTTTCTTCTGAAGAAACtttggcgg gaatttgatgTTACCGCTTAAAAGCGTGACTTAAGGCATGAAATAACATA AATTCAGGAAATATGTATTCTCGATCATTGAACggttattttataagaat gttccaTTTCCATTTCATCGTGGAAATTCTTGAATTCTGGGGggaatcat cctaaaatattcttacggtattagTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001086XLOC_001086Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002068-exon-sc0000018-1491911889:758188..759399TCONS_00002068-exon-sc0000018-1491911889:758188..759399Clytia hemisphaericaexon
TCONS_00002068-exon-sc0000018-1510915933:758188..759399TCONS_00002068-exon-sc0000018-1510915933:758188..759399Clytia hemisphaericaexon
TCONS_00002068-exon-sc0000018-1575043694:758188..759399TCONS_00002068-exon-sc0000018-1575043694:758188..759399Clytia hemisphaericaexon
TCONS_00002068-exon-sc0000018-1491911889:759643..759709TCONS_00002068-exon-sc0000018-1491911889:759643..759709Clytia hemisphaericaexon
TCONS_00002068-exon-sc0000018-1510915933:759643..759709TCONS_00002068-exon-sc0000018-1510915933:759643..759709Clytia hemisphaericaexon
TCONS_00002068-exon-sc0000018-1575043694:759643..759709TCONS_00002068-exon-sc0000018-1575043694:759643..759709Clytia hemisphaericaexon
TCONS_00002068-exon-sc0000018-1491911889:759904..761365TCONS_00002068-exon-sc0000018-1491911889:759904..761365Clytia hemisphaericaexon
TCONS_00002068-exon-sc0000018-1510915933:759904..761365TCONS_00002068-exon-sc0000018-1510915933:759904..761365Clytia hemisphaericaexon
TCONS_00002068-exon-sc0000018-1575043694:759904..761365TCONS_00002068-exon-sc0000018-1575043694:759904..761365Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:758188..761365 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0280317 0 0.19067 0.124567 0.0756915 0.000144445 0.144378 3.68952e-06 0.000110766 0 0.0710349 0.0280476 0 0.0462425 0.0646196 0 1.11614e-09 0.0196691 0.506742 0.779613 0 0 0.0908249 2.53364e-05 0 0.150824 0.0587618 0.0615359 0.0311434 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002068 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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