XLOC_000520 (gene) - C. hemisphaerica

Overview
NameXLOC_000520
Unique NameXLOC_000520
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000005:1354866..1363302-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_000520 ID=XLOC_000520|Name=XLOC_000520|organism=Clytia hemisphaerica|type=gene|length=8437bp|location=Sequence derived from alignment at sc0000005:1354866..1363302- (Clytia hemisphaerica)
TTTTTATTTTATATTTGTGAAAATCAATTTGTAATTAAAAAAAGTTCTCA CAGAAAATAACACAGATGCAAAATTAAAGGTGTAACCTGAGATGGTGGTG CACCCTTGGGCTTTGGCTTTGCCCATTCAGGTAGCTCTTTATCAGGAACG CATTGCTTTTCCATTTTATTATCTCACCCTTGCCGCAGGAGGGTCACGTT TAAGTTTTTCTTGTTTCTCAGAATTATCAGTTTTGTCAGTTACCCTAAAA AACAGAATTGAAATTGAACCTAAGTAAGGGTTTAATGAATTACATTCCCC TTTAAACAACTTTTTCATTTGTATATAATAAGTCACTGTGTATATAAACT AAAATTTTTAATATGAGAACTTTAGAAAATGAGAAAGACTTTTTTTGAAC AGCCAGGTAAGCACAAAATCTTTAAAGATTGAATGAAAATTAGGAATCTC CCCAAACTCAGCATAAATTCGTGCAAAATAAATATAAAAGGCATTTTTTA CCACAAAAACCCCTCTAATATTTTATCTAGAAAAGTTGGAATTTTTTGCA GTATATGTGCATTTATTAGGATCTTCTTATTTTACAATCTCTTAAAAACG GTGTCAGAATCAGATGAGGGATGTCAACAACAGTCTTTTAAATAACTATA TTTCACCTGATTTCACCAACAAAATAAAAACAAACAGCAAGAAAAAACCA TGTGCAAGTCCAGAAAATTTTTATTAAATAAAATGTTTACAACCTCAAGA TGTCAAGTTAAGACTGTTGTAAGAGAGGAACCGTCAACTGCTCTAACTTG GGACGATTGGTGGTAACAAGGGACTGGTTGATATCTGGTCTGTATTTTCA CTTACTGTTAAAATCTTTTTAATGACAAATTTGTTTTGATAACTCCACCA AGTTTATCAATCATACCGTGAAAAAGGGTAACTTGCATCAGTGGAGGCTA ACATGCATAGCCCTCAAATGAAAGGCCCGGCTGGTCATTAAAATACGAAA ATAAATCGAAACAAAAATGGTAGAGTNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNCGGAGCTGCGTATGTGTATTTTAATGACCAGCCAG GTCATTCATTTGAGGGCTATGCATGTTAGCCTCCACTGATGCAAGTTACC CTTTCTCACGGTACTTCTTCGTTACGCTTAGAGTGCACAGACACTTGCGG AGTGCACAGACACTCGCGTGTGTTCCACTACGGATTTTTTTCATATTTCG ATTTAAAAGCCTACTCGATGCGAAAGAGAAATCGTGTATTTTTTAATACG GCGTTCATTATTAACTCAAATCAAATGACTTTGGAGGTTCCGTGAAATGG TGGCCGAATTGCCGTCCCATGTTTTGTCAGATAGTCCCAAGTTAGAGCAG TTGACGGTAATACCGCAAAGTAGGGTAACTTGCATCAGTGGAGGGAAACT TGCATAGCCATCAAATGCCTGACCAACCAAAAGCAGCAAAATTTCAAAAC AAATGAACTACGCAGCTTTGCTCGCAGCTCAACTCTACCATTTTTGTTTT GATTTAACTTTGAATTTTAATGACCAGCCAGGTTATTCATTTGAGAGCTA TGCATGTTAGCCTCCACTGATGCAAGTTACCCAAGCTCACGGTACGGAGC AGATAATTTACGACCCAAATGGCTGGAGTAATTTACTATGCAGAACTGAG TCAATAGGTTGTCACATTCACCTAAACGACTATACTAGAAACTAGATTAT CCTGGACTGTACAAATAATTTCCACCATTTTTCAGAAAAATGGCTGATTG TTCATTGTTGTTTGTGAATCAATCTGTTCTCACCACTTTGAAAGAAGTTA AATAATAAAAAAATTCATGATGATTGTAATCGTATGACACTAGTCATGCA AACAACCTGACAACAAACAAGACGATAATAAATAAATGTACAACAACATC AAATTCATGCTATTTTTCTAAATTTCAATTTTTTTTAACTGTTAGCTGCC CTGGCTATTGTCTGATTGTGAAAAATGAAGACAATAAACTATAAATTTAA GAAAAGGAAAAGCAGCCCTTTTCATTATTACTTAATGTTTTTGCCCTCTT GCAACTTGCAAGACTTGACTTTCCATTCAAGGTCTTTTTTTTAACCAAAA TTCCAAAATGTTGCATGACATGATCAAAGTCCAGTTGAGGAAAAAAAGTT TGTTATGATTCTAAACGCCATACACCAAAACATCGTTTCCCGCCTATTTC AAAGTATAGCTTTTAGAAGTCCCCTAATTTAACAACACCCAACTAGAATC CGGGGGTAAAATGGAGCATACGGTTTTCTAAATAACCACCATAAGGGGCC GTAACTAATAACAAATACTACTTAATTTCAGTTTGACTAAGATTGCATTA ATTTTGATCAAAAATGATGGTAATTTATTTTGAAGAACATTTTCAAATTA AGATATTTGTGAAACTGTCAACACCCCCGTCATTGAAAATGGGTAATCCG ACCGATTGTTTTTACCAATTTATTATCAAGCAGTATCTTTCTGCTTTTGT CTATCAAGAAATGATGACTTAAAATGAGATAATTAGAAAGAAAGCTAAAA ATCAAAGAGATCTATCAGTTTGACATATTTTGAAGACGGGGGTCATTGAT AAATTCATCAACAAACATGTTATGCAAAACTCGGGAAAAGAGATCAATTG CAAAAAACTACGTTTTGGGGGCCAAAATCAGGTTATTTCACTCATGGAAA GGATATGAAAAATTGTATTTTTCAGTTTTCGAAACTAAAAACCAAGGAAA AATGTCGTGGTTCGTCATTTAGTAGCTACCCCCTAACTCAATTTAAATCC AATCATGGAAAGAAGAGATCAAACTTGTAGAATCAAAATTGATTTAATCT CAAACCATCCCTGTATTGTCCTTTATTTTATACAAAACAATTCGCATTTT TTTCTCTTATTATAACGAACTTGAGCAGCACATCGTCAAGTACTCGCCTC GATTGGTTATCAATTTCTCTCCAGAGAAAAAAATTCTGCAAAAACTTCTA CATTTTTCATCGTAAAACTCACACATCAAGATGCAAGCCGTCAAATCGAA ATTAGCTTCATTGAAAGCTAAATTGAAGGAATCCGAAGATGCAGCTAATG ATGCCGAAGCTGAACTCAACGAGATCAAAGAAAAAACAGAAGAAATGGAA ACTTTGGTAAGAAATTTCGTTTCATCTTTTGAAAATTTATTTATTCAAAC GAATATTTTTTGAGTCTGCAAATTAAATAGATTTATTTAAATTAACTTCA TAGCCGCGCTAGAGGACGTTAGTGATTTAAAAAGCCCTTGCTCGATTCCA TTATTATTGACCACTGTCATTTTCACTCTCTCTCTGAATATATAAGATTC AAAATATCAGATCACAACGCTTGTGGGTGGTGTGAATGCACCTTTATGTC CCTTCCCAGTCGAAAATCTGAAATATATCAGTCAGGGGTACGCACAGTGC AAGCCACAGGACAAATCAGAGTGCAGATTTAGAGACAGGGGTGTTTGTTT AGTTGTTTCCTTCAAATGCATAACACACATCTTTTGTCCTTTTGTAAAGA AATTCATCTGAATTGAAGTCATTACTGAAGGCCCTTACAGGAATGCGATG CCTAATAACAAATATGACATATAAGATTTTTTTACTTATTACTCCCAAAG CTATTAATAATGGTAAAATTGTGATATTTATCCTTATCTTTTCTGGTCAG AAGTCAGAATGAGGCAACGAAACGTAATTATTAGAATCTTTTGAGGTAAA CCATACCACAGACATGCTATTGCATAAAATAACTAAAACTTTGCTGTTTT GTAAACCCTTTGTAACATTATTACAAAAATCGTTTAGCTTAATATATAGA CGAAAAGATTACGAAGACAATATAAATTGCCTTAAAATATAATTTTTCTA TGTTGAAGGTATTCAGAAAACAGACTTAATTTTAACGTATGTGTTCTCCT AAGTCTTCTAAACAGCATTTTTCTTTTTTGCATAATTAGCTTTAATTGAA GAGATGAAGCTCTTGTATAAAATATAATTAATGTTGAAGGTATTCACTTG TTCATTGCTAAGAGAAACAGACTTTCTTAACATATGTGTTCTCCTAAGTC TTCTAGCAGCATATTTTTCCTTTTTTGCATAATTAGCTTTAATTGAAGGG ATAATGCATTTACTGTCGCTTAAATTTAATTAGCTCTAATGATTTTGGTT TAAAGATGCCAATTATCGATTATAAATGACAATTCTTTGTGTTGTAATAC CTTTGCTATTATCATTTTTTCTTTACTAACTTATTTTTCCTAAATATGGT TGGAAATAAGGGGGTCATCCTCAGATTATCAATAATAGGGTTTAACTCAC TAACATTTACGATCTCAAATTTTTAGACAATTTTTTATACGGTAGTAAAA TATATTATGATACATACAAGAGATTATACAAAACAAAGGAAATATTGACT ATGAAAAATCATCATATTTGACAAGCTGAATTAAATCATTATGTCTCCTC ATGATGCTAATCCATTTTCTCTCCTCCGCTGGGGTTTGGGACAATAGCCA GATTACTATACTTGACAAAATATTTCAAGTGCGATGGAGAGTGCTAAATA CAGTATATGATAGTAAAATCGGTTTAAAATCTTTATAAATGACAGAAATA TAATAACCGTGTCCGTCATACTAAGCTATTATGAAAAAAGAGTCAACGAT TAAATAAAAGAGTAGTGGAGCCCTATATAACACAAAATGTAAGGAATTTA AAGCTTTTCTACTGTGCTTTAAAAAAATACGAATTAGATTGATTAAGACT AAAAGATAATGTGAAATCTCTCATCTGTATTATGTAAACTAGCAGGTGCC ATCACGAGGTAAATCTTTTTGTCACAGTAAATTATTGAGATCATAGATAT ACCTTGATTAAATTGTCTGCATGTCGAATCCAAAGAGATAATACTAAAAC GAAATCATGAACCTTGAAAATTTTACACGCTTTTTTTATAAGAATATACT TTGATATATGATGAAAATGGCCAAAAAATTAAGAGTATGCTAAGAATATC ACCATCATGGAATCAGGCAACAAACCCTAAAAATGTCACTTCAAGAACAA TTTTTTTAACTTTTGAATTACCAATTATTCCAAAGTAAGGTTTAATACTT TCACAAAAATGCCATTTTTATGCTTCAGATGTTTATTTCTTGTTAAATTT AGTTTGAATTTCGATTCTAACATAAGAATACCGTACGAATATTTTAGGAT GATTTTTCCCAAAAAGTTAAGAATCCAGGATGAAATGAAAAGCACCATTC TTATAAAAAAAGCGTGCAATGGAGACTTATTTGGGGTTGAGTCCTATTTC GTATGTTATTGCCCAGGCTTGGTTTTTAACCATGGTCGTACCTATGTGGA TATTTTAGTGGCAAACAGTTTATCTTACACCCCTGTCTCACAGCCGCGGT GGAACTTTTACCGAGTTTATGTATCGGAGGATATCGAGGGCGACGGTAAG TGAAATCGATACAAAACAAAGTCGATAGTTGATGTACGGCTCTATATCGC CTTTGCTCACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNTGTTTTTACCGTCGTCGAGCAAAGTGGACGGT GATTTTGGAGACATGTCAACTTTGCTTTATACCGTCCCCCTCGATTTATC TCGAATACATAAACTCGCTATTTTCCTCAGTGGGGATAAGAGTTCCTATT GAAATCCCAATGGAGATAACAATTCTATTGCTCCAATGTTAATAAATCCA GTGGAAATGATTTTGGAGTGCATTTTTTAAACATTGAATTTTAAGGTCAA TTTTCCAGTGGGCTGAAATTCTAGGGTATTTTCCCATCGGGGACGAAATT TTTTCTAGTGGGGCTGGGGTCCCAGCGGATCCGTGACACAGGCGTGTTAT CTTGAAAACACAATTCGAAATTTCAACAAGCTCGCCATTTCCAGACTTCT TTAGTTTAATGTCCAGTTTATACGACACTCTTCAATCGTCAGCGCAAGCC AGTATGACTTTTCTCTAAATCCAATTCCTTCGTCTACATACCAAAGAACG ATAAATAGAATTTACCTCTAAAAAAACCACCCAAGCACGTAACTCGTTTT AGCGCTCAGACAAGAATAATGACGTTATGGACTTATGATGGATGCTGGTA TATATAGGGCCTTGCCAGGTATAACCTTGTTTCACTGAGATCCTTTTTCC TAGTTGATAGTTAAAGGAAAACGAAAAACTGAAAGGCGATTGCCTAAAAT GTTAAATTCGATGCAAAACTCATTGAAACTTTCGATCCCATTGGGAAAGT CACTGGTGATTTTGTAATGGATTCCGTGATTTTGTAATGGATTTTTCGGA AGGGAGGGATTCCATCGGTTTAGTGACCTTGGAAAAAAATGAGAGATTGC CCCGTTGGCTGTTTTTAATTTTTTATTTGTCATTTTACAAGAATAAACTG TTAATATCTTTTGCTTTTATTTACCTTTAGGGAGCTGATCTCTCGACCAA GTTAGGTGAAATTGAGGATAAACTCGACGAAGCAGAATCACAATTAAACG AACTCACTGCCAATGTAGCAGAAAACGAAAAAACATCCGACGAAACAGAT CAAGCAAAAAAGATTATGGAAAACAGAGGTCGAAATGATGCTAGCAAAAT TGAAGAACTCGAACGAGAATTAGAAACATTGAACGAAATGATCAAAGAAA ATGAAGGGGAATATGAAGAGGACTTGACATTAGGTTCGTATACAGTTTTC TATTCTCAAAATGCAAAGAAGGAGATTTTGGCAAAAATCTTTTGAAATTT TAACAAATATTTACTAAAGAGTGGGGGGTGTTGAAGACATGATGCAAAAT AAAATAATTTTGGGTTAATCAGATTGGGCCTTCTTTGAAATGTGGAAGCA TTTGTGCGTCAGTCAGAAGTTTTGGTACAGCATCTTTCACCAGCGCTCAT AGATACTTCTGTTTTCTGTTTCCCAATAATGGACTTGCCTTTTCCATAGT TATCATGAAAATTCCTTATCAAATCTTGTCATATTCATTTCGCTACTTCA TTTTTATCTAGTAACCGAGCTTGAAGAACAATTAGACGAAGCAGAAGAAC GACACGAGTCCGCTGATGCCAAACTGAAAGAACTCGATTCTCAATATATA TTGATCGGAAACAGTCATAAAAGTATGGTGACGAACGAAGATGCAGCTGC CGATCGTGTAAGCCAAGCTGATTCAAAAATCTCTGAAATGGTTAGCCAAG TCGACGAAAAAGAAGAATTGGCAACCGCTATGGAAGCACAATGGAAAGAA CTTGAAGACGAAATGGATAAACTTGCGATGGAGGAAGAAGAATCAAAATT AACGTTCGAGAAAAAACAAGAAGAACTTCAACTGGCTCTTGCAGAAATTA ACGATTTGTAAACATTTGTTTTTTTTAGTCAACTCTAGATAATATCTTTG CATACGCTTCCCCTATTTCCTTGGGTACTCAGCATTGAATTTTCTACAAA TTCAAAGATTAGATACCCTAACTCATGGTGTACGCGAAACTTTACTTTTC ATTTTTCCTCATTTTTATAAAAATAATTTTGTAAATTTTTTGATACCTTA TTTTTCTCTTTTTGTATGTATTTATTGTATGAAAATTTAAGACTCCCGTT TTTTTTGTATTATCATTTTTGACCGCACCTGTAAAATAGCAACTTTTTCG TTTAAACCAGACAAAGAATAGGAAAATTCAAATATTAATATTTCTTTTCT GTCATAATCTTCAACAGACTTAGCGCCACCGGTAGCATCGTCTTGTACGG TTAAAAAATTTTAACACCCTCTTGAATACTTGAAATCATGCGTTGAATTC GGGCTCGTGACAAAACTTTCAGATTTACGGCATGTCGGTGAAGTTAATCG AGCACGCTGGGGAGACAACACAATTCAAAAGAGAACACAATTTGCTGTAA GAAGTGCTAGACCATGTATGAGCAACATCGAGGGACTCAATGTTATCATT ATCTACTCCTGACATTAGACAAACATTGCTCTAAGACAACTCATTTTAAA GACTTTTAGACGAAATCTCGAAAATGGAAAGACTAGCCTTATCTTAGACT TTCTCTTAAATATTCATCTTCCTATTTTCAAAGGGTTTAAAACTATGCCA CAATAACTGAAGGTACTGTAACTGTTTTTCTCAAATAGTTTATTTTCAAT TACTTTCAGAGGTTTACCCTGTACGCAGAAGAATTAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00000881TCONS_00000881Clytia hemisphaericatranscript
TCONS_00000880TCONS_00000880Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00000881-proteinTCONS_00000881-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:1354866..1363302 -
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
TPM2tropomyosin beta chain isoform Tpm2.2st Homo Sapiens
TPM3PREDICTED: tropomyosin alpha-3 chain isoform X2 Homo Sapiens
TPM4tropomyosin alpha-4 chain isoform Tpm4.1cy Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.22 0.59 0.41 0.4 33.81 25.78 329 339.67 117.39 120.51 27.2 36.1 461.48 453.17 0.7 0.41 336.37 440.89 783.45 632.21 688.23 639.93 348.5 392.23 299.27 345.68 255.51 168.19 1.87 1.14