TCONS_00000880 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000880
Unique NameTCONS_00000880
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1911

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000880 ID=TCONS_00000880|Name=TCONS_00000880|organism=Clytia hemisphaerica|type=transcript|length=1911bp
aaATCAGGTTATTTCACTCATGGAAAGGATatgaaaaattgtatttttca
gTTTTCGAAACTAAAAACCAAGGAAAAATGTCGTGGTTCGTCATTTAGTA
GCTACCCCCTAACTCAATTTAAATCCAATCATGGAAAGAAGAGATCAAAC
TTGTAGAATCAAAATTGATTTAATCTCAAACCATCCCTGTATTGTCCTTT
ATTTTATACAAAACAATTCgcatttttttctcttattatAACGAACTTGA
GCAGCACATCGTCAAGTACTCGCCTCGATTGGTTATCAATTTCTCtccag
agaaaaaaattctgcaaaaacTTCTACATTTTTCATCGTAAAACTCACAC
ATCAAGATGCAAGCCGTCAAATCGAAATTAGCTTCATTGAAAGCTAAATT
GAAGGAATCCGAAGATGCAGCTAATGATGCCGAAGCTGAACTCAACGAGA
TCAAAGAAAAAACAGAAGAAATGGAAACTTTGGGAGCTGATCTCTCGACC
AAGTTAGGTGAAATTGAGGATAAACTCGACGAAGCAGAATCACAATTAAA
CGAACTCACTGCCAATGTAGCAGAAAACGAAAAAACATCCGACGAAACAG
ATCAAGCAAAAAAGATTATGGAAAACAGAGGTCGAAATGATGCTAGCAAA
ATTGAAGAACTCGAACGAGAATTAGAAACATTGAACGAAATGATCAAAGA
AAATGAAGGGGAATATGAAGAGGACTTGACATTAGTAACCGAGCTTGAAG
AACAATTAGACGAAGCAGAAGAACGACACGAGTCCGCTGATGCCAAACTG
AAAGAACTCGATTCTCAATATATATTGATCGGAAACAGTCATAAAAGTAT
GGTGACGAACGAAGATGCAGCTGCCGATCGTGTAAGCCAAGCTGATTCAA
AAATCTCTGAAATGGTTAGCCAAGTCGACGAAAAAGAAGAATTGGCAACC
GCTATGGAAGCACAATGGAAAGAACTTGAAGACGAAATGGATAAACTTGC
GATGGAGGAAGAAGAATCAAAATTAACGTTCgagaaaaaacaagaagaac
TTCAACTGGCTCTTGCAGAAATTAACGATTTGTaaacatttgtttttttt
agtcaACTCTAGATAATATCTTTGCATACGCTTCCCCTATTTCCTTGGGT
ACTCAGCATTGAATTTTCTACAAATTCAAAGATTAGATACCCTAACTCAT
GGTGTACGCGAAActttacttttcatttttcctcatttttataaaaataa
ttttgtaaattttttgataccttatttttctctttttgtatGTATTTATT
GTATGAAAATTTAAGACTCCCGTTTTTTTTGTATTATCATTTTTGACCGC
ACCTGTAAAATAGCAACTTTTTCGTTTAAACCAGACAAAGAATAGGAAAA
TTCAAatattaatatttcttttctgtCATAATCTTCAACAGACTTAGCGC
CACCGGTAGCATCGTCTTGTAcggttaaaaaattttaacacccTCTTGAA
TACTTGAAATCATGCGTTGAATTCGGGCTCGTGACAAAACTTTCAGATTT
ACGGCATGTCGGTGAAGTTAATCGAGCACGCTGGGGAGACAACACAATTC
AAAAGAGAACACAATTTGCTGTAAGAAGTGCTAGACCATGTATGAGCAAC
ATCGAGGGACTCAATGTTATCATTATCTACTCCTGACATTAGACAAACAT
TGCTCTAAGACAACTCATTTTAAAGACTTTTAGACGAAATCTCGAAAATG
GAAAGACTAGCCTTATCTTAGACTTTCTCTTAAATATTCATCTTCCTATT
TTCAAAGGGTTTAAAACTATGCCACAATAACTGAAGGTACTGTAACTGTT
TTTCTCAAATAGTTTATTTTCAATTACTTTCAGAGGTTTACCCTGTACGC
AGAAGAATTAT
Run BLAST on NCBI

transcript from alignment at sc0000005:1354866..1360578-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000880 ID=TCONS_00000880|Name=TCONS_00000880|organism=Clytia hemisphaerica|type=transcript|length=5713bp|location=Sequence derived from alignment at sc0000005:1354866..1360578- (Clytia hemisphaerica)
AAATCAGGTTATTTCACTCATGGAAAGGATATGAAAAATTGTATTTTTCA
GTTTTCGAAACTAAAAACCAAGGAAAAATGTCGTGGTTCGTCATTTAGTA
GCTACCCCCTAACTCAATTTAAATCCAATCATGGAAAGAAGAGATCAAAC
TTGTAGAATCAAAATTGATTTAATCTCAAACCATCCCTGTATTGTCCTTT
ATTTTATACAAAACAATTCGCATTTTTTTCTCTTATTATAACGAACTTGA
GCAGCACATCGTCAAGTACTCGCCTCGATTGGTTATCAATTTCTCTCCAG
AGAAAAAAATTCTGCAAAAACTTCTACATTTTTCATCGTAAAACTCACAC
ATCAAGATGCAAGCCGTCAAATCGAAATTAGCTTCATTGAAAGCTAAATT
GAAGGAATCCGAAGATGCAGCTAATGATGCCGAAGCTGAACTCAACGAGA
TCAAAGAAAAAACAGAAGAAATGGAAACTTTGGTAAGAAATTTCGTTTCA
TCTTTTGAAAATTTATTTATTCAAACGAATATTTTTTGAGTCTGCAAATT
AAATAGATTTATTTAAATTAACTTCATAGCCGCGCTAGAGGACGTTAGTG
ATTTAAAAAGCCCTTGCTCGATTCCATTATTATTGACCACTGTCATTTTC
ACTCTCTCTCTGAATATATAAGATTCAAAATATCAGATCACAACGCTTGT
GGGTGGTGTGAATGCACCTTTATGTCCCTTCCCAGTCGAAAATCTGAAAT
ATATCAGTCAGGGGTACGCACAGTGCAAGCCACAGGACAAATCAGAGTGC
AGATTTAGAGACAGGGGTGTTTGTTTAGTTGTTTCCTTCAAATGCATAAC
ACACATCTTTTGTCCTTTTGTAAAGAAATTCATCTGAATTGAAGTCATTA
CTGAAGGCCCTTACAGGAATGCGATGCCTAATAACAAATATGACATATAA
GATTTTTTTACTTATTACTCCCAAAGCTATTAATAATGGTAAAATTGTGA
TATTTATCCTTATCTTTTCTGGTCAGAAGTCAGAATGAGGCAACGAAACG
TAATTATTAGAATCTTTTGAGGTAAACCATACCACAGACATGCTATTGCA
TAAAATAACTAAAACTTTGCTGTTTTGTAAACCCTTTGTAACATTATTAC
AAAAATCGTTTAGCTTAATATATAGACGAAAAGATTACGAAGACAATATA
AATTGCCTTAAAATATAATTTTTCTATGTTGAAGGTATTCAGAAAACAGA
CTTAATTTTAACGTATGTGTTCTCCTAAGTCTTCTAAACAGCATTTTTCT
TTTTTGCATAATTAGCTTTAATTGAAGAGATGAAGCTCTTGTATAAAATA
TAATTAATGTTGAAGGTATTCACTTGTTCATTGCTAAGAGAAACAGACTT
TCTTAACATATGTGTTCTCCTAAGTCTTCTAGCAGCATATTTTTCCTTTT
TTGCATAATTAGCTTTAATTGAAGGGATAATGCATTTACTGTCGCTTAAA
TTTAATTAGCTCTAATGATTTTGGTTTAAAGATGCCAATTATCGATTATA
AATGACAATTCTTTGTGTTGTAATACCTTTGCTATTATCATTTTTTCTTT
ACTAACTTATTTTTCCTAAATATGGTTGGAAATAAGGGGGTCATCCTCAG
ATTATCAATAATAGGGTTTAACTCACTAACATTTACGATCTCAAATTTTT
AGACAATTTTTTATACGGTAGTAAAATATATTATGATACATACAAGAGAT
TATACAAAACAAAGGAAATATTGACTATGAAAAATCATCATATTTGACAA
GCTGAATTAAATCATTATGTCTCCTCATGATGCTAATCCATTTTCTCTCC
TCCGCTGGGGTTTGGGACAATAGCCAGATTACTATACTTGACAAAATATT
TCAAGTGCGATGGAGAGTGCTAAATACAGTATATGATAGTAAAATCGGTT
TAAAATCTTTATAAATGACAGAAATATAATAACCGTGTCCGTCATACTAA
GCTATTATGAAAAAAGAGTCAACGATTAAATAAAAGAGTAGTGGAGCCCT
ATATAACACAAAATGTAAGGAATTTAAAGCTTTTCTACTGTGCTTTAAAA
AAATACGAATTAGATTGATTAAGACTAAAAGATAATGTGAAATCTCTCAT
CTGTATTATGTAAACTAGCAGGTGCCATCACGAGGTAAATCTTTTTGTCA
CAGTAAATTATTGAGATCATAGATATACCTTGATTAAATTGTCTGCATGT
CGAATCCAAAGAGATAATACTAAAACGAAATCATGAACCTTGAAAATTTT
ACACGCTTTTTTTATAAGAATATACTTTGATATATGATGAAAATGGCCAA
AAAATTAAGAGTATGCTAAGAATATCACCATCATGGAATCAGGCAACAAA
CCCTAAAAATGTCACTTCAAGAACAATTTTTTTAACTTTTGAATTACCAA
TTATTCCAAAGTAAGGTTTAATACTTTCACAAAAATGCCATTTTTATGCT
TCAGATGTTTATTTCTTGTTAAATTTAGTTTGAATTTCGATTCTAACATA
AGAATACCGTACGAATATTTTAGGATGATTTTTCCCAAAAAGTTAAGAAT
CCAGGATGAAATGAAAAGCACCATTCTTATAAAAAAAGCGTGCAATGGAG
ACTTATTTGGGGTTGAGTCCTATTTCGTATGTTATTGCCCAGGCTTGGTT
TTTAACCATGGTCGTACCTATGTGGATATTTTAGTGGCAAACAGTTTATC
TTACACCCCTGTCTCACAGCCGCGGTGGAACTTTTACCGAGTTTATGTAT
CGGAGGATATCGAGGGCGACGGTAAGTGAAATCGATACAAAACAAAGTCG
ATAGTTGATGTACGGCTCTATATCGCCTTTGCTCACCTNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTT
TACCGTCGTCGAGCAAAGTGGACGGTGATTTTGGAGACATGTCAACTTTG
CTTTATACCGTCCCCCTCGATTTATCTCGAATACATAAACTCGCTATTTT
CCTCAGTGGGGATAAGAGTTCCTATTGAAATCCCAATGGAGATAACAATT
CTATTGCTCCAATGTTAATAAATCCAGTGGAAATGATTTTGGAGTGCATT
TTTTAAACATTGAATTTTAAGGTCAATTTTCCAGTGGGCTGAAATTCTAG
GGTATTTTCCCATCGGGGACGAAATTTTTTCTAGTGGGGCTGGGGTCCCA
GCGGATCCGTGACACAGGCGTGTTATCTTGAAAACACAATTCGAAATTTC
AACAAGCTCGCCATTTCCAGACTTCTTTAGTTTAATGTCCAGTTTATACG
ACACTCTTCAATCGTCAGCGCAAGCCAGTATGACTTTTCTCTAAATCCAA
TTCCTTCGTCTACATACCAAAGAACGATAAATAGAATTTACCTCTAAAAA
AACCACCCAAGCACGTAACTCGTTTTAGCGCTCAGACAAGAATAATGACG
TTATGGACTTATGATGGATGCTGGTATATATAGGGCCTTGCCAGGTATAA
CCTTGTTTCACTGAGATCCTTTTTCCTAGTTGATAGTTAAAGGAAAACGA
AAAACTGAAAGGCGATTGCCTAAAATGTTAAATTCGATGCAAAACTCATT
GAAACTTTCGATCCCATTGGGAAAGTCACTGGTGATTTTGTAATGGATTC
CGTGATTTTGTAATGGATTTTTCGGAAGGGAGGGATTCCATCGGTTTAGT
GACCTTGGAAAAAAATGAGAGATTGCCCCGTTGGCTGTTTTTAATTTTTT
ATTTGTCATTTTACAAGAATAAACTGTTAATATCTTTTGCTTTTATTTAC
CTTTAGGGAGCTGATCTCTCGACCAAGTTAGGTGAAATTGAGGATAAACT
CGACGAAGCAGAATCACAATTAAACGAACTCACTGCCAATGTAGCAGAAA
ACGAAAAAACATCCGACGAAACAGATCAAGCAAAAAAGATTATGGAAAAC
AGAGGTCGAAATGATGCTAGCAAAATTGAAGAACTCGAACGAGAATTAGA
AACATTGAACGAAATGATCAAAGAAAATGAAGGGGAATATGAAGAGGACT
TGACATTAGGTTCGTATACAGTTTTCTATTCTCAAAATGCAAAGAAGGAG
ATTTTGGCAAAAATCTTTTGAAATTTTAACAAATATTTACTAAAGAGTGG
GGGGTGTTGAAGACATGATGCAAAATAAAATAATTTTGGGTTAATCAGAT
TGGGCCTTCTTTGAAATGTGGAAGCATTTGTGCGTCAGTCAGAAGTTTTG
GTACAGCATCTTTCACCAGCGCTCATAGATACTTCTGTTTTCTGTTTCCC
AATAATGGACTTGCCTTTTCCATAGTTATCATGAAAATTCCTTATCAAAT
CTTGTCATATTCATTTCGCTACTTCATTTTTATCTAGTAACCGAGCTTGA
AGAACAATTAGACGAAGCAGAAGAACGACACGAGTCCGCTGATGCCAAAC
TGAAAGAACTCGATTCTCAATATATATTGATCGGAAACAGTCATAAAAGT
ATGGTGACGAACGAAGATGCAGCTGCCGATCGTGTAAGCCAAGCTGATTC
AAAAATCTCTGAAATGGTTAGCCAAGTCGACGAAAAAGAAGAATTGGCAA
CCGCTATGGAAGCACAATGGAAAGAACTTGAAGACGAAATGGATAAACTT
GCGATGGAGGAAGAAGAATCAAAATTAACGTTCGAGAAAAAACAAGAAGA
ACTTCAACTGGCTCTTGCAGAAATTAACGATTTGTAAACATTTGTTTTTT
TTAGTCAACTCTAGATAATATCTTTGCATACGCTTCCCCTATTTCCTTGG
GTACTCAGCATTGAATTTTCTACAAATTCAAAGATTAGATACCCTAACTC
ATGGTGTACGCGAAACTTTACTTTTCATTTTTCCTCATTTTTATAAAAAT
AATTTTGTAAATTTTTTGATACCTTATTTTTCTCTTTTTGTATGTATTTA
TTGTATGAAAATTTAAGACTCCCGTTTTTTTTGTATTATCATTTTTGACC
GCACCTGTAAAATAGCAACTTTTTCGTTTAAACCAGACAAAGAATAGGAA
AATTCAAATATTAATATTTCTTTTCTGTCATAATCTTCAACAGACTTAGC
GCCACCGGTAGCATCGTCTTGTACGGTTAAAAAATTTTAACACCCTCTTG
AATACTTGAAATCATGCGTTGAATTCGGGCTCGTGACAAAACTTTCAGAT
TTACGGCATGTCGGTGAAGTTAATCGAGCACGCTGGGGAGACAACACAAT
TCAAAAGAGAACACAATTTGCTGTAAGAAGTGCTAGACCATGTATGAGCA
ACATCGAGGGACTCAATGTTATCATTATCTACTCCTGACATTAGACAAAC
ATTGCTCTAAGACAACTCATTTTAAAGACTTTTAGACGAAATCTCGAAAA
TGGAAAGACTAGCCTTATCTTAGACTTTCTCTTAAATATTCATCTTCCTA
TTTTCAAAGGGTTTAAAACTATGCCACAATAACTGAAGGTACTGTAACTG
TTTTTCTCAAATAGTTTATTTTCAATTACTTTCAGAGGTTTACCCTGTAC
GCAGAAGAATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000520XLOC_000520Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000880-exon-sc0000005-1575043694:1360097..1360578TCONS_00000880-exon-sc0000005-1575043694:1360097..1360578Clytia hemisphaericaexon
TCONS_00000880-exon-sc0000005-1575043694:1356370..1356622TCONS_00000880-exon-sc0000005-1575043694:1356370..1356622Clytia hemisphaericaexon
TCONS_00000880-exon-sc0000005-1575043694:1354866..1356041TCONS_00000880-exon-sc0000005-1575043694:1354866..1356041Clytia hemisphaericaexon
TCONS_00000880-exon-sc0000005-1510915933:1360097..1360578TCONS_00000880-exon-sc0000005-1510915933:1360097..1360578Clytia hemisphaericaexon
TCONS_00000880-exon-sc0000005-1510915933:1356370..1356622TCONS_00000880-exon-sc0000005-1510915933:1356370..1356622Clytia hemisphaericaexon
TCONS_00000880-exon-sc0000005-1510915933:1354866..1356041TCONS_00000880-exon-sc0000005-1510915933:1354866..1356041Clytia hemisphaericaexon
TCONS_00000880-exon-sc0000005-1491911889:1360097..1360578TCONS_00000880-exon-sc0000005-1491911889:1360097..1360578Clytia hemisphaericaexon
TCONS_00000880-exon-sc0000005-1491911889:1356370..1356622TCONS_00000880-exon-sc0000005-1491911889:1356370..1356622Clytia hemisphaericaexon
TCONS_00000880-exon-sc0000005-1491911889:1354866..1356041TCONS_00000880-exon-sc0000005-1491911889:1354866..1356041Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:1354866..1360578 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.15751	1.20463	4.77651	3.78805	21.4579	17.8149	1.9615	5.87	20.7409	15.372	0	0.174348	8.37651	12.7553	23.7231	25.461	29.5992	34.7421	12.1378	16.9864	0.613108	2.19324	36.8115	22.1271	0	0.970632
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000880 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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