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TCONS_00000880 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000880
Unique NameTCONS_00000880
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1911

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000880 ID=TCONS_00000880|Name=TCONS_00000880|organism=Clytia hemisphaerica|type=transcript|length=1911bp
aaATCAGGTTATTTCACTCATGGAAAGGATatgaaaaattgtatttttca
gTTTTCGAAACTAAAAACCAAGGAAAAATGTCGTGGTTCGTCATTTAGTA
GCTACCCCCTAACTCAATTTAAATCCAATCATGGAAAGAAGAGATCAAAC
TTGTAGAATCAAAATTGATTTAATCTCAAACCATCCCTGTATTGTCCTTT
ATTTTATACAAAACAATTCgcatttttttctcttattatAACGAACTTGA
GCAGCACATCGTCAAGTACTCGCCTCGATTGGTTATCAATTTCTCtccag
agaaaaaaattctgcaaaaacTTCTACATTTTTCATCGTAAAACTCACAC
ATCAAGATGCAAGCCGTCAAATCGAAATTAGCTTCATTGAAAGCTAAATT
GAAGGAATCCGAAGATGCAGCTAATGATGCCGAAGCTGAACTCAACGAGA
TCAAAGAAAAAACAGAAGAAATGGAAACTTTGGGAGCTGATCTCTCGACC
AAGTTAGGTGAAATTGAGGATAAACTCGACGAAGCAGAATCACAATTAAA
CGAACTCACTGCCAATGTAGCAGAAAACGAAAAAACATCCGACGAAACAG
ATCAAGCAAAAAAGATTATGGAAAACAGAGGTCGAAATGATGCTAGCAAA
ATTGAAGAACTCGAACGAGAATTAGAAACATTGAACGAAATGATCAAAGA
AAATGAAGGGGAATATGAAGAGGACTTGACATTAGTAACCGAGCTTGAAG
AACAATTAGACGAAGCAGAAGAACGACACGAGTCCGCTGATGCCAAACTG
AAAGAACTCGATTCTCAATATATATTGATCGGAAACAGTCATAAAAGTAT
GGTGACGAACGAAGATGCAGCTGCCGATCGTGTAAGCCAAGCTGATTCAA
AAATCTCTGAAATGGTTAGCCAAGTCGACGAAAAAGAAGAATTGGCAACC
GCTATGGAAGCACAATGGAAAGAACTTGAAGACGAAATGGATAAACTTGC
GATGGAGGAAGAAGAATCAAAATTAACGTTCgagaaaaaacaagaagaac
TTCAACTGGCTCTTGCAGAAATTAACGATTTGTaaacatttgtttttttt
agtcaACTCTAGATAATATCTTTGCATACGCTTCCCCTATTTCCTTGGGT
ACTCAGCATTGAATTTTCTACAAATTCAAAGATTAGATACCCTAACTCAT
GGTGTACGCGAAActttacttttcatttttcctcatttttataaaaataa
ttttgtaaattttttgataccttatttttctctttttgtatGTATTTATT
GTATGAAAATTTAAGACTCCCGTTTTTTTTGTATTATCATTTTTGACCGC
ACCTGTAAAATAGCAACTTTTTCGTTTAAACCAGACAAAGAATAGGAAAA
TTCAAatattaatatttcttttctgtCATAATCTTCAACAGACTTAGCGC
CACCGGTAGCATCGTCTTGTAcggttaaaaaattttaacacccTCTTGAA
TACTTGAAATCATGCGTTGAATTCGGGCTCGTGACAAAACTTTCAGATTT
ACGGCATGTCGGTGAAGTTAATCGAGCACGCTGGGGAGACAACACAATTC
AAAAGAGAACACAATTTGCTGTAAGAAGTGCTAGACCATGTATGAGCAAC
ATCGAGGGACTCAATGTTATCATTATCTACTCCTGACATTAGACAAACAT
TGCTCTAAGACAACTCATTTTAAAGACTTTTAGACGAAATCTCGAAAATG
GAAAGACTAGCCTTATCTTAGACTTTCTCTTAAATATTCATCTTCCTATT
TTCAAAGGGTTTAAAACTATGCCACAATAACTGAAGGTACTGTAACTGTT
TTTCTCAAATAGTTTATTTTCAATTACTTTCAGAGGTTTACCCTGTACGC
AGAAGAATTAT
Run BLAST on NCBI

transcript from alignment at sc0000005:1354866..1360578-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000880 ID=TCONS_00000880|Name=TCONS_00000880|organism=Clytia hemisphaerica|type=transcript|length=5713bp|location=Sequence derived from alignment at sc0000005:1354866..1360578- (Clytia hemisphaerica)
AAATCAGGTTATTTCACTCATGGAAAGGATATGAAAAATTGTATTTTTCA GTTTTCGAAACTAAAAACCAAGGAAAAATGTCGTGGTTCGTCATTTAGTA GCTACCCCCTAACTCAATTTAAATCCAATCATGGAAAGAAGAGATCAAAC TTGTAGAATCAAAATTGATTTAATCTCAAACCATCCCTGTATTGTCCTTT ATTTTATACAAAACAATTCGCATTTTTTTCTCTTATTATAACGAACTTGA GCAGCACATCGTCAAGTACTCGCCTCGATTGGTTATCAATTTCTCTCCAG AGAAAAAAATTCTGCAAAAACTTCTACATTTTTCATCGTAAAACTCACAC ATCAAGATGCAAGCCGTCAAATCGAAATTAGCTTCATTGAAAGCTAAATT GAAGGAATCCGAAGATGCAGCTAATGATGCCGAAGCTGAACTCAACGAGA TCAAAGAAAAAACAGAAGAAATGGAAACTTTGGTAAGAAATTTCGTTTCA TCTTTTGAAAATTTATTTATTCAAACGAATATTTTTTGAGTCTGCAAATT AAATAGATTTATTTAAATTAACTTCATAGCCGCGCTAGAGGACGTTAGTG ATTTAAAAAGCCCTTGCTCGATTCCATTATTATTGACCACTGTCATTTTC ACTCTCTCTCTGAATATATAAGATTCAAAATATCAGATCACAACGCTTGT GGGTGGTGTGAATGCACCTTTATGTCCCTTCCCAGTCGAAAATCTGAAAT ATATCAGTCAGGGGTACGCACAGTGCAAGCCACAGGACAAATCAGAGTGC AGATTTAGAGACAGGGGTGTTTGTTTAGTTGTTTCCTTCAAATGCATAAC ACACATCTTTTGTCCTTTTGTAAAGAAATTCATCTGAATTGAAGTCATTA CTGAAGGCCCTTACAGGAATGCGATGCCTAATAACAAATATGACATATAA GATTTTTTTACTTATTACTCCCAAAGCTATTAATAATGGTAAAATTGTGA TATTTATCCTTATCTTTTCTGGTCAGAAGTCAGAATGAGGCAACGAAACG TAATTATTAGAATCTTTTGAGGTAAACCATACCACAGACATGCTATTGCA TAAAATAACTAAAACTTTGCTGTTTTGTAAACCCTTTGTAACATTATTAC AAAAATCGTTTAGCTTAATATATAGACGAAAAGATTACGAAGACAATATA AATTGCCTTAAAATATAATTTTTCTATGTTGAAGGTATTCAGAAAACAGA CTTAATTTTAACGTATGTGTTCTCCTAAGTCTTCTAAACAGCATTTTTCT TTTTTGCATAATTAGCTTTAATTGAAGAGATGAAGCTCTTGTATAAAATA TAATTAATGTTGAAGGTATTCACTTGTTCATTGCTAAGAGAAACAGACTT TCTTAACATATGTGTTCTCCTAAGTCTTCTAGCAGCATATTTTTCCTTTT TTGCATAATTAGCTTTAATTGAAGGGATAATGCATTTACTGTCGCTTAAA TTTAATTAGCTCTAATGATTTTGGTTTAAAGATGCCAATTATCGATTATA AATGACAATTCTTTGTGTTGTAATACCTTTGCTATTATCATTTTTTCTTT ACTAACTTATTTTTCCTAAATATGGTTGGAAATAAGGGGGTCATCCTCAG ATTATCAATAATAGGGTTTAACTCACTAACATTTACGATCTCAAATTTTT AGACAATTTTTTATACGGTAGTAAAATATATTATGATACATACAAGAGAT TATACAAAACAAAGGAAATATTGACTATGAAAAATCATCATATTTGACAA GCTGAATTAAATCATTATGTCTCCTCATGATGCTAATCCATTTTCTCTCC TCCGCTGGGGTTTGGGACAATAGCCAGATTACTATACTTGACAAAATATT TCAAGTGCGATGGAGAGTGCTAAATACAGTATATGATAGTAAAATCGGTT TAAAATCTTTATAAATGACAGAAATATAATAACCGTGTCCGTCATACTAA GCTATTATGAAAAAAGAGTCAACGATTAAATAAAAGAGTAGTGGAGCCCT ATATAACACAAAATGTAAGGAATTTAAAGCTTTTCTACTGTGCTTTAAAA AAATACGAATTAGATTGATTAAGACTAAAAGATAATGTGAAATCTCTCAT CTGTATTATGTAAACTAGCAGGTGCCATCACGAGGTAAATCTTTTTGTCA CAGTAAATTATTGAGATCATAGATATACCTTGATTAAATTGTCTGCATGT CGAATCCAAAGAGATAATACTAAAACGAAATCATGAACCTTGAAAATTTT ACACGCTTTTTTTATAAGAATATACTTTGATATATGATGAAAATGGCCAA AAAATTAAGAGTATGCTAAGAATATCACCATCATGGAATCAGGCAACAAA CCCTAAAAATGTCACTTCAAGAACAATTTTTTTAACTTTTGAATTACCAA TTATTCCAAAGTAAGGTTTAATACTTTCACAAAAATGCCATTTTTATGCT TCAGATGTTTATTTCTTGTTAAATTTAGTTTGAATTTCGATTCTAACATA AGAATACCGTACGAATATTTTAGGATGATTTTTCCCAAAAAGTTAAGAAT CCAGGATGAAATGAAAAGCACCATTCTTATAAAAAAAGCGTGCAATGGAG ACTTATTTGGGGTTGAGTCCTATTTCGTATGTTATTGCCCAGGCTTGGTT TTTAACCATGGTCGTACCTATGTGGATATTTTAGTGGCAAACAGTTTATC TTACACCCCTGTCTCACAGCCGCGGTGGAACTTTTACCGAGTTTATGTAT CGGAGGATATCGAGGGCGACGGTAAGTGAAATCGATACAAAACAAAGTCG ATAGTTGATGTACGGCTCTATATCGCCTTTGCTCACCTNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTT TACCGTCGTCGAGCAAAGTGGACGGTGATTTTGGAGACATGTCAACTTTG CTTTATACCGTCCCCCTCGATTTATCTCGAATACATAAACTCGCTATTTT CCTCAGTGGGGATAAGAGTTCCTATTGAAATCCCAATGGAGATAACAATT CTATTGCTCCAATGTTAATAAATCCAGTGGAAATGATTTTGGAGTGCATT TTTTAAACATTGAATTTTAAGGTCAATTTTCCAGTGGGCTGAAATTCTAG GGTATTTTCCCATCGGGGACGAAATTTTTTCTAGTGGGGCTGGGGTCCCA GCGGATCCGTGACACAGGCGTGTTATCTTGAAAACACAATTCGAAATTTC AACAAGCTCGCCATTTCCAGACTTCTTTAGTTTAATGTCCAGTTTATACG ACACTCTTCAATCGTCAGCGCAAGCCAGTATGACTTTTCTCTAAATCCAA TTCCTTCGTCTACATACCAAAGAACGATAAATAGAATTTACCTCTAAAAA AACCACCCAAGCACGTAACTCGTTTTAGCGCTCAGACAAGAATAATGACG TTATGGACTTATGATGGATGCTGGTATATATAGGGCCTTGCCAGGTATAA CCTTGTTTCACTGAGATCCTTTTTCCTAGTTGATAGTTAAAGGAAAACGA AAAACTGAAAGGCGATTGCCTAAAATGTTAAATTCGATGCAAAACTCATT GAAACTTTCGATCCCATTGGGAAAGTCACTGGTGATTTTGTAATGGATTC CGTGATTTTGTAATGGATTTTTCGGAAGGGAGGGATTCCATCGGTTTAGT GACCTTGGAAAAAAATGAGAGATTGCCCCGTTGGCTGTTTTTAATTTTTT ATTTGTCATTTTACAAGAATAAACTGTTAATATCTTTTGCTTTTATTTAC CTTTAGGGAGCTGATCTCTCGACCAAGTTAGGTGAAATTGAGGATAAACT CGACGAAGCAGAATCACAATTAAACGAACTCACTGCCAATGTAGCAGAAA ACGAAAAAACATCCGACGAAACAGATCAAGCAAAAAAGATTATGGAAAAC AGAGGTCGAAATGATGCTAGCAAAATTGAAGAACTCGAACGAGAATTAGA AACATTGAACGAAATGATCAAAGAAAATGAAGGGGAATATGAAGAGGACT TGACATTAGGTTCGTATACAGTTTTCTATTCTCAAAATGCAAAGAAGGAG ATTTTGGCAAAAATCTTTTGAAATTTTAACAAATATTTACTAAAGAGTGG GGGGTGTTGAAGACATGATGCAAAATAAAATAATTTTGGGTTAATCAGAT TGGGCCTTCTTTGAAATGTGGAAGCATTTGTGCGTCAGTCAGAAGTTTTG GTACAGCATCTTTCACCAGCGCTCATAGATACTTCTGTTTTCTGTTTCCC AATAATGGACTTGCCTTTTCCATAGTTATCATGAAAATTCCTTATCAAAT CTTGTCATATTCATTTCGCTACTTCATTTTTATCTAGTAACCGAGCTTGA AGAACAATTAGACGAAGCAGAAGAACGACACGAGTCCGCTGATGCCAAAC TGAAAGAACTCGATTCTCAATATATATTGATCGGAAACAGTCATAAAAGT ATGGTGACGAACGAAGATGCAGCTGCCGATCGTGTAAGCCAAGCTGATTC AAAAATCTCTGAAATGGTTAGCCAAGTCGACGAAAAAGAAGAATTGGCAA CCGCTATGGAAGCACAATGGAAAGAACTTGAAGACGAAATGGATAAACTT GCGATGGAGGAAGAAGAATCAAAATTAACGTTCGAGAAAAAACAAGAAGA ACTTCAACTGGCTCTTGCAGAAATTAACGATTTGTAAACATTTGTTTTTT TTAGTCAACTCTAGATAATATCTTTGCATACGCTTCCCCTATTTCCTTGG GTACTCAGCATTGAATTTTCTACAAATTCAAAGATTAGATACCCTAACTC ATGGTGTACGCGAAACTTTACTTTTCATTTTTCCTCATTTTTATAAAAAT AATTTTGTAAATTTTTTGATACCTTATTTTTCTCTTTTTGTATGTATTTA TTGTATGAAAATTTAAGACTCCCGTTTTTTTTGTATTATCATTTTTGACC GCACCTGTAAAATAGCAACTTTTTCGTTTAAACCAGACAAAGAATAGGAA AATTCAAATATTAATATTTCTTTTCTGTCATAATCTTCAACAGACTTAGC GCCACCGGTAGCATCGTCTTGTACGGTTAAAAAATTTTAACACCCTCTTG AATACTTGAAATCATGCGTTGAATTCGGGCTCGTGACAAAACTTTCAGAT TTACGGCATGTCGGTGAAGTTAATCGAGCACGCTGGGGAGACAACACAAT TCAAAAGAGAACACAATTTGCTGTAAGAAGTGCTAGACCATGTATGAGCA ACATCGAGGGACTCAATGTTATCATTATCTACTCCTGACATTAGACAAAC ATTGCTCTAAGACAACTCATTTTAAAGACTTTTAGACGAAATCTCGAAAA TGGAAAGACTAGCCTTATCTTAGACTTTCTCTTAAATATTCATCTTCCTA TTTTCAAAGGGTTTAAAACTATGCCACAATAACTGAAGGTACTGTAACTG TTTTTCTCAAATAGTTTATTTTCAATTACTTTCAGAGGTTTACCCTGTAC GCAGAAGAATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000520XLOC_000520Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000880-exon-sc0000005-1575043694:1360097..1360578TCONS_00000880-exon-sc0000005-1575043694:1360097..1360578Clytia hemisphaericaexon
TCONS_00000880-exon-sc0000005-1575043694:1356370..1356622TCONS_00000880-exon-sc0000005-1575043694:1356370..1356622Clytia hemisphaericaexon
TCONS_00000880-exon-sc0000005-1575043694:1354866..1356041TCONS_00000880-exon-sc0000005-1575043694:1354866..1356041Clytia hemisphaericaexon
TCONS_00000880-exon-sc0000005-1510915933:1360097..1360578TCONS_00000880-exon-sc0000005-1510915933:1360097..1360578Clytia hemisphaericaexon
TCONS_00000880-exon-sc0000005-1510915933:1356370..1356622TCONS_00000880-exon-sc0000005-1510915933:1356370..1356622Clytia hemisphaericaexon
TCONS_00000880-exon-sc0000005-1510915933:1354866..1356041TCONS_00000880-exon-sc0000005-1510915933:1354866..1356041Clytia hemisphaericaexon
TCONS_00000880-exon-sc0000005-1491911889:1360097..1360578TCONS_00000880-exon-sc0000005-1491911889:1360097..1360578Clytia hemisphaericaexon
TCONS_00000880-exon-sc0000005-1491911889:1356370..1356622TCONS_00000880-exon-sc0000005-1491911889:1356370..1356622Clytia hemisphaericaexon
TCONS_00000880-exon-sc0000005-1491911889:1354866..1356041TCONS_00000880-exon-sc0000005-1491911889:1354866..1356041Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:1354866..1360578 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 1.15751 1.20463 4.77651 3.78805 21.4579 17.8149 1.9615 5.87 20.7409 15.372 0 0.174348 8.37651 12.7553 23.7231 25.461 29.5992 34.7421 12.1378 16.9864 0.613108 2.19324 36.8115 22.1271 0 0.970632
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000880 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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