XLOC_000307 (gene) - C. hemisphaerica

Overview
NameXLOC_000307
Unique NameXLOC_000307
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000002:1534920..1544240+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_000307 ID=XLOC_000307|Name=XLOC_000307|organism=Clytia hemisphaerica|type=gene|length=9321bp|location=Sequence derived from alignment at sc0000002:1534920..1544240+ (Clytia hemisphaerica)
ATCATTTGTTCTCAAAACTGTATACAAAAACTGGTAACATTAAATATTGT
TCACAAACTTTAAcacctttaaaattttgttaaagtTTTCAAGTTTAACC
AATTTCAATTTAGTTTTGTTTTAACTGTTAGCCAACTTAGAGCTAGTTAA
CTGTTGGCTAGGTTTAACTGAAAAACAACTGAAAGAACCTGGTTAATTAA
AGTAACATTATAATTCAGACTCAGATTTGATTGTTACTTTACGATTCAAA
TTCTTGGATGATTGAAAACATGGCAACCGCCTTGCAGCAAACGGAGGTGT
TCGATGCTAACAAAAACAATAATATTGAAATTGGTAAGCATGCTACATta
ctgtacagggtgtccctaattaaagtatcgagtttgaacatgcgattgag
tagaaaagtttgtgtgtgttatcgctaaaatataagaacgttctcacagg
cttattacaaaaggtagttacaacgtataaattaatcgtaatgacaaaga
aaaaagagggagagcttaaaatacaattttgtgaacacgcacatagaact
ttctactcatagttgtgtttcgactcgatactttaattagggacaccctg
tattatatcatgaacatataaacaacTGGACATCCattctttttgtagaa
aaggctgctagcttcgttgccgcctcgttaaaagcataaaatgaaacaat
cgattttgatgatataccacttgggaataccttgctaacaacgtcaaaac
ttcgacaaaagtctctgttgttctactcttctcaagtcgttTATCTATAT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNgttcaagctctatcaatccttttacct
aaataattcaaagaaataaaattatgacggagtattgtcggatttttcat
accaattttgaaatacaggcggtaacgaagctcgcttcaaagagacaata
aaagatagacgtccagccgtttatatgttcatgattatATATATCTTCTT
TAGCAAATCCTAGTTGCTGAGAAGACCCAAAAGAACCATTAGAAAATCTT
TGTTGAGGCTTGGCTGTTCTTACTGTTTTAAGTGAAGGTGAAGTGAAGGT
ATTTAGAAATTATTATCGCTTTTACAGAACCTtcaatttgttcaaaaatt
gaatcACCGTCCTCAAAGACTCTTACTTTCACTTAAGTTGTTCTTTGTAT
TGCTTGCCAATTTTGCCATATTATTCCAATGAAATTATTCTTTTATCGAA
AATATCCGAGATTTTATATTTACATGGTGCTTTAGACTAAAGAAATATCT
AagacatccccttctcacagacccactgggatccCTTACCACTTAAaata
ttggccaaaatatcgtctccagtggaaaattatactttaaTTTTAGTCCC
CGCttaaaataatcagataagctaAACTTCACTGCAGAATATTGTGCGAT
TTCTTTCATTTCCACTGAATcttctggctcgaaaacaatggaattcaaat
ccccagccataagaaaagatgagaatatcaatcctcATCGAGGTTCAGTC
CGGTATTTTACCCCGACTGGCTGAGAAAGTCTttccgggtctgtgagaaa
ggggcgTTCTAAGATTTcctaaaagttaagaatatacgatgaaatggaaa
aacaacattcttatgaaaaatataGATTCTTTGTCAGGCATTTTTCAGCA
CTTTCAgcctaaaatcattttttcatcatattctcatttttcaaccattt
cagggtgggtgggaaatttttggGTTGTATTCTGAATGAAGCACAACTGG
AATATGGTTAAGACGTTTTACAGTCATTTGTCACTTCTGACATTGGGGAT
AATTTTGGTCCTGACATTATTTTGTGATCGCTTTTGATTTGATTAAGCAT
AAATGAGTTTTCGCGTCGCggacatttttttttctctattcATGTTGCCT
ATGTTTCATTTTCGAGGCTTAAATTTTTAAAAGGCGCGGTTTGCTTGCGT
AAAAAATTGTAACATACTCATTGAGTATAAATTCATTTATTGTTTCGGTC
ATTGGTTAAACATAAAACCGCGCGCTATTTTTGAGCATTGttaaaattct
ttttatttttttattttttttattttttgcaaagaaaatgttttttgagc
TACCTTTCTGTTTTGTTTCTAATGTTTAGAAAACCAGTTCAAAAAGcgtt
ttgaaacatttttacaaactttcatgTTTTGACTggtattcaaaatttca
aacgaaTTCCAACCAAAACCTTTTTTGCTGAAGACGCagttaaaaatatt
gacaaaaattgataCCCTTTATATgacttgattaaaaaaataaaaaaact
tgtaattttTGCAGAGAATTAGTGCgcgcatttttctttttaaagccctc
tttgttttgatattcgGCATAACTTTTAACAAAAGGCTCACCCCGCgcgt
tttttctttcttgtgttctattttatttcaaaaatttaaagggACCCCAT
GACAATATAGACGCAGTGTGGTGTGTAACTTTAGCTTTGACGCGATGAAc
cgtttttaatgaaatttaaaacacTACGTGATACCTCTTAACGTTTCACG
CTCAGGTTGTAAAATTCGAGCTGAATTAGACTGTTGCAAAGTTATCCAAT
TATATTATTTGTCTATCGTGACAGTTTGTTTCTAAATACTGTAAGGTGGA
TCAGAGCCTCGGACTCGGTTTCTAAACAACAGAGCACTTTCTCTAATAtc
aacccccgggggggggcactcaaggtaaataacctaccagacgttcggcc
cttaagggtaggtttttcaaagttcagctagtgcactgtaagggtaggaa
attacaaaactgcactgaactgcactgtaagggtaggaaattgtgataaa
aggccaattttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNgaacaattgcgcggaacaatagaattcaaaagaatactg
caagcaattacaaatgccaggctggtctaaacgcagccactaGCAGCTTT
CAAAagctttgaaaatctttgtAGAGCTTCGAAACCTCCTAACgcgtttt
tctataagaactaACTATAAAAGAACATGCGGCTAGTTTTTACTGTTTTA
TTCAAGGTTTTTTTACGTTAATAACCAATTTTGCaagattttcatcattt
tgatgTGAGCAAagaaaattgcgtgattgcgtgttGGCAAGATGGGGGTT
TATTGCTGGGCTGGGGAGACCATTGCTGATTTAGTTGATTTTTCTTGAAG
AGAGGTCAATCTTTTCCTCCTCCCTTGAAATGAAGAGATCAGATCTTTGA
GatatttttacgaattttcGGGCTGGTTATTCTTGGTTGTTTAAACCAGT
TCAGCTCTGTTTGAAGACAGGTTTTATCTTAGTTTTGTACTCGCAAACGA
AACACTCGAAACAGATTTTTTTTGACGGAACAGAACAGAATATAATAACT
CACTTTCGTTTAACGAACTTTTTCCAACGAAGTTTAAAATTCTATCTTTG
GTAGAGATAAAAAAAGTTTGGtcaatccaaacataaattgtagTAGATTG
TAGCCGCtagaaagtttttttcataggtaaaatttttcttctttccctTT
AAAGAATATTACATACAGAATAATTTTTCCGCTTACAGCTTAAATTAGCG
CGCTCTTTGAAGTTATTGTTCATAAGGCGCTATTTTtgagaatgattttt
tctagCTCATTGATTTTACTGCTTATTCAAGCGAAATTATCGCGCGCGCC
ACGAAAAGTTGTTTTTCTAAAGTCGCAAAAGATAAGAGACATGGCTTTAG
AAACTCTTTAAGCTAACCTATAAACCCTCTTTTCTATGCTTGCAACGCCC
CTACCACACAATCCAGCTGCATAAAATGTATACAAAGTTGACTGTTTTGA
ACAATTTGCTTTGGTCATAATAATGATATAATTATATCAAATTACTACAT
CAATAGGCCATAATTATGTACAATTTAAGCTCTTAAATTAGAAGTCAAGC
AACTTGGTAAATTTCCCAAGCAGGACGTACAAGCAAAACAAGGAGCCTgg
attttgcaaattttctttctttctttttcaaatgagAGGCTGTACTCACA
CTTTGAGCACACTGAGTGCATCAACCGTGATAAGAGTCGCACGCGCGCCT
ATGTCGCACGCTCTCGTAAACATGAACAATAGAATGGAACTTTAGCCAct
attgtttcttttgttttcattgttcTCATTTgttaaacaataaaaaagaa
gaaagttttccaaactgaaaaaaaaattagaacattTGTAATCTAACTTG
AACTCAGACGTGTTTACGGGTCAGCCAACCAGaaaaggtttttgaaaaca
acCATGCATACGTTTGCTGGATCTTTGAACCAAGCAATGTTTTTGCAAGA
AGCTACTGTTCCAGACTGTTTGAAAGGTACTATTACTAGATTCATTGTGT
TTTGATAATTTGTGAACTGATTTGCatggttttaaagttttcatattttt
gttcTCTGGTTTCGGCTTTGGTTTATTCTTTGGTTTCAAccaagccttgt
gttcttataaaaaagcatgtttaATCTGATTTGCTTGACCTGATTTTTGC
TTGACTGCTTCgtccttcttttttttttttgaaacaccgGTGTCACAGGA
AAAAAGTACTCCCCGAAAAAAGTACTCCCCAGTACTCCTGGGAGTACATT
CTTCCCAGGAAATTGCCACCCCCTCCAGGAAAAAAGTACTCCCCATAGAT
ACTATGCTGGGAAGTCAATTTTCCATAAAAGTTATTTTGAACTATTAACC
GACCCATCAACTTTGAATTTAAGCGAAGTTTCAGATTTATGGTcgagaaa
aaattgaatacttaCTAAGTCAGGTAAAAATTTAGTTTGAGAAGAAAATT
TGGCTGCTCGGAGACCCTTTATCCAAGTTTGGACTAACTTGTTTAGCTCT
AAAACAAGCCTCTAATTTTGCgtttcaaatattatttttctaaatagggt
gtaaatattctgaaaaaaatcctGCAAAAAAAGTAGATATTTTACTTGGA
TAGCCCAAATGTAGGACTACTTTTAGACAGTATTTCGATTGTTTATACAc
ggtcaaaatttcattcaaacaaAATAAGTGCTTCTTTCAATAAGGATGTG
CAGTTTTTCTTTGAGTTAAGGTACTTTcaacaatttggaagcgctcttaA
GCACTTAAGATCTAAAATGTTCAAGAATAGTCCAATAAggtcccaaattg
aaatattcgattacatttaacaaaacttaaaagcgactttctcgccaaaa
caagaaataaccaaaattctcaatatattttgacacAAATTAGGGGAGTA
CAAATTTCCCAGAGGGGTTAAGAATTTCCTGGGAAAAAAGTACCGGGGAG
TATCTATTTCCTGGGAGTACTTGTTTTCTGTTACACCGGTTTTAGATAAT
CTTTGTATCTTGGTTGCATCTgcacattttgttttttataagaacatttt
aaaatattcttattttcaccattttgtgagaatgtttttcaccattttct
aaTAAATAGTGTGTTTCAGAgtaaagccttaaaacgttCTTTTGGTCAtc
aaaaccttatgttcttataaaacgtgAATACATTTCTGAATGTCTTCCTT
CTTGGACTGGAGTCTTCTTATCTTTTGACTTTCGTGTATTTATGGACAAC
GCTCCTTTACAGAGCAAGGATACATCAAAAGATTTTACctcattggaaag
ataattcAACGTGGATTTctttagaaattatttttaacttAAAGAAAAAC
ACCATACTGCTAGGATAGGATTTAGAATGTACTCAAAATTACGAATTTAA
ACGATAAAACTACATAGTGGCGAACAATTGGTCTACTTAGGCGgttcttt
aaaaagtttttgcgGGGTCTTTACTTCTCCCTTAATAAATCCGTTTTAAG
AATCTTAAAGTTTATCATTATATTCAAGTTCACTTCAACCATTTTCCATT
CAGCATCACGTCCAAAGCCATAAAATCctaatatttaatttttcgaattt
tcaatTTACAGAAACTGCCAACAAATTGGTGGAGATGTATGAAAAACAAG
TGCAACAAGCAGCTCAGAACATCAAAACCGAACAAGTCGTTGCTAACAGT
ATCGCCAACACTCTTCTACAACAACCACAAACTCTCTCTCAACAAACCAC
AACTAACAACCTGATTCAACAACAGCAACCTATCGTGCAACAAAATCCTC
AACAAATTCAACCAATGGACACCACAACAAACACAACAGAAACAGAtaca
acaaacaacaaagacaacTCAACAGAAAACATTGATGTCACTTCAGTGTC
AGTCGCTAACAATGTCGCACACCAACAACATCAGCAGCAACTTCAACAAC
AGTTGCCACAACAATTACAACACCATCAACCACCacaacaaaacaattta
aaCATAGTTCTTAATGGTGACCAAAACCAACTGAAACCATCACCGGAAAA
TGTGGATCCAAACGCTCAACAAATGGGAGTCTACAACCGTGAGATCCCAC
CACCAAACAGCATCTATGGTATCGAGAGCCTCACCAGTAAGCCATACGAC
GCTGAAGCCTCCAGACAACTCACCGATGTGATGCAGTCACCACGATTCCA
AAACGGCTACAACACCATCGCGTCCCCTCATCACTCCTCCCCAGACCGCA
ACAACCACCGCATGGATCAGACCGGCAACTGGCTATCACCAGGCAAGAGT
CTACCATTCAGAGGCCTGTGTCCACCTACATCTCCCTACGTTGACAACCG
TGACAGCATGGTACAAGCAGCTGCTCATGCTGCTGCAGCAGGCACCCAAG
CAGCCAGACGATTCATGCCTCCATTCTACGGTGGCACCAATCGGAATTTC
ACCCACCCTACAACCAATGGTACCGCAGACCGCAACCGATACGGCAACTA
CCCTGTTGGCAGCCCTATGATGTCCACCCTAGGCTACCCAAGAGACACCA
CCATGGATAACCGATACAATCTTCACATACCACCAGCTCTTAACGGGTTC
GGAGAAGAAGACAAATTCAAGTTATCCCCACCAAGTCTTGAAGACAAACA
CATCTGGACCAAACAAGAGGTGGAGCTTCTCTTAGATCTCTACGAAGAAC
ACAAATCGAAACTCCAAGACCCACGTGTACGAAAAACCAAAGTTTGGGAC
GACATTGCTAAACATATCCACGAGAAACTGGAAGCAGATGTCAATGGGTG
TCAATGTAACCAAAAATTTCGTAATATGAAAGCTGATTACCAAAAAGTCG
TAGAGCACAACGCAAGAGCTGGATCATTCAGAAAAACATGCAAGTACTAC
GACCGGTTAGAAAAACTCTTAACACCAGTTAGTGAAACCGATAAATTACG
GTGCGACGAAAACGGAATGAACAATACCGGTTTCGCAAACGGATTCGGAT
CTAAAGCTGGTACACCAAACGGCAACGGATTTTATGACAGTTCACGAAGT
ACGACGTCctccgaatgtgatgataaagCAAGTCGTGGTACGCCCTCTTC
GCCCGAGAAGCGCACAATTGATCAAGTTGAAACTACTGGCGATGATTCCT
CGCCTCCGCCCGCTAAACGCCCTTGTAATGATTGTTCTGGATCTGTCAGT
AAGAAAGACTTGGTAGAtgttttgaaagactttttaAGAGAACAACGTAA
GCGAGATGAAGAGAACTTTGCAAAATTACAGCAACTTCATAAAGAGAAAT
TGGACGCTGTGGTCAAGTTTCTGGATATGTTTCAAGAACTAGTAAAGAAA
GTGTAATGTAATTTAAATTGATTTCTCTAGTGTAACCTATTTTACCACGT
TAACATTTTCTTAACTTCTTAACTTATACCATAACAGATTTCGCTGCAAT
ACTCAAACTTAACTGTGGCTTTGAAAAATGCTAGCTTttagaattcattt
ttttttttgtatcttcaattttattttatctagTTTGAACTAAAATACCT
AAAGTGCTAAGTAATTAAATCACtaaattttgtttatatctGAATCTAAT
TTTTATCACGTTTAAAGCTCTTGTAAATATTTTGTCAATTTAATAAATTT
CTGTGTTTTAATTTATTCATGATTTATTTATTGCCTAAgttattatttat
taatttattatgATTTATGAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00000489TCONS_00000489Clytia hemisphaericatranscript
TCONS_00000490TCONS_00000490Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00000489-proteinTCONS_00000489-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1534920..1544240 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.02	36.95	31.39	16.75	17.29	10.71	3.79	17.59	17.97	16.81	11.41	13.79	43.9	20.64	13.51	0.06	0.21	9.77	9.13	4.8	5.72	6.6	11.42	1.12	0.48	0.58	0.61