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TCONS_00000489 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000489
Unique NameTCONS_00000489
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2443

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000489 ID=TCONS_00000489|Name=TCONS_00000489|organism=Clytia hemisphaerica|type=transcript|length=2443bp
ATCATTTGTTCTCAAAACTGTATACAAAAACTGGTAACATTAAATATTGT
TCACAAACTTTAAcacctttaaaattttgttaaagtTTTCAAGTTTAACC
AATTTCAATTTAGTTTTGTTTTAACTGTTAGCCAACTTAGAGCTAGTTAA
CTGTTGGCTAGGTTTAACTGAAAAACAACTGAAAGAACCTGGTTAATTAA
AGTAACATTATAATTCAGACTCAGATTTGATTGTTACTTTACGATTCAAA
TTCTTGGATGATTGAAAACATGGCAACCGCCTTGCAGCAAACGGAGGTGT
TCGATGCTAACAAAAACAATAATATTGAAATTGAAACTGCCAACAAATTG
GTGGAGATGTATGAAAAACAAGTGCAACAAGCAGCTCAGAACATCAAAAC
CGAACAAGTCGTTGCTAACAGTATCGCCAACACTCTTCTACAACAACCAC
AAACTCTCTCTCAACAAACCACAACTAACAACCTGATTCAACAACAGCAA
CCTATCGTGCAACAAAATCCTCAACAAATTCAACCAATGGACACCACAAC
AAACACAACAGAAACAGAtacaacaaacaacaaagacaacTCAACAGAAA
ACATTGATGTCACTTCAGTGTCAGTCGCTAACAATGTCGCACACCAACAA
CATCAGCAGCAACTTCAACAACAGTTGCCACAACAATTACAACACCATCA
ACCACCacaacaaaacaatttaaaCATAGTTCTTAATGGTGACCAAAACC
AACTGAAACCATCACCGGAAAATGTGGATCCAAACGCTCAACAAATGGGA
GTCTACAACCGTGAGATCCCACCACCAAACAGCATCTATGGTATCGAGAG
CCTCACCAGTAAGCCATACGACGCTGAAGCCTCCAGACAACTCACCGATG
TGATGCAGTCACCACGATTCCAAAACGGCTACAACACCATCGCGTCCCCT
CATCACTCCTCCCCAGACCGCAACAACCACCGCATGGATCAGACCGGCAA
CTGGCTATCACCAGGCAAGAGTCTACCATTCAGAGGCCTGTGTCCACCTA
CATCTCCCTACGTTGACAACCGTGACAGCATGGTACAAGCAGCTGCTCAT
GCTGCTGCAGCAGGCACCCAAGCAGCCAGACGATTCATGCCTCCATTCTA
CGGTGGCACCAATCGGAATTTCACCCACCCTACAACCAATGGTACCGCAG
ACCGCAACCGATACGGCAACTACCCTGTTGGCAGCCCTATGATGTCCACC
CTAGGCTACCCAAGAGACACCACCATGGATAACCGATACAATCTTCACAT
ACCACCAGCTCTTAACGGGTTCGGAGAAGAAGACAAATTCAAGTTATCCC
CACCAAGTCTTGAAGACAAACACATCTGGACCAAACAAGAGGTGGAGCTT
CTCTTAGATCTCTACGAAGAACACAAATCGAAACTCCAAGACCCACGTGT
ACGAAAAACCAAAGTTTGGGACGACATTGCTAAACATATCCACGAGAAAC
TGGAAGCAGATGTCAATGGGTGTCAATGTAACCAAAAATTTCGTAATATG
AAAGCTGATTACCAAAAAGTCGTAGAGCACAACGCAAGAGCTGGATCATT
CAGAAAAACATGCAAGTACTACGACCGGTTAGAAAAACTCTTAACACCAG
TTAGTGAAACCGATAAATTACGGTGCGACGAAAACGGAATGAACAATACC
GGTTTCGCAAACGGATTCGGATCTAAAGCTGGTACACCAAACGGCAACGG
ATTTTATGACAGTTCACGAAGTACGACGTCctccgaatgtgatgataaag
CAAGTCGTGGTACGCCCTCTTCGCCCGAGAAGCGCACAATTGATCAAGTT
GAAACTACTGGCGATGATTCCTCGCCTCCGCCCGCTAAACGCCCTTGTAA
TGATTGTTCTGGATCTGTCAGTAAGAAAGACTTGGTAGAtgttttgaaag
actttttaAGAGAACAACGTAAGCGAGATGAAGAGAACTTTGCAAAATTA
CAGCAACTTCATAAAGAGAAATTGGACGCTGTGGTCAAGTTTCTGGATAT
GTTTCAAGAACTAGTAAAGAAAGTGTAATGTAATTTAAATTGATTTCTCT
AGTGTAACCTATTTTACCACGTTAACATTTTCTTAACTTCTTAACTTATA
CCATAACAGATTTCGCTGCAATACTCAAACTTAACTGTGGCTTTGAAAAA
TGCTAGCTTttagaattcatttttttttttgtatcttcaattttatttta
tctagTTTGAACTAAAATACCTAAAGTGCTAAGTAATTAAATCACtaaat
tttgtttatatctGAATCTAATTTTTATCACGTTTAAAGCTCTTGTAAAT
ATTTTGTCAATTTAATAAATTTCTGTGTTTTAATTTATTCATGATTTATT
TATTGCCTAAgttattatttattaatttattatgATTTATGAA
Run BLAST on NCBI

protein sequence of TCONS_00000489-protein

>TCONS_00000489-protein ID=TCONS_00000489-protein|Name=TCONS_00000489-protein|organism=Clytia hemisphaerica|type=polypeptide|length=606bp
MIENMATALQQTEVFDANKNNNIEIETANKLVEMYEKQVQQAAQNIKTEQ
VVANSIANTLLQQPQTLSQQTTTNNLIQQQQPIVQQNPQQIQPMDTTTNT
TETDTTNNKDNSTENIDVTSVSVANNVAHQQHQQQLQQQLPQQLQHHQPP
QQNNLNIVLNGDQNQLKPSPENVDPNAQQMGVYNREIPPPNSIYGIESLT
SKPYDAEASRQLTDVMQSPRFQNGYNTIASPHHSSPDRNNHRMDQTGNWL
SPGKSLPFRGLCPPTSPYVDNRDSMVQAAAHAAAAGTQAARRFMPPFYGG
TNRNFTHPTTNGTADRNRYGNYPVGSPMMSTLGYPRDTTMDNRYNLHIPP
ALNGFGEEDKFKLSPPSLEDKHIWTKQEVELLLDLYEEHKSKLQDPRVRK
TKVWDDIAKHIHEKLEADVNGCQCNQKFRNMKADYQKVVEHNARAGSFRK
TCKYYDRLEKLLTPVSETDKLRCDENGMNNTGFANGFGSKAGTPNGNGFY
DSSRSTTSSECDDKASRGTPSSPEKRTIDQVETTGDDSSPPPAKRPCNDC
SGSVSKKDLVDVLKDFLREQRKRDEENFAKLQQLHKEKLDAVVKFLDMFQ
ELVKKV
Run BLAST on NCBI

transcript from alignment at sc0000002:1534920..1544240+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000489 ID=TCONS_00000489|Name=TCONS_00000489|organism=Clytia hemisphaerica|type=transcript|length=9321bp|location=Sequence derived from alignment at sc0000002:1534920..1544240+ (Clytia hemisphaerica)
ATCATTTGTTCTCAAAACTGTATACAAAAACTGGTAACATTAAATATTGT TCACAAACTTTAAcacctttaaaattttgttaaagtTTTCAAGTTTAACC AATTTCAATTTAGTTTTGTTTTAACTGTTAGCCAACTTAGAGCTAGTTAA CTGTTGGCTAGGTTTAACTGAAAAACAACTGAAAGAACCTGGTTAATTAA AGTAACATTATAATTCAGACTCAGATTTGATTGTTACTTTACGATTCAAA TTCTTGGATGATTGAAAACATGGCAACCGCCTTGCAGCAAACGGAGGTGT TCGATGCTAACAAAAACAATAATATTGAAATTGGTAAGCATGCTACATta ctgtacagggtgtccctaattaaagtatcgagtttgaacatgcgattgag tagaaaagtttgtgtgtgttatcgctaaaatataagaacgttctcacagg cttattacaaaaggtagttacaacgtataaattaatcgtaatgacaaaga aaaaagagggagagcttaaaatacaattttgtgaacacgcacatagaact ttctactcatagttgtgtttcgactcgatactttaattagggacaccctg tattatatcatgaacatataaacaacTGGACATCCattctttttgtagaa aaggctgctagcttcgttgccgcctcgttaaaagcataaaatgaaacaat cgattttgatgatataccacttgggaataccttgctaacaacgtcaaaac ttcgacaaaagtctctgttgttctactcttctcaagtcgttTATCTATAT NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNgttcaagctctatcaatccttttacct aaataattcaaagaaataaaattatgacggagtattgtcggatttttcat accaattttgaaatacaggcggtaacgaagctcgcttcaaagagacaata aaagatagacgtccagccgtttatatgttcatgattatATATATCTTCTT TAGCAAATCCTAGTTGCTGAGAAGACCCAAAAGAACCATTAGAAAATCTT TGTTGAGGCTTGGCTGTTCTTACTGTTTTAAGTGAAGGTGAAGTGAAGGT ATTTAGAAATTATTATCGCTTTTACAGAACCTtcaatttgttcaaaaatt gaatcACCGTCCTCAAAGACTCTTACTTTCACTTAAGTTGTTCTTTGTAT TGCTTGCCAATTTTGCCATATTATTCCAATGAAATTATTCTTTTATCGAA AATATCCGAGATTTTATATTTACATGGTGCTTTAGACTAAAGAAATATCT AagacatccccttctcacagacccactgggatccCTTACCACTTAAaata ttggccaaaatatcgtctccagtggaaaattatactttaaTTTTAGTCCC CGCttaaaataatcagataagctaAACTTCACTGCAGAATATTGTGCGAT TTCTTTCATTTCCACTGAATcttctggctcgaaaacaatggaattcaaat ccccagccataagaaaagatgagaatatcaatcctcATCGAGGTTCAGTC CGGTATTTTACCCCGACTGGCTGAGAAAGTCTttccgggtctgtgagaaa ggggcgTTCTAAGATTTcctaaaagttaagaatatacgatgaaatggaaa aacaacattcttatgaaaaatataGATTCTTTGTCAGGCATTTTTCAGCA CTTTCAgcctaaaatcattttttcatcatattctcatttttcaaccattt cagggtgggtgggaaatttttggGTTGTATTCTGAATGAAGCACAACTGG AATATGGTTAAGACGTTTTACAGTCATTTGTCACTTCTGACATTGGGGAT AATTTTGGTCCTGACATTATTTTGTGATCGCTTTTGATTTGATTAAGCAT AAATGAGTTTTCGCGTCGCggacatttttttttctctattcATGTTGCCT ATGTTTCATTTTCGAGGCTTAAATTTTTAAAAGGCGCGGTTTGCTTGCGT AAAAAATTGTAACATACTCATTGAGTATAAATTCATTTATTGTTTCGGTC ATTGGTTAAACATAAAACCGCGCGCTATTTTTGAGCATTGttaaaattct ttttatttttttattttttttattttttgcaaagaaaatgttttttgagc TACCTTTCTGTTTTGTTTCTAATGTTTAGAAAACCAGTTCAAAAAGcgtt ttgaaacatttttacaaactttcatgTTTTGACTggtattcaaaatttca aacgaaTTCCAACCAAAACCTTTTTTGCTGAAGACGCagttaaaaatatt gacaaaaattgataCCCTTTATATgacttgattaaaaaaataaaaaaact tgtaattttTGCAGAGAATTAGTGCgcgcatttttctttttaaagccctc tttgttttgatattcgGCATAACTTTTAACAAAAGGCTCACCCCGCgcgt tttttctttcttgtgttctattttatttcaaaaatttaaagggACCCCAT GACAATATAGACGCAGTGTGGTGTGTAACTTTAGCTTTGACGCGATGAAc cgtttttaatgaaatttaaaacacTACGTGATACCTCTTAACGTTTCACG CTCAGGTTGTAAAATTCGAGCTGAATTAGACTGTTGCAAAGTTATCCAAT TATATTATTTGTCTATCGTGACAGTTTGTTTCTAAATACTGTAAGGTGGA TCAGAGCCTCGGACTCGGTTTCTAAACAACAGAGCACTTTCTCTAATAtc aacccccgggggggggcactcaaggtaaataacctaccagacgttcggcc cttaagggtaggtttttcaaagttcagctagtgcactgtaagggtaggaa attacaaaactgcactgaactgcactgtaagggtaggaaattgtgataaa aggccaattttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNgaacaattgcgcggaacaatagaattcaaaagaatactg caagcaattacaaatgccaggctggtctaaacgcagccactaGCAGCTTT CAAAagctttgaaaatctttgtAGAGCTTCGAAACCTCCTAACgcgtttt tctataagaactaACTATAAAAGAACATGCGGCTAGTTTTTACTGTTTTA TTCAAGGTTTTTTTACGTTAATAACCAATTTTGCaagattttcatcattt tgatgTGAGCAAagaaaattgcgtgattgcgtgttGGCAAGATGGGGGTT TATTGCTGGGCTGGGGAGACCATTGCTGATTTAGTTGATTTTTCTTGAAG AGAGGTCAATCTTTTCCTCCTCCCTTGAAATGAAGAGATCAGATCTTTGA GatatttttacgaattttcGGGCTGGTTATTCTTGGTTGTTTAAACCAGT TCAGCTCTGTTTGAAGACAGGTTTTATCTTAGTTTTGTACTCGCAAACGA AACACTCGAAACAGATTTTTTTTGACGGAACAGAACAGAATATAATAACT CACTTTCGTTTAACGAACTTTTTCCAACGAAGTTTAAAATTCTATCTTTG GTAGAGATAAAAAAAGTTTGGtcaatccaaacataaattgtagTAGATTG TAGCCGCtagaaagtttttttcataggtaaaatttttcttctttccctTT AAAGAATATTACATACAGAATAATTTTTCCGCTTACAGCTTAAATTAGCG CGCTCTTTGAAGTTATTGTTCATAAGGCGCTATTTTtgagaatgattttt tctagCTCATTGATTTTACTGCTTATTCAAGCGAAATTATCGCGCGCGCC ACGAAAAGTTGTTTTTCTAAAGTCGCAAAAGATAAGAGACATGGCTTTAG AAACTCTTTAAGCTAACCTATAAACCCTCTTTTCTATGCTTGCAACGCCC CTACCACACAATCCAGCTGCATAAAATGTATACAAAGTTGACTGTTTTGA ACAATTTGCTTTGGTCATAATAATGATATAATTATATCAAATTACTACAT CAATAGGCCATAATTATGTACAATTTAAGCTCTTAAATTAGAAGTCAAGC AACTTGGTAAATTTCCCAAGCAGGACGTACAAGCAAAACAAGGAGCCTgg attttgcaaattttctttctttctttttcaaatgagAGGCTGTACTCACA CTTTGAGCACACTGAGTGCATCAACCGTGATAAGAGTCGCACGCGCGCCT ATGTCGCACGCTCTCGTAAACATGAACAATAGAATGGAACTTTAGCCAct attgtttcttttgttttcattgttcTCATTTgttaaacaataaaaaagaa gaaagttttccaaactgaaaaaaaaattagaacattTGTAATCTAACTTG AACTCAGACGTGTTTACGGGTCAGCCAACCAGaaaaggtttttgaaaaca acCATGCATACGTTTGCTGGATCTTTGAACCAAGCAATGTTTTTGCAAGA AGCTACTGTTCCAGACTGTTTGAAAGGTACTATTACTAGATTCATTGTGT TTTGATAATTTGTGAACTGATTTGCatggttttaaagttttcatattttt gttcTCTGGTTTCGGCTTTGGTTTATTCTTTGGTTTCAAccaagccttgt gttcttataaaaaagcatgtttaATCTGATTTGCTTGACCTGATTTTTGC TTGACTGCTTCgtccttcttttttttttttgaaacaccgGTGTCACAGGA AAAAAGTACTCCCCGAAAAAAGTACTCCCCAGTACTCCTGGGAGTACATT CTTCCCAGGAAATTGCCACCCCCTCCAGGAAAAAAGTACTCCCCATAGAT ACTATGCTGGGAAGTCAATTTTCCATAAAAGTTATTTTGAACTATTAACC GACCCATCAACTTTGAATTTAAGCGAAGTTTCAGATTTATGGTcgagaaa aaattgaatacttaCTAAGTCAGGTAAAAATTTAGTTTGAGAAGAAAATT TGGCTGCTCGGAGACCCTTTATCCAAGTTTGGACTAACTTGTTTAGCTCT AAAACAAGCCTCTAATTTTGCgtttcaaatattatttttctaaatagggt gtaaatattctgaaaaaaatcctGCAAAAAAAGTAGATATTTTACTTGGA TAGCCCAAATGTAGGACTACTTTTAGACAGTATTTCGATTGTTTATACAc ggtcaaaatttcattcaaacaaAATAAGTGCTTCTTTCAATAAGGATGTG CAGTTTTTCTTTGAGTTAAGGTACTTTcaacaatttggaagcgctcttaA GCACTTAAGATCTAAAATGTTCAAGAATAGTCCAATAAggtcccaaattg aaatattcgattacatttaacaaaacttaaaagcgactttctcgccaaaa caagaaataaccaaaattctcaatatattttgacacAAATTAGGGGAGTA CAAATTTCCCAGAGGGGTTAAGAATTTCCTGGGAAAAAAGTACCGGGGAG TATCTATTTCCTGGGAGTACTTGTTTTCTGTTACACCGGTTTTAGATAAT CTTTGTATCTTGGTTGCATCTgcacattttgttttttataagaacatttt aaaatattcttattttcaccattttgtgagaatgtttttcaccattttct aaTAAATAGTGTGTTTCAGAgtaaagccttaaaacgttCTTTTGGTCAtc aaaaccttatgttcttataaaacgtgAATACATTTCTGAATGTCTTCCTT CTTGGACTGGAGTCTTCTTATCTTTTGACTTTCGTGTATTTATGGACAAC GCTCCTTTACAGAGCAAGGATACATCAAAAGATTTTACctcattggaaag ataattcAACGTGGATTTctttagaaattatttttaacttAAAGAAAAAC ACCATACTGCTAGGATAGGATTTAGAATGTACTCAAAATTACGAATTTAA ACGATAAAACTACATAGTGGCGAACAATTGGTCTACTTAGGCGgttcttt aaaaagtttttgcgGGGTCTTTACTTCTCCCTTAATAAATCCGTTTTAAG AATCTTAAAGTTTATCATTATATTCAAGTTCACTTCAACCATTTTCCATT CAGCATCACGTCCAAAGCCATAAAATCctaatatttaatttttcgaattt tcaatTTACAGAAACTGCCAACAAATTGGTGGAGATGTATGAAAAACAAG TGCAACAAGCAGCTCAGAACATCAAAACCGAACAAGTCGTTGCTAACAGT ATCGCCAACACTCTTCTACAACAACCACAAACTCTCTCTCAACAAACCAC AACTAACAACCTGATTCAACAACAGCAACCTATCGTGCAACAAAATCCTC AACAAATTCAACCAATGGACACCACAACAAACACAACAGAAACAGAtaca acaaacaacaaagacaacTCAACAGAAAACATTGATGTCACTTCAGTGTC AGTCGCTAACAATGTCGCACACCAACAACATCAGCAGCAACTTCAACAAC AGTTGCCACAACAATTACAACACCATCAACCACCacaacaaaacaattta aaCATAGTTCTTAATGGTGACCAAAACCAACTGAAACCATCACCGGAAAA TGTGGATCCAAACGCTCAACAAATGGGAGTCTACAACCGTGAGATCCCAC CACCAAACAGCATCTATGGTATCGAGAGCCTCACCAGTAAGCCATACGAC GCTGAAGCCTCCAGACAACTCACCGATGTGATGCAGTCACCACGATTCCA AAACGGCTACAACACCATCGCGTCCCCTCATCACTCCTCCCCAGACCGCA ACAACCACCGCATGGATCAGACCGGCAACTGGCTATCACCAGGCAAGAGT CTACCATTCAGAGGCCTGTGTCCACCTACATCTCCCTACGTTGACAACCG TGACAGCATGGTACAAGCAGCTGCTCATGCTGCTGCAGCAGGCACCCAAG CAGCCAGACGATTCATGCCTCCATTCTACGGTGGCACCAATCGGAATTTC ACCCACCCTACAACCAATGGTACCGCAGACCGCAACCGATACGGCAACTA CCCTGTTGGCAGCCCTATGATGTCCACCCTAGGCTACCCAAGAGACACCA CCATGGATAACCGATACAATCTTCACATACCACCAGCTCTTAACGGGTTC GGAGAAGAAGACAAATTCAAGTTATCCCCACCAAGTCTTGAAGACAAACA CATCTGGACCAAACAAGAGGTGGAGCTTCTCTTAGATCTCTACGAAGAAC ACAAATCGAAACTCCAAGACCCACGTGTACGAAAAACCAAAGTTTGGGAC GACATTGCTAAACATATCCACGAGAAACTGGAAGCAGATGTCAATGGGTG TCAATGTAACCAAAAATTTCGTAATATGAAAGCTGATTACCAAAAAGTCG TAGAGCACAACGCAAGAGCTGGATCATTCAGAAAAACATGCAAGTACTAC GACCGGTTAGAAAAACTCTTAACACCAGTTAGTGAAACCGATAAATTACG GTGCGACGAAAACGGAATGAACAATACCGGTTTCGCAAACGGATTCGGAT CTAAAGCTGGTACACCAAACGGCAACGGATTTTATGACAGTTCACGAAGT ACGACGTCctccgaatgtgatgataaagCAAGTCGTGGTACGCCCTCTTC GCCCGAGAAGCGCACAATTGATCAAGTTGAAACTACTGGCGATGATTCCT CGCCTCCGCCCGCTAAACGCCCTTGTAATGATTGTTCTGGATCTGTCAGT AAGAAAGACTTGGTAGAtgttttgaaagactttttaAGAGAACAACGTAA GCGAGATGAAGAGAACTTTGCAAAATTACAGCAACTTCATAAAGAGAAAT TGGACGCTGTGGTCAAGTTTCTGGATATGTTTCAAGAACTAGTAAAGAAA GTGTAATGTAATTTAAATTGATTTCTCTAGTGTAACCTATTTTACCACGT TAACATTTTCTTAACTTCTTAACTTATACCATAACAGATTTCGCTGCAAT ACTCAAACTTAACTGTGGCTTTGAAAAATGCTAGCTTttagaattcattt ttttttttgtatcttcaattttattttatctagTTTGAACTAAAATACCT AAAGTGCTAAGTAATTAAATCACtaaattttgtttatatctGAATCTAAT TTTTATCACGTTTAAAGCTCTTGTAAATATTTTGTCAATTTAATAAATTT CTGTGTTTTAATTTATTCATGATTTATTTATTGCCTAAgttattatttat taatttattatgATTTATGAA

Coding sequence (CDS) from alignment at sc0000002:1534920..1544240+

>TCONS_00000489 ID=TCONS_00000489|Name=TCONS_00000489|organism=Clytia hemisphaerica|type=CDS|length=3642bp|location=Sequence derived from alignment at sc0000002:1534920..1544240+ (Clytia hemisphaerica)
ATGATTGAAAACATGGCAACCGCCTTGCAGCAAACGGAGGTGTTCGATGC
TAACAAAAACAATAATATTGAAATTGAAACTGCCAACAAATTGGTGGAGA
TGTATGAAAAACAAGTGCAACAAGCAGCTCAGAACATCAAAACCGAACAA
GTCGTTGCTAACAGTATCGCCAACACTCTTCTACAACAACCACAAACTCT
CTCTCAACAAACCACAACTAACAACCTGATTCAACAACAGCAACCTATCG
TGCAACAAAATCCTCAACAAATTCAACCAATGGACACCACAACAAACACA
ACAGAAACAGAtacaacaaacaacaaagacaacTCAACAGAAAACATTGA
TGTCACTTCAGTGTCAGTCGCTAACAATGTCGCACACCAACAACATCAGC
AGCAACTTCAACAACAGTTGCCACAACAATTACAACACCATCAACCACCa
caacaaaacaatttaaaCATAGTTCTTAATGGTGACCAAAACCAACTGAA
ACCATCACCGGAAAATGTGGATCCAAACGCTCAACAAATGGGAGTCTACA
ACCGTGAGATCCCACCACCAAACAGCATCTATGGTATCGAGAGCCTCACC
AGTAAGCCATACGACGCTGAAGCCTCCAGACAACTCACCGATGTGATGCA
GTCACCACGATTCCAAAACGGCTACAACACCATCGCGTCCCCTCATCACT
CCTCCCCAGACCGCAACAACCACCGCATGGATCAGACCGGCAACTGGCTA
TCACCAGGCAAGAGTCTACCATTCAGAGGCCTGTGTCCACCTACATCTCC
CTACGTTGACAACCGTGACAGCATGGTACAAGCAGCTGCTCATGCTGCTG
CAGCAGGCACCCAAGCAGCCAGACGATTCATGCCTCCATTCTACGGTGGC
ACCAATCGGAATTTCACCCACCCTACAACCAATGGTACCGCAGACCGCAA
CCGATACGGCAACTACCCTGTTGGCAGCCCTATGATGTCCACCCTAGGCT
ACCCAAGAGACACCACCATGGATAACCGATACAATCTTCACATACCACCA
GCTCTTAACGGGTTCGGAGAAGAAGACAAATTCAAGTTATCCCCACCAAG
TCTTGAAGACAAACACATCTGGACCAAACAAGAGGTGGAGCTTCTCTTAG
ATCTCTACGAAGAACACAAATCGAAACTCCAAGACCCACGTGTACGAAAA
ACCAAAGTTTGGGACGACATTGCTAAACATATCCACGAGAAACTGGAAGC
AGATGTCAATGGGTGTCAATGTAACCAAAAATTTCGTAATATGAAAGCTG
ATTACCAAAAAGTCGTAGAGCACAACGCAAGAGCTGGATCATTCAGAAAA
ACATGCAAGTACTACGACCGGTTAGAAAAACTCTTAACACCAGTTAGTGA
AACCGATAAATTACGGTGCGACGAAAACGGAATGAACAATACCGGTTTCG
CAAACGGATTCGGATCTAAAGCTGGTACACCAAACGGCAACGGATTTTAT
GACAGTTCACGAAGTACGACGTCctccgaatgtgatgataaagCAAGTCG
TGGTACGCCCTCTTCGCCCGAGAAGCGCACAATTGATCAAGTTGAAACTA
CTGGCGATGATTCCTCGCCTCCGCCCGCTAAACGCCCTTGTAATGATTGT
TCTGGATCTGTCAGTAAGAAAGACTTGGTAGAtgttttgaaagacttttt
aAGAGAACAACGTAAGCGAGATGAAGAGAACTTTGCAAAATTACAGCAAC
TTCATAAAGAGAAATTGGACGCTGTGGTCAAGTTTCTGGATATGTTTCAA
GAACTAGTAAAGAAAGTGTAAATGATTGAAAACATGGCAACCGCCTTGCA
GCAAACGGAGGTGTTCGATGCTAACAAAAACAATAATATTGAAATTGAAA
CTGCCAACAAATTGGTGGAGATGTATGAAAAACAAGTGCAACAAGCAGCT
CAGAACATCAAAACCGAACAAGTCGTTGCTAACAGTATCGCCAACACTCT
TCTACAACAACCACAAACTCTCTCTCAACAAACCACAACTAACAACCTGA
TTCAACAACAGCAACCTATCGTGCAACAAAATCCTCAACAAATTCAACCA
ATGGACACCACAACAAACACAACAGAAACAGAtacaacaaacaacaaaga
caacTCAACAGAAAACATTGATGTCACTTCAGTGTCAGTCGCTAACAATG
TCGCACACCAACAACATCAGCAGCAACTTCAACAACAGTTGCCACAACAA
TTACAACACCATCAACCACCacaacaaaacaatttaaaCATAGTTCTTAA
TGGTGACCAAAACCAACTGAAACCATCACCGGAAAATGTGGATCCAAACG
CTCAACAAATGGGAGTCTACAACCGTGAGATCCCACCACCAAACAGCATC
TATGGTATCGAGAGCCTCACCAGTAAGCCATACGACGCTGAAGCCTCCAG
ACAACTCACCGATGTGATGCAGTCACCACGATTCCAAAACGGCTACAACA
CCATCGCGTCCCCTCATCACTCCTCCCCAGACCGCAACAACCACCGCATG
GATCAGACCGGCAACTGGCTATCACCAGGCAAGAGTCTACCATTCAGAGG
CCTGTGTCCACCTACATCTCCCTACGTTGACAACCGTGACAGCATGGTAC
AAGCAGCTGCTCATGCTGCTGCAGCAGGCACCCAAGCAGCCAGACGATTC
ATGCCTCCATTCTACGGTGGCACCAATCGGAATTTCACCCACCCTACAAC
CAATGGTACCGCAGACCGCAACCGATACGGCAACTACCCTGTTGGCAGCC
CTATGATGTCCACCCTAGGCTACCCAAGAGACACCACCATGGATAACCGA
TACAATCTTCACATACCACCAGCTCTTAACGGGTTCGGAGAAGAAGACAA
ATTCAAGTTATCCCCACCAAGTCTTGAAGACAAACACATCTGGACCAAAC
AAGAGGTGGAGCTTCTCTTAGATCTCTACGAAGAACACAAATCGAAACTC
CAAGACCCACGTGTACGAAAAACCAAAGTTTGGGACGACATTGCTAAACA
TATCCACGAGAAACTGGAAGCAGATGTCAATGGGTGTCAATGTAACCAAA
AATTTCGTAATATGAAAGCTGATTACCAAAAAGTCGTAGAGCACAACGCA
AGAGCTGGATCATTCAGAAAAACATGCAAGTACTACGACCGGTTAGAAAA
ACTCTTAACACCAGTTAGTGAAACCGATAAATTACGGTGCGACGAAAACG
GAATGAACAATACCGGTTTCGCAAACGGATTCGGATCTAAAGCTGGTACA
CCAAACGGCAACGGATTTTATGACAGTTCACGAAGTACGACGTCctccga
atgtgatgataaagCAAGTCGTGGTACGCCCTCTTCGCCCGAGAAGCGCA
CAATTGATCAAGTTGAAACTACTGGCGATGATTCCTCGCCTCCGCCCGCT
AAACGCCCTTGTAATGATTGTTCTGGATCTGTCAGTAAGAAAGACTTGGT
AGAtgttttgaaagactttttaAGAGAACAACGTAAGCGAGATGAAGAGA
ACTTTGCAAAATTACAGCAACTTCATAAAGAGAAATTGGACGCTGTGGTC
AAGTTTCTGGATATGTTTCAAGAACTAGTAAAGAAAGTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000307XLOC_000307Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000489-proteinTCONS_00000489-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000489-exon-sc0000002-1491911889:1534920..1535252TCONS_00000489-exon-sc0000002-1491911889:1534920..1535252Clytia hemisphaericaexon
TCONS_00000489-exon-sc0000002-1510915933:1534920..1535252TCONS_00000489-exon-sc0000002-1510915933:1534920..1535252Clytia hemisphaericaexon
TCONS_00000489-exon-sc0000002-1575043694:1534920..1535252TCONS_00000489-exon-sc0000002-1575043694:1534920..1535252Clytia hemisphaericaexon
TCONS_00000489-exon-sc0000002-1491911889:1542131..1544240TCONS_00000489-exon-sc0000002-1491911889:1542131..1544240Clytia hemisphaericaexon
TCONS_00000489-exon-sc0000002-1510915933:1542131..1544240TCONS_00000489-exon-sc0000002-1510915933:1542131..1544240Clytia hemisphaericaexon
TCONS_00000489-exon-sc0000002-1575043694:1542131..1544240TCONS_00000489-exon-sc0000002-1575043694:1542131..1544240Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1534920..1544240 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 10.6549 6.7833 6.65178 11.1202 3.7685 1.13244 10.1995 9.83432 7.03821 5.94231 6.45762 25.3181 9.91102 7.74957 0 0.211985 4.33129 4.63683 1.75257 3.45733 0.99195 5.50128 0.76011 0 0 0.208956
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017877Myb-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000489 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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