XLOC_000280 (gene) - C. hemisphaerica

Overview
NameXLOC_000280
Unique NameXLOC_000280
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000002:586753..598200+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_000280 ID=XLOC_000280|Name=XLOC_000280|organism=Clytia hemisphaerica|type=gene|length=11448bp|location=Sequence derived from alignment at sc0000002:586753..598200+ (Clytia hemisphaerica)
aaaaaatgttataattatAATGGATGGAAAAAGGACTTGGCCTGATGTGA
TTGGGATGAGCAAAAATTAACCTTTTGACCTTGTATTACCATTTGAGATT
GAAGATCCTTAATGTATTGAATTGGTTTTGAAGTAATGGATATGAAAACT
TCATATTTTTCAGTAAGTTTAACTTTATAttatagaaaattattttagag
AGTCAAAAGGTCTTATGAAATGGTCTAATATTTTACCGTAATTaactatt
tttcaatttattgagTTTACAGAGGTATTGAATAGTTTAACCTAGTCTTA
CTTTTCACATAATTTTGTTAATAGTTTAGTATTAGTCTAggtcaatttaa
tttgttgttttacgggccaagctacccaaaaagagGGGTcagtcggtcgg
cgaaaaaataaaaataaaagtagaatttcacctataaaatatcctaaaaa
gcaacaaaaactgctacatcttgacaaaaatgcgaaatagaaaataaaaa
ggcaCGAAAAggtcgaattcatggataaaatgaaaaactgaacataaatt
tttcaatttttattttcatttcgatttttggaatttcagggtcggtcggg
tccgtaaaacaactaatcaaattgttCTCGCCTGATAGACTTTCACCAGT
TTTAGTAGTTTTAGTACCGACCACTGATATAGAACCTCTCTACCTCTTAT
TGTTTACATTTGAATTGTTGTTTGGTTTATTTTTTACGAAAGGAAAAAGT
AAGATGGTTTTTGGTTTGAATTCTAATTCATAAGCTACATGTCACCATAA
AAGCTGTTTACTAAAAGGAAGGTCCTTTGAGAATTTAGACTATAAAAGCA
ATAGAGAAAATGAGAAATCTATTTTGAATTATTTCCAACTTTTATCAGAA
ATATAACTTACTGGAGTTACATAGAATTGAGAGACAAATTAATGTAGGGG
AGACTcccttaacttttttttctaatcttgttTTTTATAAACCTGTGCCT
TGAGATTCTCGGtttgctttttggacctaccccggtgggctgtaggtcct
ataaattaacctttgtccgtccgtccgttagttaccagcttttctcgaga
ttggctcattagttttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtagcaatgcccacc
atcaagcatgtttcaattttcaataaaattgatttttgaagccggaactt
tctaaaaatcgccggaacagcccattttcgccggaaaactgttatttctt
gaatttcttgagctgtactttatattttttcatgaaattgtgcacactga
tgcaaaatgtcgatacctaaattgtgacggagcccgattttcgaaaaaaa
ttcaattccggccgaaaatggcggaaatatgccggaaaaactggtttttc
ggcattttctcgagatttcatcattaactttttcagattttttgctcaaa
gatgcgtattaacaatgcccaaaacatggcctagtccgattcttgagaaa
aaatattttccggccgaaaatgccggaaatatgccggaaatcgccgtttt
tctggattttcattggacttttcccatataattggttattttttcattct
aaaacattatcaatagcaatgcccaccatcaagcatgtttcaatttttaa
taaaattgatttttgaagccgggttttctaaaaatcgccggaacagccca
TAATCGCCGGAAtaacaggttttttttaatttctcgagctgtaccttata
ttttttcatgaaattttgcacactggtgCGAAATggtaatacctaaaatg
tgacggagcctgattattgagaaaaaaaactttccggccaaaaatgccgg
aaatacgccggaaaaaatagttttttggcatttcctcgagatttcattat
cagttttttctgaatttttgcttaaagacgTAAATTAGACGTCTAAAATA
TGACCGAGTCCGGCGGTTTTAGAGNTAATTCAATTCctgctgaaaatgcc
ggaaatatgctggaaaaactgtttttttggcattttctcgagattttatc
ataagtttttttctgactttttgttcaaagatgcgtattaacaatgccca
aaacatggccgaatccgatttttgagaaaatcttttttccggtggaaaat
gcctgaaatatgctggaaatcgccgtttttctagattttcattggacttt
ttcctttttccgttgtttttttcattcaaaaacattattaatagcaatgc
ccaccatcaagcatgtttcatttttcaatgaaaaatttatttttgaagcc
ggaactattttaaaagtcgccggaacaacctattttcgccggaaagacag
tatttcttgaatttctcgagctgtactttaNNagccgaaaatgccggaaa
tatgtcggaaaaatcggttttttgatattttctcgaattttcatttctag
ttttttccgatttttttgcagaaagatgcgtctttgcaatgctaaaaaca
tggccgagttcgatttttgagaaaaaagtttttccggttgaaaatgccgg
aaatcaccgtttagtttacttatatttctatgcttttcacacaaaaacat
tatccataacaatgctcaccatcaagcatgattcaattgtcaataaaact
gatttttgcgaccagaacttcctatttattatttccctacaaccctacaa
cccttccctctccccccatcaacaatcaatgatgaatttattgtgttgtg
ttttttcgctaaacgctatattttctgactgatttttttcatttttcttt
tcgcattgctatctaacttttatCATCAGGtaaggtaggtccattcagca
tattgcttgttGTTCTCGAATATGCAATATTTAGCGTCTGATTATCTAAC
ATGTtctattgggccattccattttataaccatacaggggtggatgaaca
tttccaggggatagCCTGAGAACAATTTCCAAGAGGTTTAAATAAGTGTT
TTTTCGTGTTTCtagggtaaaaagttattcttaaactttccagggggtaa
acgaCAAATATTAGTTCGCCCAACCTCACTTTAAgtcatgaaaataattt
tttccaggctcttttttgcaaattttgctattttccagggggtataaaCA
CATTTCAAAGAAATGcgttttgactttgatttctttttaaaatactgAAG
GATTTGTGAACATAAATTGCATTTGTCTAATCCAGGTCACGAATGTATGA
ATATTGACATTCTAGTTCAATTGTTATTTCTTTCCTTCTTAGAAATATCT
AAAAACTACCTGGGTGATCTTTAGTTCTTTTCAACAAGATATCAAACGCT
CACCGTTCACCGTCTTGTGACGTTTTACTTTCATATATATTTAGTGAAGT
ATCAAATTATCCTGAGGGTAATTCCTTGATAATCTATGTTATTAGTGTTT
GTAGTATATGTTCATAAGTGCACTTGTGATCTTTTCaaataaaggaaaaa
taacataaaaaatCCCTTGATAATGACCTGGTTCGTTTTTTAAAGTTCAA
CTTGTTACATCacacttttttcaaatctttcacGGGGGATTTCCCGAGGG
TTTATTAGGCCGTATTGGGAGAAAAAAAGATTGGAAAGTTAGGATATTGA
GGGAAAATGTGCAAAGGATCTTGTAACTGTCATATATTTATCTCTTATCT
GTACGAAACAATATTAAAAGGTTGGGACCAAATTTATTAAGACTAAATCG
agaattttgacctttttacGAAACTCAATGTATGTTTTTTTNTATGTATC
TCTTATCTGTATGAATAATAATATCTGTATAAAGAGGGTGGGACCAAATT
TATTAAGACTAAATTTCGAGAGTGAGAGACTAAACCTACCCAAAAAACGC
ATAGGCCTCATAGCTAACTATGAGGATCACAGCGCATAAATTAACATGTA
CTACAAACACTACTAACATAGATTATCCAGGAATTACCCTCAGAATAATT
TGATACTTCGCTAAATATATGGTTGATATCTTGTTCAAAAGAACCAAAGA
TCACCCAGGTACTTTTTAAATGTCTTCAAGGGATAAACGAAATGAACAGT
GGAGCTAGAGTGTCAATTTTGATCCATTCGTGCCTTGCATTAGAAAATCG
CGATTTATGTTCACAAATCTTTCAgcatttttgataaaagttgacgaaaa
tttcgagaattttaatgtttttacaaaactcaaaatgtttattttttttc
aaatttattttgtctGAGAAAGTTTGAATGAAATGATCTTTTCAGCGATT
TtttcatgtttaaaaaaatctttaacgaACGTACGTGTCTAATTGCTAAA
GTGTTTCTAAGTTCCCTTCTCGATCTAGAATTCCCagaaaaattgatgag
taaTCACAATTTTATTCCCTGAATTAGTCGAATTAGGATATAAGTGTCAA
TACTGAGACGTAAAACCTTCAAATTGAATATACTGAGAAAGGAAGACAAA
CGTTAGAAGGACAAATtcatttgttgatttttgagAGGGaacatttaatt
tgaaaaaaatacgtaagtaacttttgatttttgacaGGGTTATACAGAAT
CATGAAATCGTTAGgctctgctcatcctctagcgaaagaagtttcttata
ggaagtatatctatagaggtctgcgattcagactatgaAATCGTGtgaaa
ttttcacatgaaaaatctcatctcattgggctcttccagaaaatgtccgt
acatgggggtggaggatatattgtccgggggtagcgaaaaatcatcaaaa
tttgccttgtccggggggtaaatttgctctgtctgGAGGTAATTTGgctt
gtccggggggccaaaagtcactttgtccggggggtaaatcactgaaaatt
gttatatcctccacctcccatattcaaattttttttctggaaaatcccat
tttaagaaagattttatttatttagtatTGTCGATGCGTTAAAGATATAC
TCGAATAGATAGGATTTCAATCTtattgaagaaaaatttctcaCTTTGCC
AAAATTCACTGTCTCATTGTAATTGACCTAGAAGATCTTTGTCGgaggaa
aatcttttttcacgATAAGATGTTTATCAATCGTGATGAAACCGTACTTG
TCCAGGGTtaaatcacaaaaataaatctcgtacaattttttcattcaagA
AAAAAccagaaatcaaaatcaaaatctcgtGCATCTAATTTGATTGATTT
AACGCTCGGTATTACCTATGTATTTATGCTTCTAAAAGCATTCCCCACCA
ATAAAAAAGTCCCCAATATTTTTCAGCGTAGGGATTTTTCGTATTGACCA
GAAACCATTTTTCCGGAAATCACCACGATTGTCCATTTCGATTTTCCCAG
TATACACGTGTGCGTGCTGCAAAATTTGATGACGAATCATGACCTATAAA
AAAGCGTTTGAAAAGTTTCTAACAGATTAAATACCTCCTATGTATTGAGA
GGAAAGGAACTAAGCGCTTATAAGACAGTGAAGATTTGCAACTTTAGAAT
AAACAACAAAGTAACGTTTCAAAGTAAGTTCACAAAAATGCTTGATAGTT
TAGTTTGATTTTAACAAGAGGCTTGAAAATTAAAGTCGTAGACAGCAAAA
CTTTGTTAAATGACAATAGTATCCaggtttacatttttttgaatagaaac
aaagtttttaaaattgtaggGAAAAAATCTAGCTTCCCTCTTTCTTGTTT
CAGGATTCCTACCAACTACCTCTAACAACACCGAAAGACACAGCAGCAGT
GACAGACCAATACTATCAGAATTAACAACTATCAAACCAAACACAATGCC
AGAACTACAACATCAACAATCTTTAGAAGCAGTAACAGTTACAACACCTA
TTACCAATCAAACTTCGCCACCACAACCAATAACAACAAACAACCAGCAT
TCTGAACATGGGATCCAATTTTGTTGGTTTATCTTCAGTCTTCCTCTTGT
CAGCTCTTTCCTCTCATTCATTGCTTGTTTAATAGCATACAGAGTGGGTG
TAGATGAGAAACGCCTACAACCTTTACCTTTCATCCCATTTATCAGTGAC
ATCGGCGACGTCAAACCAGGATCTAGCTTCTTCACATTCTTTCTAATCCT
TAGCAGTCTGGTGACTCTCATAATTATCACAGTCAGGTATTACCAAGTAG
CTTCCAAAGCTGAAACTGACAAGTCTAGAAACAGCTCCCCAACAGAATTA
AGAAGCAACAGGGATAACCCGTTAGAAGAAGCAAGAACCAAACGATCCAT
ACAACGATTGAATACAGCAGCTTTGGTATCAAGTTGTATTTTCCTGGTTT
GTAAAATTGGTGTGTCATCTTTTCAGTTGAATaactataaaaaaattcat
cttggttttgcttgcttttatttttttggtgCAGCCCTTTATACTGTTTT
TCAAGTTTGTATCACTTTCAAGATGATTGGTGGTTTAAACGGACTGAAAA
AACTCCTTACAGGGGACATGTCTTCGAAGTGTCAAGGCTCTGTCttttta
tcaagagttatctGTTCTTTGGCACttatcatcaattttttcattgTTGG
TGTTTTTGTTACTGTACCCTCATTGAAAGTTCATAATCGTGGTGGAGCCA
ATGTGGGTCAAAGTGCTGAATGGGCTTTCGctggattcaaattatttttc
ttctcGACATTTTCGTATGAATTCTGGAAAATTCGTTTCACGTTTCTAAT
GAAGTTTGATGAGATTGAGAAAACGAAAACCGAAAGTTTCCCGATCAAAA
ATTGTGACACTACCGATGGGCTGCCATCGCAAGTATCATACAGCAAACTG
CAATGATCGTGACATTTGTATTGTATAGGCTTAACTCGCCATTTTGATTA
AGTCTGATATGTGATACATAAAGTTCTTTCATAAAGATTTGCGAGTTGAA
GAGCTAGATGTCAATGAACGTTAAAAATTAAATAACTTTAGACTGAAAAT
TTGACTTCTACGATTTTAGTCCCTTGTAGAACGCAAACTGTGATTCAAAA
AATTCACCTTGTATCTTGTATTTATAGAGACGACGAAGGTTGGGGGCCAT
CTTGCATAAGTTCATTTTTAAtttatcaagatttttaaacaaatttgaaT
ATCAGATCAGAGTTTTAATAGTGATCTAAATTAAATAATGTTATTGTAAA
TACGTTCCTTGATTTCATTTAAGTATCAAAAGTTTTACctatttttacag
ttttttttacaaaatgatatattttatgttttccaACTCCATGTccaata
tatttatttttcttgatttttaaagtaaagaaatttttaaagtacagtat
ttttgaattttgagtgAAATTCAGCAGAGACAATATCGAAGACATTTGCA
ccatcagatggtttgagatatttggccttAGTACCTTCTACGGTCCTGAG
TAAAACCTCCAAGTATTTTGGCCTAACTATCGAGATAACACAATTTGAAA
TTACTGAAAATGAGTTCTTACACGGTTAAACTTTCGTTGTAATTCTtact
aaaagtaaaaatatctcaaaccatctgattatccctttaaatggTAGGCG
TGATACAATTTTGACCGCTCTTTGGTGACCACTTCTTGATAACCTTTCTC
GGAATCCTAAAAGGGTGAATTAAAGGAACTGGGTTCGAGTTTTTAAGAGA
GGTACTATTCAACAGTTGTCAATTCTAATTCCCCCCCTCAGAGCAATCTT
TCAATTTCGTAATTCTGTAACTTTCAGACGTTaaaagttaagtttattct
tttAATGTAAatagtttttgtttattttatacgtgacaaaacaaacaaaa
gaagTAAAAACGTTTTCGACTGTTCAAAAATGACACACGCGAGTTATCTT
TATTCCCTACGTATTTTTCCTCTAAAATGAAACGTGATCTTTAGGCCTCA
GGCCTTCTAGAAAACTCCTAATGAACTCTTGAAAGAAAACCCATTAATTT
AAGTCTCGCCTAATTGAAATTACAAAGGTCTATCTAAAACCTGGTTTATC
CCAGGTGCTATCGACAGTCGATGTGTGTTTTGATCTAGAATTTAGAGGAC
CTTTTgctttaaaaacaattttacacccctgtctcacagccccgaccGAG
CTATTttcctcaatggggataaaaattctaaattttccagtggggctggg
gtcccagcgggtctgtgagacaggggtgtagtaTATTTTGATTAATACAT
AAGTTTTGACCATGAGTCAGAACTCTTTGAGACAAATGCTCCCTCTAAAG
ACACGAAAGGTTAATGTCAGACGCACATTAAAGAGAAGTAATCCAATACT
TCTCAAATACTGTACACGTTTgcttttcataagaacatccaaaatttTTG
AAGCCTTGGGATGTTcccaactttttgagttttaagcctaaaaatgttct
taacatgttcttattttcaccattttgtgagtatttttgcctattttcat
aagaaattggatgttttagagtccacaaagccttaaaatgttcttaactt
gttcttaataatttggtcatcgaagccttatgttcttacatagtttgttc
ctATAAACAACCTATACTTTTCAAATAATGTAGATTCGCATTATTGACAC
ATATAAATAGATGATTGACACAAGAGGTATTCAGATTTCCTTTTACAGAA
TTCTTTTACTGATGTGATGTTGGCTTTCGAGAATCTCTTGTGTCAAGTTT
CGTCTACCATCACTTTAAAAGTTTTCGGTATCTAAGTCTTGTATGGTCTT
GTAATATTTAAACTTTCATGTCTTTCGTGATTGGGGTTGCCAGTTTAAAG
CTGTGGGACCACACACCCTGGATTTTATGGGGCAACATATGGGCAACATA
TATAACTTTACAGTTATACacaaattttacacttttttggatttttgatg
ttttttctaCTAAAAGGTTGTAACAGTTGGTAACAGGTCTGAGACAGGTG
TTACacccttgtttttttttaaatggtggTTCtatcatttcatcatggat
atcaTTAACcttgtcaaatatttttatattatgcgGAGTATCAGAATCCG
CTCGGAGCATTAAAAGCTTCAAAACTTAGTGTAATAAACTTGAATcttga
ttttttaacctttcagtGAATGGAAGACTTCAAAAACTgagataaaacaa
aagaaatcgaaCTTCGTGAtaacaagaaaaacaaaatggctgattcGAAA
ATACAAGCCGAAGAAGAAACAAGAACAACATTAAATGCACCAAATCATGC
CAACAACAGAAAAAGCTACCAAATCAATCTGCGTTGGATTATCTTCAGCT
TACCTATCATCAGCTCTCTCTGCTCCTTCATAGCTTGTCTGATGGCGTAC
ATTATCGGCGTGAATAGTGGAACATTGAAACCGTTACCTTTTATACCTTA
CATCAGCGATACTGGAGATTTTAAACCGAATTCAAGTATATTTACTCTTT
TCTTGATTTTAAGCAGCTTNAGGAGACTTTAAACCGAATTCAAGTATATT
TACTCTATTCTTGATTTTAAGCAGCTTTGCAACGCTGGTTATTGCTATAG
TACGTTTTTACCAAATTGCAGCCGAAGCTAGATGCTCTATAGCGAACAGA
GCAGCTTTAGTATCTGCATTTCTATTTTTGCTTGGTAAAATCGTTGTTTC
GTCGTTTCAACTTTCATCAAATATTTTCGTCCATTTTGCAGCCGCTGGGT
TATATTTCCTTGGTGCAACGATCTACACGTTATTACAATGTTACATTACT
TATCGATTCCTTGGTGATTCAATTAATAAAGAAAGATTCGTCAAAGATTC
TACTTGGAGACGAGGATGTATTGTTTATTTGATTCGTGTAGTGTGTTGTG
TCGGTCTAGTAATCAATTTAATCATATTTGGCGTATTTGCAACAATCCCT
TCTTTAGAGATTCATAACAGAGGTGGAGCCAATGTGGCGCAAGCTACAGA
ATGGGCGTTGGCAGCATTTAAAATTATATTCCTATCAACATTCACTTATG
ACTTCTGGAACATCGAGTTCAAATTTGGAATGGAATTCAAAACAATCCAA
CCAAAAGATTTTCCTTCACCAGAAACTCAAGTTTCAATAGATATCGAGGA
CAATATTAGACTTGCTAGATATACAAGATTTGATTCGAAGGAGCcaaata
aagtgaaaattgAGTTCCATACATGAATAAAACATGACGTTAAATTTCAA
TCGAGCTAAAAACCGTAATTCACGAAGCCAAATTGAACATTGTTTTTCCA
AAAAGATATGCCTTAATCTCATTTACCATGGTTGTAGTCTAAATAATCGA
TTGAAAGTGAAATATAGCTACAATCCTTCGCAGGGGGATTtcttgtctca
aatattttgtccatgattgtacatATAATTCAAAGTttagatttttaagg
aaataaaaaataatatttcaggACACGACTaacaatatttttgatttata
taatttgaaattattttcaaaaagattacGGTTATCCCTTCGTGTATT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00000432TCONS_00000432Clytia hemisphaericatranscript
TCONS_00000433TCONS_00000433Clytia hemisphaericatranscript
TCONS_00000434TCONS_00000434Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00000433-proteinTCONS_00000433-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:586753..598200 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.05	1.88	0.71	0.4	1.91	1.14	2.99	2.68	2.44	10.7	1.42	1.84	6.65	5.98	4.19	3.32	5.4	6.19	7.15	8.42	2.23	1.77	5.77	7.73	12.72	11.9	12.77	13	5.63	5.54