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TCONS_00000432 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000432
Unique NameTCONS_00000432
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1313

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000432 ID=TCONS_00000432|Name=TCONS_00000432|organism=Clytia hemisphaerica|type=transcript|length=1313bp
aaaaaatgttataattatAATGGATGGAAAAAGGACTTGGCCTGATGTGA
TTGGGATGAGCAAAAATTAACCTTTTGACCTTGTATTACCATTTGAGATT
GAAGATCCTTAATGTATTGAATTGGTTTTGAAGTAATGGATATGAAAACT
TCATATTTTTCAGATTCCTACCAACTACCTCTAACAACACCGAAAGACAC
AGCAGCAGTGACAGACCAATACTATCAGAATTAACAACTATCAAACCAAA
CACAATGCCAGAACTACAACATCAACAATCTTTAGAAGCAGTAACAGTTA
CAACACCTATTACCAATCAAACTTCGCCACCACAACCAATAACAACAAAC
AACCAGCATTCTGAACATGGGATCCAATTTTGTTGGTTTATCTTCAGTCT
TCCTCTTGTCAGCTCTTTCCTCTCATTCATTGCTTGTTTAATAGCATACA
GAGTGGGTGTAGATGAGAAACGCCTACAACCTTTACCTTTCATCCCATTT
ATCAGTGACATCGGCGACGTCAAACCAGGATCTAGCTTCTTCACATTCTT
TCTAATCCTTAGCAGTCTGGTGACTCTCATAATTATCACAGTCAGGTATT
ACCAAGTAGCTTCCAAAGCTGAAACTGACAAGTCTAGAAACAGCTCCCCA
ACAGAATTAAGAAGCAACAGGGATAACCCGTTAGAAGAAGCAAGAACCAA
ACGATCCATACAACGATTGAATACAGCAGCTTTGGTATCAAGTTGTATTT
TCCTGGTTTGTAAAATTGGTGTGTCATCTTTTCAGTTGAATaactataaa
aaaattcatcttggttttgcttgcttttatttttttggtgCAGCCCTTTA
TACTGTTTTTCAAGTTTGTATCACTTTCAAGATGATTGGTGGTTTAAACG
GACTGAAAAAACTCCTTACAGGGGACATGTCTTCGAAGTGTCAAGGCTCT
GTCtttttatcaagagttatctGTTCTTTGGCACttatcatcaatttttt
cattgTTGGTGTTTTTGTTACTGTACCCTCATTGAAAGTTCATAATCGTG
GTGGAGCCAATGTGGGTCAAAGTGCTGAATGGGCTTTCGctggattcaaa
ttatttttcttctcGACATTTTCGTATGAATTCTGGAAAATTCGTTTCAC
GTTTCTAATGAAGTTTGATGAGATTGAGAAAACGAAAACCGAAAGTTTCC
CGATCAAAAATTGTGACACTACCGATGGGCTGCCATCGCAAGTATCATAC
AGCAAACTGCAATGATCGTGACATTTGTATTGTATAGGCTTAACTCGCCA
TTTTGATTAAGTC
Run BLAST on NCBI

transcript from alignment at sc0000002:586753..594556+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000432 ID=TCONS_00000432|Name=TCONS_00000432|organism=Clytia hemisphaerica|type=transcript|length=7804bp|location=Sequence derived from alignment at sc0000002:586753..594556+ (Clytia hemisphaerica)
aaaaaatgttataattatAATGGATGGAAAAAGGACTTGGCCTGATGTGA TTGGGATGAGCAAAAATTAACCTTTTGACCTTGTATTACCATTTGAGATT GAAGATCCTTAATGTATTGAATTGGTTTTGAAGTAATGGATATGAAAACT TCATATTTTTCAGTAAGTTTAACTTTATAttatagaaaattattttagag AGTCAAAAGGTCTTATGAAATGGTCTAATATTTTACCGTAATTaactatt tttcaatttattgagTTTACAGAGGTATTGAATAGTTTAACCTAGTCTTA CTTTTCACATAATTTTGTTAATAGTTTAGTATTAGTCTAggtcaatttaa tttgttgttttacgggccaagctacccaaaaagagGGGTcagtcggtcgg cgaaaaaataaaaataaaagtagaatttcacctataaaatatcctaaaaa gcaacaaaaactgctacatcttgacaaaaatgcgaaatagaaaataaaaa ggcaCGAAAAggtcgaattcatggataaaatgaaaaactgaacataaatt tttcaatttttattttcatttcgatttttggaatttcagggtcggtcggg tccgtaaaacaactaatcaaattgttCTCGCCTGATAGACTTTCACCAGT TTTAGTAGTTTTAGTACCGACCACTGATATAGAACCTCTCTACCTCTTAT TGTTTACATTTGAATTGTTGTTTGGTTTATTTTTTACGAAAGGAAAAAGT AAGATGGTTTTTGGTTTGAATTCTAATTCATAAGCTACATGTCACCATAA AAGCTGTTTACTAAAAGGAAGGTCCTTTGAGAATTTAGACTATAAAAGCA ATAGAGAAAATGAGAAATCTATTTTGAATTATTTCCAACTTTTATCAGAA ATATAACTTACTGGAGTTACATAGAATTGAGAGACAAATTAATGTAGGGG AGACTcccttaacttttttttctaatcttgttTTTTATAAACCTGTGCCT TGAGATTCTCGGtttgctttttggacctaccccggtgggctgtaggtcct ataaattaacctttgtccgtccgtccgttagttaccagcttttctcgaga ttggctcattagttttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtagcaatgcccacc atcaagcatgtttcaattttcaataaaattgatttttgaagccggaactt tctaaaaatcgccggaacagcccattttcgccggaaaactgttatttctt gaatttcttgagctgtactttatattttttcatgaaattgtgcacactga tgcaaaatgtcgatacctaaattgtgacggagcccgattttcgaaaaaaa ttcaattccggccgaaaatggcggaaatatgccggaaaaactggtttttc ggcattttctcgagatttcatcattaactttttcagattttttgctcaaa gatgcgtattaacaatgcccaaaacatggcctagtccgattcttgagaaa aaatattttccggccgaaaatgccggaaatatgccggaaatcgccgtttt tctggattttcattggacttttcccatataattggttattttttcattct aaaacattatcaatagcaatgcccaccatcaagcatgtttcaatttttaa taaaattgatttttgaagccgggttttctaaaaatcgccggaacagccca TAATCGCCGGAAtaacaggttttttttaatttctcgagctgtaccttata ttttttcatgaaattttgcacactggtgCGAAATggtaatacctaaaatg tgacggagcctgattattgagaaaaaaaactttccggccaaaaatgccgg aaatacgccggaaaaaatagttttttggcatttcctcgagatttcattat cagttttttctgaatttttgcttaaagacgTAAATTAGACGTCTAAAATA TGACCGAGTCCGGCGGTTTTAGAGNTAATTCAATTCctgctgaaaatgcc ggaaatatgctggaaaaactgtttttttggcattttctcgagattttatc ataagtttttttctgactttttgttcaaagatgcgtattaacaatgccca aaacatggccgaatccgatttttgagaaaatcttttttccggtggaaaat gcctgaaatatgctggaaatcgccgtttttctagattttcattggacttt ttcctttttccgttgtttttttcattcaaaaacattattaatagcaatgc ccaccatcaagcatgtttcatttttcaatgaaaaatttatttttgaagcc ggaactattttaaaagtcgccggaacaacctattttcgccggaaagacag tatttcttgaatttctcgagctgtactttaNNagccgaaaatgccggaaa tatgtcggaaaaatcggttttttgatattttctcgaattttcatttctag ttttttccgatttttttgcagaaagatgcgtctttgcaatgctaaaaaca tggccgagttcgatttttgagaaaaaagtttttccggttgaaaatgccgg aaatcaccgtttagtttacttatatttctatgcttttcacacaaaaacat tatccataacaatgctcaccatcaagcatgattcaattgtcaataaaact gatttttgcgaccagaacttcctatttattatttccctacaaccctacaa cccttccctctccccccatcaacaatcaatgatgaatttattgtgttgtg ttttttcgctaaacgctatattttctgactgatttttttcatttttcttt tcgcattgctatctaacttttatCATCAGGtaaggtaggtccattcagca tattgcttgttGTTCTCGAATATGCAATATTTAGCGTCTGATTATCTAAC ATGTtctattgggccattccattttataaccatacaggggtggatgaaca tttccaggggatagCCTGAGAACAATTTCCAAGAGGTTTAAATAAGTGTT TTTTCGTGTTTCtagggtaaaaagttattcttaaactttccagggggtaa acgaCAAATATTAGTTCGCCCAACCTCACTTTAAgtcatgaaaataattt tttccaggctcttttttgcaaattttgctattttccagggggtataaaCA CATTTCAAAGAAATGcgttttgactttgatttctttttaaaatactgAAG GATTTGTGAACATAAATTGCATTTGTCTAATCCAGGTCACGAATGTATGA ATATTGACATTCTAGTTCAATTGTTATTTCTTTCCTTCTTAGAAATATCT AAAAACTACCTGGGTGATCTTTAGTTCTTTTCAACAAGATATCAAACGCT CACCGTTCACCGTCTTGTGACGTTTTACTTTCATATATATTTAGTGAAGT ATCAAATTATCCTGAGGGTAATTCCTTGATAATCTATGTTATTAGTGTTT GTAGTATATGTTCATAAGTGCACTTGTGATCTTTTCaaataaaggaaaaa taacataaaaaatCCCTTGATAATGACCTGGTTCGTTTTTTAAAGTTCAA CTTGTTACATCacacttttttcaaatctttcacGGGGGATTTCCCGAGGG TTTATTAGGCCGTATTGGGAGAAAAAAAGATTGGAAAGTTAGGATATTGA GGGAAAATGTGCAAAGGATCTTGTAACTGTCATATATTTATCTCTTATCT GTACGAAACAATATTAAAAGGTTGGGACCAAATTTATTAAGACTAAATCG agaattttgacctttttacGAAACTCAATGTATGTTTTTTTNTATGTATC TCTTATCTGTATGAATAATAATATCTGTATAAAGAGGGTGGGACCAAATT TATTAAGACTAAATTTCGAGAGTGAGAGACTAAACCTACCCAAAAAACGC ATAGGCCTCATAGCTAACTATGAGGATCACAGCGCATAAATTAACATGTA CTACAAACACTACTAACATAGATTATCCAGGAATTACCCTCAGAATAATT TGATACTTCGCTAAATATATGGTTGATATCTTGTTCAAAAGAACCAAAGA TCACCCAGGTACTTTTTAAATGTCTTCAAGGGATAAACGAAATGAACAGT GGAGCTAGAGTGTCAATTTTGATCCATTCGTGCCTTGCATTAGAAAATCG CGATTTATGTTCACAAATCTTTCAgcatttttgataaaagttgacgaaaa tttcgagaattttaatgtttttacaaaactcaaaatgtttattttttttc aaatttattttgtctGAGAAAGTTTGAATGAAATGATCTTTTCAGCGATT TtttcatgtttaaaaaaatctttaacgaACGTACGTGTCTAATTGCTAAA GTGTTTCTAAGTTCCCTTCTCGATCTAGAATTCCCagaaaaattgatgag taaTCACAATTTTATTCCCTGAATTAGTCGAATTAGGATATAAGTGTCAA TACTGAGACGTAAAACCTTCAAATTGAATATACTGAGAAAGGAAGACAAA CGTTAGAAGGACAAATtcatttgttgatttttgagAGGGaacatttaatt tgaaaaaaatacgtaagtaacttttgatttttgacaGGGTTATACAGAAT CATGAAATCGTTAGgctctgctcatcctctagcgaaagaagtttcttata ggaagtatatctatagaggtctgcgattcagactatgaAATCGTGtgaaa ttttcacatgaaaaatctcatctcattgggctcttccagaaaatgtccgt acatgggggtggaggatatattgtccgggggtagcgaaaaatcatcaaaa tttgccttgtccggggggtaaatttgctctgtctgGAGGTAATTTGgctt gtccggggggccaaaagtcactttgtccggggggtaaatcactgaaaatt gttatatcctccacctcccatattcaaattttttttctggaaaatcccat tttaagaaagattttatttatttagtatTGTCGATGCGTTAAAGATATAC TCGAATAGATAGGATTTCAATCTtattgaagaaaaatttctcaCTTTGCC AAAATTCACTGTCTCATTGTAATTGACCTAGAAGATCTTTGTCGgaggaa aatcttttttcacgATAAGATGTTTATCAATCGTGATGAAACCGTACTTG TCCAGGGTtaaatcacaaaaataaatctcgtacaattttttcattcaagA AAAAAccagaaatcaaaatcaaaatctcgtGCATCTAATTTGATTGATTT AACGCTCGGTATTACCTATGTATTTATGCTTCTAAAAGCATTCCCCACCA ATAAAAAAGTCCCCAATATTTTTCAGCGTAGGGATTTTTCGTATTGACCA GAAACCATTTTTCCGGAAATCACCACGATTGTCCATTTCGATTTTCCCAG TATACACGTGTGCGTGCTGCAAAATTTGATGACGAATCATGACCTATAAA AAAGCGTTTGAAAAGTTTCTAACAGATTAAATACCTCCTATGTATTGAGA GGAAAGGAACTAAGCGCTTATAAGACAGTGAAGATTTGCAACTTTAGAAT AAACAACAAAGTAACGTTTCAAAGTAAGTTCACAAAAATGCTTGATAGTT TAGTTTGATTTTAACAAGAGGCTTGAAAATTAAAGTCGTAGACAGCAAAA CTTTGTTAAATGACAATAGTATCCaggtttacatttttttgaatagaaac aaagtttttaaaattgtaggGAAAAAATCTAGCTTCCCTCTTTCTTGTTT CAGGATTCCTACCAACTACCTCTAACAACACCGAAAGACACAGCAGCAGT GACAGACCAATACTATCAGAATTAACAACTATCAAACCAAACACAATGCC AGAACTACAACATCAACAATCTTTAGAAGCAGTAACAGTTACAACACCTA TTACCAATCAAACTTCGCCACCACAACCAATAACAACAAACAACCAGCAT TCTGAACATGGGATCCAATTTTGTTGGTTTATCTTCAGTCTTCCTCTTGT CAGCTCTTTCCTCTCATTCATTGCTTGTTTAATAGCATACAGAGTGGGTG TAGATGAGAAACGCCTACAACCTTTACCTTTCATCCCATTTATCAGTGAC ATCGGCGACGTCAAACCAGGATCTAGCTTCTTCACATTCTTTCTAATCCT TAGCAGTCTGGTGACTCTCATAATTATCACAGTCAGGTATTACCAAGTAG CTTCCAAAGCTGAAACTGACAAGTCTAGAAACAGCTCCCCAACAGAATTA AGAAGCAACAGGGATAACCCGTTAGAAGAAGCAAGAACCAAACGATCCAT ACAACGATTGAATACAGCAGCTTTGGTATCAAGTTGTATTTTCCTGGTTT GTAAAATTGGTGTGTCATCTTTTCAGTTGAATaactataaaaaaattcat cttggttttgcttgcttttatttttttggtgCAGCCCTTTATACTGTTTT TCAAGTTTGTATCACTTTCAAGATGATTGGTGGTTTAAACGGACTGAAAA AACTCCTTACAGGGGACATGTCTTCGAAGTGTCAAGGCTCTGTCttttta tcaagagttatctGTTCTTTGGCACttatcatcaattttttcattgTTGG TGTTTTTGTTACTGTACCCTCATTGAAAGTTCATAATCGTGGTGGAGCCA ATGTGGGTCAAAGTGCTGAATGGGCTTTCGctggattcaaattatttttc ttctcGACATTTTCGTATGAATTCTGGAAAATTCGTTTCACGTTTCTAAT GAAGTTTGATGAGATTGAGAAAACGAAAACCGAAAGTTTCCCGATCAAAA ATTGTGACACTACCGATGGGCTGCCATCGCAAGTATCATACAGCAAACTG CAATGATCGTGACATTTGTATTGTATAGGCTTAACTCGCCATTTTGATTA AGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000280XLOC_000280Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000432-exon-sc0000002-1491911889:586753..586914TCONS_00000432-exon-sc0000002-1491911889:586753..586914Clytia hemisphaericaexon
TCONS_00000432-exon-sc0000002-1510915933:586753..586914TCONS_00000432-exon-sc0000002-1510915933:586753..586914Clytia hemisphaericaexon
TCONS_00000432-exon-sc0000002-1575043694:586753..586914TCONS_00000432-exon-sc0000002-1575043694:586753..586914Clytia hemisphaericaexon
TCONS_00000432-exon-sc0000002-1491911889:593406..594556TCONS_00000432-exon-sc0000002-1491911889:593406..594556Clytia hemisphaericaexon
TCONS_00000432-exon-sc0000002-1510915933:593406..594556TCONS_00000432-exon-sc0000002-1510915933:593406..594556Clytia hemisphaericaexon
TCONS_00000432-exon-sc0000002-1575043694:593406..594556TCONS_00000432-exon-sc0000002-1575043694:593406..594556Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:586753..594556 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.289221 0.219361 0 0 1.7085 0.45008 1.629 2.02258 0.35591 2.09097 0.683712 1.60487 2.62554 1.01727 0.634944 0.309423 0.390589 1.3008 1.16013 0.293483 1.36606 0.909308 0.300848 1.30022 6.80194 5.66587 2.11108 1.50805 2.71077 1.63254
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000432 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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