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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000432 ID=TCONS_00000432|Name=TCONS_00000432|organism=Clytia hemisphaerica|type=transcript|length=1313bp
aaaaaatgttataattatAATGGATGGAAAAAGGACTTGGCCTGATGTGA
TTGGGATGAGCAAAAATTAACCTTTTGACCTTGTATTACCATTTGAGATT
GAAGATCCTTAATGTATTGAATTGGTTTTGAAGTAATGGATATGAAAACT
TCATATTTTTCAGATTCCTACCAACTACCTCTAACAACACCGAAAGACAC
AGCAGCAGTGACAGACCAATACTATCAGAATTAACAACTATCAAACCAAA
CACAATGCCAGAACTACAACATCAACAATCTTTAGAAGCAGTAACAGTTA
CAACACCTATTACCAATCAAACTTCGCCACCACAACCAATAACAACAAAC
AACCAGCATTCTGAACATGGGATCCAATTTTGTTGGTTTATCTTCAGTCT
TCCTCTTGTCAGCTCTTTCCTCTCATTCATTGCTTGTTTAATAGCATACA
GAGTGGGTGTAGATGAGAAACGCCTACAACCTTTACCTTTCATCCCATTT
ATCAGTGACATCGGCGACGTCAAACCAGGATCTAGCTTCTTCACATTCTT
TCTAATCCTTAGCAGTCTGGTGACTCTCATAATTATCACAGTCAGGTATT
ACCAAGTAGCTTCCAAAGCTGAAACTGACAAGTCTAGAAACAGCTCCCCA
ACAGAATTAAGAAGCAACAGGGATAACCCGTTAGAAGAAGCAAGAACCAA
ACGATCCATACAACGATTGAATACAGCAGCTTTGGTATCAAGTTGTATTT
TCCTGGTTTGTAAAATTGGTGTGTCATCTTTTCAGTTGAATaactataaa
aaaattcatcttggttttgcttgcttttatttttttggtgCAGCCCTTTA
TACTGTTTTTCAAGTTTGTATCACTTTCAAGATGATTGGTGGTTTAAACG
GACTGAAAAAACTCCTTACAGGGGACATGTCTTCGAAGTGTCAAGGCTCT
GTCtttttatcaagagttatctGTTCTTTGGCACttatcatcaatttttt
cattgTTGGTGTTTTTGTTACTGTACCCTCATTGAAAGTTCATAATCGTG
GTGGAGCCAATGTGGGTCAAAGTGCTGAATGGGCTTTCGctggattcaaa
ttatttttcttctcGACATTTTCGTATGAATTCTGGAAAATTCGTTTCAC
GTTTCTAATGAAGTTTGATGAGATTGAGAAAACGAAAACCGAAAGTTTCC
CGATCAAAAATTGTGACACTACCGATGGGCTGCCATCGCAAGTATCATAC
AGCAAACTGCAATGATCGTGACATTTGTATTGTATAGGCTTAACTCGCCA
TTTTGATTAAGTC Run BLAST on NCBI transcript from alignment at sc0000002:586753..594556+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000432 ID=TCONS_00000432|Name=TCONS_00000432|organism=Clytia hemisphaerica|type=transcript|length=7804bp|location=Sequence derived from alignment at sc0000002:586753..594556+ (Clytia hemisphaerica)
aaaaaatgttataattatAATGGATGGAAAAAGGACTTGGCCTGATGTGA
TTGGGATGAGCAAAAATTAACCTTTTGACCTTGTATTACCATTTGAGATT
GAAGATCCTTAATGTATTGAATTGGTTTTGAAGTAATGGATATGAAAACT
TCATATTTTTCAGTAAGTTTAACTTTATAttatagaaaattattttagag
AGTCAAAAGGTCTTATGAAATGGTCTAATATTTTACCGTAATTaactatt
tttcaatttattgagTTTACAGAGGTATTGAATAGTTTAACCTAGTCTTA
CTTTTCACATAATTTTGTTAATAGTTTAGTATTAGTCTAggtcaatttaa
tttgttgttttacgggccaagctacccaaaaagagGGGTcagtcggtcgg
cgaaaaaataaaaataaaagtagaatttcacctataaaatatcctaaaaa
gcaacaaaaactgctacatcttgacaaaaatgcgaaatagaaaataaaaa
ggcaCGAAAAggtcgaattcatggataaaatgaaaaactgaacataaatt
tttcaatttttattttcatttcgatttttggaatttcagggtcggtcggg
tccgtaaaacaactaatcaaattgttCTCGCCTGATAGACTTTCACCAGT
TTTAGTAGTTTTAGTACCGACCACTGATATAGAACCTCTCTACCTCTTAT
TGTTTACATTTGAATTGTTGTTTGGTTTATTTTTTACGAAAGGAAAAAGT
AAGATGGTTTTTGGTTTGAATTCTAATTCATAAGCTACATGTCACCATAA
AAGCTGTTTACTAAAAGGAAGGTCCTTTGAGAATTTAGACTATAAAAGCA
ATAGAGAAAATGAGAAATCTATTTTGAATTATTTCCAACTTTTATCAGAA
ATATAACTTACTGGAGTTACATAGAATTGAGAGACAAATTAATGTAGGGG
AGACTcccttaacttttttttctaatcttgttTTTTATAAACCTGTGCCT
TGAGATTCTCGGtttgctttttggacctaccccggtgggctgtaggtcct
ataaattaacctttgtccgtccgtccgttagttaccagcttttctcgaga
ttggctcattagttttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtagcaatgcccacc
atcaagcatgtttcaattttcaataaaattgatttttgaagccggaactt
tctaaaaatcgccggaacagcccattttcgccggaaaactgttatttctt
gaatttcttgagctgtactttatattttttcatgaaattgtgcacactga
tgcaaaatgtcgatacctaaattgtgacggagcccgattttcgaaaaaaa
ttcaattccggccgaaaatggcggaaatatgccggaaaaactggtttttc
ggcattttctcgagatttcatcattaactttttcagattttttgctcaaa
gatgcgtattaacaatgcccaaaacatggcctagtccgattcttgagaaa
aaatattttccggccgaaaatgccggaaatatgccggaaatcgccgtttt
tctggattttcattggacttttcccatataattggttattttttcattct
aaaacattatcaatagcaatgcccaccatcaagcatgtttcaatttttaa
taaaattgatttttgaagccgggttttctaaaaatcgccggaacagccca
TAATCGCCGGAAtaacaggttttttttaatttctcgagctgtaccttata
ttttttcatgaaattttgcacactggtgCGAAATggtaatacctaaaatg
tgacggagcctgattattgagaaaaaaaactttccggccaaaaatgccgg
aaatacgccggaaaaaatagttttttggcatttcctcgagatttcattat
cagttttttctgaatttttgcttaaagacgTAAATTAGACGTCTAAAATA
TGACCGAGTCCGGCGGTTTTAGAGNTAATTCAATTCctgctgaaaatgcc
ggaaatatgctggaaaaactgtttttttggcattttctcgagattttatc
ataagtttttttctgactttttgttcaaagatgcgtattaacaatgccca
aaacatggccgaatccgatttttgagaaaatcttttttccggtggaaaat
gcctgaaatatgctggaaatcgccgtttttctagattttcattggacttt
ttcctttttccgttgtttttttcattcaaaaacattattaatagcaatgc
ccaccatcaagcatgtttcatttttcaatgaaaaatttatttttgaagcc
ggaactattttaaaagtcgccggaacaacctattttcgccggaaagacag
tatttcttgaatttctcgagctgtactttaNNagccgaaaatgccggaaa
tatgtcggaaaaatcggttttttgatattttctcgaattttcatttctag
ttttttccgatttttttgcagaaagatgcgtctttgcaatgctaaaaaca
tggccgagttcgatttttgagaaaaaagtttttccggttgaaaatgccgg
aaatcaccgtttagtttacttatatttctatgcttttcacacaaaaacat
tatccataacaatgctcaccatcaagcatgattcaattgtcaataaaact
gatttttgcgaccagaacttcctatttattatttccctacaaccctacaa
cccttccctctccccccatcaacaatcaatgatgaatttattgtgttgtg
ttttttcgctaaacgctatattttctgactgatttttttcatttttcttt
tcgcattgctatctaacttttatCATCAGGtaaggtaggtccattcagca
tattgcttgttGTTCTCGAATATGCAATATTTAGCGTCTGATTATCTAAC
ATGTtctattgggccattccattttataaccatacaggggtggatgaaca
tttccaggggatagCCTGAGAACAATTTCCAAGAGGTTTAAATAAGTGTT
TTTTCGTGTTTCtagggtaaaaagttattcttaaactttccagggggtaa
acgaCAAATATTAGTTCGCCCAACCTCACTTTAAgtcatgaaaataattt
tttccaggctcttttttgcaaattttgctattttccagggggtataaaCA
CATTTCAAAGAAATGcgttttgactttgatttctttttaaaatactgAAG
GATTTGTGAACATAAATTGCATTTGTCTAATCCAGGTCACGAATGTATGA
ATATTGACATTCTAGTTCAATTGTTATTTCTTTCCTTCTTAGAAATATCT
AAAAACTACCTGGGTGATCTTTAGTTCTTTTCAACAAGATATCAAACGCT
CACCGTTCACCGTCTTGTGACGTTTTACTTTCATATATATTTAGTGAAGT
ATCAAATTATCCTGAGGGTAATTCCTTGATAATCTATGTTATTAGTGTTT
GTAGTATATGTTCATAAGTGCACTTGTGATCTTTTCaaataaaggaaaaa
taacataaaaaatCCCTTGATAATGACCTGGTTCGTTTTTTAAAGTTCAA
CTTGTTACATCacacttttttcaaatctttcacGGGGGATTTCCCGAGGG
TTTATTAGGCCGTATTGGGAGAAAAAAAGATTGGAAAGTTAGGATATTGA
GGGAAAATGTGCAAAGGATCTTGTAACTGTCATATATTTATCTCTTATCT
GTACGAAACAATATTAAAAGGTTGGGACCAAATTTATTAAGACTAAATCG
agaattttgacctttttacGAAACTCAATGTATGTTTTTTTNTATGTATC
TCTTATCTGTATGAATAATAATATCTGTATAAAGAGGGTGGGACCAAATT
TATTAAGACTAAATTTCGAGAGTGAGAGACTAAACCTACCCAAAAAACGC
ATAGGCCTCATAGCTAACTATGAGGATCACAGCGCATAAATTAACATGTA
CTACAAACACTACTAACATAGATTATCCAGGAATTACCCTCAGAATAATT
TGATACTTCGCTAAATATATGGTTGATATCTTGTTCAAAAGAACCAAAGA
TCACCCAGGTACTTTTTAAATGTCTTCAAGGGATAAACGAAATGAACAGT
GGAGCTAGAGTGTCAATTTTGATCCATTCGTGCCTTGCATTAGAAAATCG
CGATTTATGTTCACAAATCTTTCAgcatttttgataaaagttgacgaaaa
tttcgagaattttaatgtttttacaaaactcaaaatgtttattttttttc
aaatttattttgtctGAGAAAGTTTGAATGAAATGATCTTTTCAGCGATT
TtttcatgtttaaaaaaatctttaacgaACGTACGTGTCTAATTGCTAAA
GTGTTTCTAAGTTCCCTTCTCGATCTAGAATTCCCagaaaaattgatgag
taaTCACAATTTTATTCCCTGAATTAGTCGAATTAGGATATAAGTGTCAA
TACTGAGACGTAAAACCTTCAAATTGAATATACTGAGAAAGGAAGACAAA
CGTTAGAAGGACAAATtcatttgttgatttttgagAGGGaacatttaatt
tgaaaaaaatacgtaagtaacttttgatttttgacaGGGTTATACAGAAT
CATGAAATCGTTAGgctctgctcatcctctagcgaaagaagtttcttata
ggaagtatatctatagaggtctgcgattcagactatgaAATCGTGtgaaa
ttttcacatgaaaaatctcatctcattgggctcttccagaaaatgtccgt
acatgggggtggaggatatattgtccgggggtagcgaaaaatcatcaaaa
tttgccttgtccggggggtaaatttgctctgtctgGAGGTAATTTGgctt
gtccggggggccaaaagtcactttgtccggggggtaaatcactgaaaatt
gttatatcctccacctcccatattcaaattttttttctggaaaatcccat
tttaagaaagattttatttatttagtatTGTCGATGCGTTAAAGATATAC
TCGAATAGATAGGATTTCAATCTtattgaagaaaaatttctcaCTTTGCC
AAAATTCACTGTCTCATTGTAATTGACCTAGAAGATCTTTGTCGgaggaa
aatcttttttcacgATAAGATGTTTATCAATCGTGATGAAACCGTACTTG
TCCAGGGTtaaatcacaaaaataaatctcgtacaattttttcattcaagA
AAAAAccagaaatcaaaatcaaaatctcgtGCATCTAATTTGATTGATTT
AACGCTCGGTATTACCTATGTATTTATGCTTCTAAAAGCATTCCCCACCA
ATAAAAAAGTCCCCAATATTTTTCAGCGTAGGGATTTTTCGTATTGACCA
GAAACCATTTTTCCGGAAATCACCACGATTGTCCATTTCGATTTTCCCAG
TATACACGTGTGCGTGCTGCAAAATTTGATGACGAATCATGACCTATAAA
AAAGCGTTTGAAAAGTTTCTAACAGATTAAATACCTCCTATGTATTGAGA
GGAAAGGAACTAAGCGCTTATAAGACAGTGAAGATTTGCAACTTTAGAAT
AAACAACAAAGTAACGTTTCAAAGTAAGTTCACAAAAATGCTTGATAGTT
TAGTTTGATTTTAACAAGAGGCTTGAAAATTAAAGTCGTAGACAGCAAAA
CTTTGTTAAATGACAATAGTATCCaggtttacatttttttgaatagaaac
aaagtttttaaaattgtaggGAAAAAATCTAGCTTCCCTCTTTCTTGTTT
CAGGATTCCTACCAACTACCTCTAACAACACCGAAAGACACAGCAGCAGT
GACAGACCAATACTATCAGAATTAACAACTATCAAACCAAACACAATGCC
AGAACTACAACATCAACAATCTTTAGAAGCAGTAACAGTTACAACACCTA
TTACCAATCAAACTTCGCCACCACAACCAATAACAACAAACAACCAGCAT
TCTGAACATGGGATCCAATTTTGTTGGTTTATCTTCAGTCTTCCTCTTGT
CAGCTCTTTCCTCTCATTCATTGCTTGTTTAATAGCATACAGAGTGGGTG
TAGATGAGAAACGCCTACAACCTTTACCTTTCATCCCATTTATCAGTGAC
ATCGGCGACGTCAAACCAGGATCTAGCTTCTTCACATTCTTTCTAATCCT
TAGCAGTCTGGTGACTCTCATAATTATCACAGTCAGGTATTACCAAGTAG
CTTCCAAAGCTGAAACTGACAAGTCTAGAAACAGCTCCCCAACAGAATTA
AGAAGCAACAGGGATAACCCGTTAGAAGAAGCAAGAACCAAACGATCCAT
ACAACGATTGAATACAGCAGCTTTGGTATCAAGTTGTATTTTCCTGGTTT
GTAAAATTGGTGTGTCATCTTTTCAGTTGAATaactataaaaaaattcat
cttggttttgcttgcttttatttttttggtgCAGCCCTTTATACTGTTTT
TCAAGTTTGTATCACTTTCAAGATGATTGGTGGTTTAAACGGACTGAAAA
AACTCCTTACAGGGGACATGTCTTCGAAGTGTCAAGGCTCTGTCttttta
tcaagagttatctGTTCTTTGGCACttatcatcaattttttcattgTTGG
TGTTTTTGTTACTGTACCCTCATTGAAAGTTCATAATCGTGGTGGAGCCA
ATGTGGGTCAAAGTGCTGAATGGGCTTTCGctggattcaaattatttttc
ttctcGACATTTTCGTATGAATTCTGGAAAATTCGTTTCACGTTTCTAAT
GAAGTTTGATGAGATTGAGAAAACGAAAACCGAAAGTTTCCCGATCAAAA
ATTGTGACACTACCGATGGGCTGCCATCGCAAGTATCATACAGCAAACTG
CAATGATCGTGACATTTGTATTGTATAGGCTTAACTCGCCATTTTGATTA
AGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000432-exon-sc0000002-1491911889:586753..586914 | TCONS_00000432-exon-sc0000002-1491911889:586753..586914 | Clytia hemisphaerica | exon |
| TCONS_00000432-exon-sc0000002-1510915933:586753..586914 | TCONS_00000432-exon-sc0000002-1510915933:586753..586914 | Clytia hemisphaerica | exon |
| TCONS_00000432-exon-sc0000002-1575043694:586753..586914 | TCONS_00000432-exon-sc0000002-1575043694:586753..586914 | Clytia hemisphaerica | exon |
| TCONS_00000432-exon-sc0000002-1491911889:593406..594556 | TCONS_00000432-exon-sc0000002-1491911889:593406..594556 | Clytia hemisphaerica | exon |
| TCONS_00000432-exon-sc0000002-1510915933:593406..594556 | TCONS_00000432-exon-sc0000002-1510915933:593406..594556 | Clytia hemisphaerica | exon |
| TCONS_00000432-exon-sc0000002-1575043694:593406..594556 | TCONS_00000432-exon-sc0000002-1575043694:593406..594556 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:586753..594556 + |
Blast
The following BLAST results are available for this feature:
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