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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000434 ID=TCONS_00000434|Name=TCONS_00000434|organism=Clytia hemisphaerica|type=transcript|length=1435bp
GACAAATtcatttgttgatttttgagAGGGaacatttaatttgaaaaaaa
tactGAATGGAAGACTTCAAAAACTgagataaaacaaaagaaatcgaaCT
TCGTGAtaacaagaaaaacaaaatggctgattcGAAAATACAAGCCGAAG
AAGAAACAAGAACAACATTAAATGCACCAAATCATGCCAACAACAGAAAA
AGCTACCAAATCAATCTGCGTTGGATTATCTTCAGCTTACCTATCATCAG
CTCTCTCTGCTCCTTCATAGCTTGTCTGATGGCGTACATTATCGGCGTGA
ATAGTGGAACATTGAAACCGTTACCTTTTATACCTTACATCAGCGATACT
GGAGATTTTAAACCGAATTCAAGTATATTTACTCTTTTCTTGATTTTAAG
CAGCTTNAGGAGACTTTAAACCGAATTCAAGTATATTTACTCTATTCTTG
ATTTTAAGCAGCTTTGCAACGCTGGTTATTGCTATAGTACGTTTTTACCA
AATTGCAGCCGAAGCTAGATGCTCTATAGCGAACAGAGCAGCTTTAGTAT
CTGCATTTCTATTTTTGCTTGGTAAAATCGTTGTTTCGTCGTTTCAACTT
TCATCAAATATTTTCGTCCATTTTGCAGCCGCTGGGTTATATTTCCTTGG
TGCAACGATCTACACGTTATTACAATGTTACATTACTTATCGATTCCTTG
GTGATTCAATTAATAAAGAAAGATTCGTCAAAGATTCTACTTGGAGACGA
GGATGTATTGTTTATTTGATTCGTGTAGTGTGTTGTGTCGGTCTAGTAAT
CAATTTAATCATATTTGGCGTATTTGCAACAATCCCTTCTTTAGAGATTC
ATAACAGAGGTGGAGCCAATGTGGCGCAAGCTACAGAATGGGCGTTGGCA
GCATTTAAAATTATATTCCTATCAACATTCACTTATGACTTCTGGAACAT
CGAGTTCAAATTTGGAATGGAATTCAAAACAATCCAACCAAAAGATTTTC
CTTCACCAGAAACTCAAGTTTCAATAGATATCGAGGACAATATTAGACTT
GCTAGATATACAAGATTTGATTCGAAGGAGCcaaataaagtgaaaattgA
GTTCCATACATGAATAAAACATGACGTTAAATTTCAATCGAGCTAAAAAC
CGTAATTCACGAAGCCAAATTGAACATTGTTTTTCCAAAAAGATATGCCT
TAATCTCATTTACCATGGTTGTAGTCTAAATAATCGATTGAAAGTGAAAT
ATAGCTACAATCCTTCGCAGGGGGATTtcttgtctcaaatattttgtcca
tgattgtacatATAATTCAAAGTttagatttttaaggaaataaaaaataa
tatttcaggACACGACTaacaatatttttgatttatataatttgaaatta
ttttcaaaaagattacGGTTATCCCTTCGTGTATT Run BLAST on NCBI transcript from alignment at sc0000002:592162..598200+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000434 ID=TCONS_00000434|Name=TCONS_00000434|organism=Clytia hemisphaerica|type=transcript|length=6039bp|location=Sequence derived from alignment at sc0000002:592162..598200+ (Clytia hemisphaerica)
GACAAATtcatttgttgatttttgagAGGGaacatttaatttgaaaaaaa
tacgtaagtaacttttgatttttgacaGGGTTATACAGAATCATGAAATC
GTTAGgctctgctcatcctctagcgaaagaagtttcttataggaagtata
tctatagaggtctgcgattcagactatgaAATCGTGtgaaattttcacat
gaaaaatctcatctcattgggctcttccagaaaatgtccgtacatggggg
tggaggatatattgtccgggggtagcgaaaaatcatcaaaatttgccttg
tccggggggtaaatttgctctgtctgGAGGTAATTTGgcttgtccggggg
gccaaaagtcactttgtccggggggtaaatcactgaaaattgttatatcc
tccacctcccatattcaaattttttttctggaaaatcccattttaagaaa
gattttatttatttagtatTGTCGATGCGTTAAAGATATACTCGAATAGA
TAGGATTTCAATCTtattgaagaaaaatttctcaCTTTGCCAAAATTCAC
TGTCTCATTGTAATTGACCTAGAAGATCTTTGTCGgaggaaaatcttttt
tcacgATAAGATGTTTATCAATCGTGATGAAACCGTACTTGTCCAGGGTt
aaatcacaaaaataaatctcgtacaattttttcattcaagAAAAAAccag
aaatcaaaatcaaaatctcgtGCATCTAATTTGATTGATTTAACGCTCGG
TATTACCTATGTATTTATGCTTCTAAAAGCATTCCCCACCAATAAAAAAG
TCCCCAATATTTTTCAGCGTAGGGATTTTTCGTATTGACCAGAAACCATT
TTTCCGGAAATCACCACGATTGTCCATTTCGATTTTCCCAGTATACACGT
GTGCGTGCTGCAAAATTTGATGACGAATCATGACCTATAAAAAAGCGTTT
GAAAAGTTTCTAACAGATTAAATACCTCCTATGTATTGAGAGGAAAGGAA
CTAAGCGCTTATAAGACAGTGAAGATTTGCAACTTTAGAATAAACAACAA
AGTAACGTTTCAAAGTAAGTTCACAAAAATGCTTGATAGTTTAGTTTGAT
TTTAACAAGAGGCTTGAAAATTAAAGTCGTAGACAGCAAAACTTTGTTAA
ATGACAATAGTATCCaggtttacatttttttgaatagaaacaaagttttt
aaaattgtaggGAAAAAATCTAGCTTCCCTCTTTCTTGTTTCAGGATTCC
TACCAACTACCTCTAACAACACCGAAAGACACAGCAGCAGTGACAGACCA
ATACTATCAGAATTAACAACTATCAAACCAAACACAATGCCAGAACTACA
ACATCAACAATCTTTAGAAGCAGTAACAGTTACAACACCTATTACCAATC
AAACTTCGCCACCACAACCAATAACAACAAACAACCAGCATTCTGAACAT
GGGATCCAATTTTGTTGGTTTATCTTCAGTCTTCCTCTTGTCAGCTCTTT
CCTCTCATTCATTGCTTGTTTAATAGCATACAGAGTGGGTGTAGATGAGA
AACGCCTACAACCTTTACCTTTCATCCCATTTATCAGTGACATCGGCGAC
GTCAAACCAGGATCTAGCTTCTTCACATTCTTTCTAATCCTTAGCAGTCT
GGTGACTCTCATAATTATCACAGTCAGGTATTACCAAGTAGCTTCCAAAG
CTGAAACTGACAAGTCTAGAAACAGCTCCCCAACAGAATTAAGAAGCAAC
AGGGATAACCCGTTAGAAGAAGCAAGAACCAAACGATCCATACAACGATT
GAATACAGCAGCTTTGGTATCAAGTTGTATTTTCCTGGTTTGTAAAATTG
GTGTGTCATCTTTTCAGTTGAATaactataaaaaaattcatcttggtttt
gcttgcttttatttttttggtgCAGCCCTTTATACTGTTTTTCAAGTTTG
TATCACTTTCAAGATGATTGGTGGTTTAAACGGACTGAAAAAACTCCTTA
CAGGGGACATGTCTTCGAAGTGTCAAGGCTCTGTCtttttatcaagagtt
atctGTTCTTTGGCACttatcatcaattttttcattgTTGGTGTTTTTGT
TACTGTACCCTCATTGAAAGTTCATAATCGTGGTGGAGCCAATGTGGGTC
AAAGTGCTGAATGGGCTTTCGctggattcaaattatttttcttctcGACA
TTTTCGTATGAATTCTGGAAAATTCGTTTCACGTTTCTAATGAAGTTTGA
TGAGATTGAGAAAACGAAAACCGAAAGTTTCCCGATCAAAAATTGTGACA
CTACCGATGGGCTGCCATCGCAAGTATCATACAGCAAACTGCAATGATCG
TGACATTTGTATTGTATAGGCTTAACTCGCCATTTTGATTAAGTCTGATA
TGTGATACATAAAGTTCTTTCATAAAGATTTGCGAGTTGAAGAGCTAGAT
GTCAATGAACGTTAAAAATTAAATAACTTTAGACTGAAAATTTGACTTCT
ACGATTTTAGTCCCTTGTAGAACGCAAACTGTGATTCAAAAAATTCACCT
TGTATCTTGTATTTATAGAGACGACGAAGGTTGGGGGCCATCTTGCATAA
GTTCATTTTTAAtttatcaagatttttaaacaaatttgaaTATCAGATCA
GAGTTTTAATAGTGATCTAAATTAAATAATGTTATTGTAAATACGTTCCT
TGATTTCATTTAAGTATCAAAAGTTTTACctatttttacagtttttttta
caaaatgatatattttatgttttccaACTCCATGTccaatatatttattt
ttcttgatttttaaagtaaagaaatttttaaagtacagtatttttgaatt
ttgagtgAAATTCAGCAGAGACAATATCGAAGACATTTGCAccatcagat
ggtttgagatatttggccttAGTACCTTCTACGGTCCTGAGTAAAACCTC
CAAGTATTTTGGCCTAACTATCGAGATAACACAATTTGAAATTACTGAAA
ATGAGTTCTTACACGGTTAAACTTTCGTTGTAATTCTtactaaaagtaaa
aatatctcaaaccatctgattatccctttaaatggTAGGCGTGATACAAT
TTTGACCGCTCTTTGGTGACCACTTCTTGATAACCTTTCTCGGAATCCTA
AAAGGGTGAATTAAAGGAACTGGGTTCGAGTTTTTAAGAGAGGTACTATT
CAACAGTTGTCAATTCTAATTCCCCCCCTCAGAGCAATCTTTCAATTTCG
TAATTCTGTAACTTTCAGACGTTaaaagttaagtttattcttttAATGTA
AatagtttttgtttattttatacgtgacaaaacaaacaaaagaagTAAAA
ACGTTTTCGACTGTTCAAAAATGACACACGCGAGTTATCTTTATTCCCTA
CGTATTTTTCCTCTAAAATGAAACGTGATCTTTAGGCCTCAGGCCTTCTA
GAAAACTCCTAATGAACTCTTGAAAGAAAACCCATTAATTTAAGTCTCGC
CTAATTGAAATTACAAAGGTCTATCTAAAACCTGGTTTATCCCAGGTGCT
ATCGACAGTCGATGTGTGTTTTGATCTAGAATTTAGAGGACCTTTTgctt
taaaaacaattttacacccctgtctcacagccccgaccGAGCTATTttcc
tcaatggggataaaaattctaaattttccagtggggctggggtcccagcg
ggtctgtgagacaggggtgtagtaTATTTTGATTAATACATAAGTTTTGA
CCATGAGTCAGAACTCTTTGAGACAAATGCTCCCTCTAAAGACACGAAAG
GTTAATGTCAGACGCACATTAAAGAGAAGTAATCCAATACTTCTCAAATA
CTGTACACGTTTgcttttcataagaacatccaaaatttTTGAAGCCTTGG
GATGTTcccaactttttgagttttaagcctaaaaatgttcttaacatgtt
cttattttcaccattttgtgagtatttttgcctattttcataagaaattg
gatgttttagagtccacaaagccttaaaatgttcttaacttgttcttaat
aatttggtcatcgaagccttatgttcttacatagtttgttcctATAAACA
ACCTATACTTTTCAAATAATGTAGATTCGCATTATTGACACATATAAATA
GATGATTGACACAAGAGGTATTCAGATTTCCTTTTACAGAATTCTTTTAC
TGATGTGATGTTGGCTTTCGAGAATCTCTTGTGTCAAGTTTCGTCTACCA
TCACTTTAAAAGTTTTCGGTATCTAAGTCTTGTATGGTCTTGTAATATTT
AAACTTTCATGTCTTTCGTGATTGGGGTTGCCAGTTTAAAGCTGTGGGAC
CACACACCCTGGATTTTATGGGGCAACATATGGGCAACATATATAACTTT
ACAGTTATACacaaattttacacttttttggatttttgatgttttttcta
CTAAAAGGTTGTAACAGTTGGTAACAGGTCTGAGACAGGTGTTACaccct
tgtttttttttaaatggtggTTCtatcatttcatcatggatatcaTTAAC
cttgtcaaatatttttatattatgcgGAGTATCAGAATCCGCTCGGAGCA
TTAAAAGCTTCAAAACTTAGTGTAATAAACTTGAATcttgattttttaac
ctttcagtGAATGGAAGACTTCAAAAACTgagataaaacaaaagaaatcg
aaCTTCGTGAtaacaagaaaaacaaaatggctgattcGAAAATACAAGCC
GAAGAAGAAACAAGAACAACATTAAATGCACCAAATCATGCCAACAACAG
AAAAAGCTACCAAATCAATCTGCGTTGGATTATCTTCAGCTTACCTATCA
TCAGCTCTCTCTGCTCCTTCATAGCTTGTCTGATGGCGTACATTATCGGC
GTGAATAGTGGAACATTGAAACCGTTACCTTTTATACCTTACATCAGCGA
TACTGGAGATTTTAAACCGAATTCAAGTATATTTACTCTTTTCTTGATTT
TAAGCAGCTTNAGGAGACTTTAAACCGAATTCAAGTATATTTACTCTATT
CTTGATTTTAAGCAGCTTTGCAACGCTGGTTATTGCTATAGTACGTTTTT
ACCAAATTGCAGCCGAAGCTAGATGCTCTATAGCGAACAGAGCAGCTTTA
GTATCTGCATTTCTATTTTTGCTTGGTAAAATCGTTGTTTCGTCGTTTCA
ACTTTCATCAAATATTTTCGTCCATTTTGCAGCCGCTGGGTTATATTTCC
TTGGTGCAACGATCTACACGTTATTACAATGTTACATTACTTATCGATTC
CTTGGTGATTCAATTAATAAAGAAAGATTCGTCAAAGATTCTACTTGGAG
ACGAGGATGTATTGTTTATTTGATTCGTGTAGTGTGTTGTGTCGGTCTAG
TAATCAATTTAATCATATTTGGCGTATTTGCAACAATCCCTTCTTTAGAG
ATTCATAACAGAGGTGGAGCCAATGTGGCGCAAGCTACAGAATGGGCGTT
GGCAGCATTTAAAATTATATTCCTATCAACATTCACTTATGACTTCTGGA
ACATCGAGTTCAAATTTGGAATGGAATTCAAAACAATCCAACCAAAAGAT
TTTCCTTCACCAGAAACTCAAGTTTCAATAGATATCGAGGACAATATTAG
ACTTGCTAGATATACAAGATTTGATTCGAAGGAGCcaaataaagtgaaaa
ttgAGTTCCATACATGAATAAAACATGACGTTAAATTTCAATCGAGCTAA
AAACCGTAATTCACGAAGCCAAATTGAACATTGTTTTTCCAAAAAGATAT
GCCTTAATCTCATTTACCATGGTTGTAGTCTAAATAATCGATTGAAAGTG
AAATATAGCTACAATCCTTCGCAGGGGGATTtcttgtctcaaatattttg
tccatgattgtacatATAATTCAAAGTttagatttttaaggaaataaaaa
ataatatttcaggACACGACTaacaatatttttgatttatataatttgaa
attattttcaaaaagattacGGTTATCCCTTCGTGTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000434-exon-sc0000002-1491911889:592162..592214 | TCONS_00000434-exon-sc0000002-1491911889:592162..592214 | Clytia hemisphaerica | exon |
| TCONS_00000434-exon-sc0000002-1510915933:592162..592214 | TCONS_00000434-exon-sc0000002-1510915933:592162..592214 | Clytia hemisphaerica | exon |
| TCONS_00000434-exon-sc0000002-1575043694:592162..592214 | TCONS_00000434-exon-sc0000002-1575043694:592162..592214 | Clytia hemisphaerica | exon |
| TCONS_00000434-exon-sc0000002-1491911889:596819..598200 | TCONS_00000434-exon-sc0000002-1491911889:596819..598200 | Clytia hemisphaerica | exon |
| TCONS_00000434-exon-sc0000002-1510915933:596819..598200 | TCONS_00000434-exon-sc0000002-1510915933:596819..598200 | Clytia hemisphaerica | exon |
| TCONS_00000434-exon-sc0000002-1575043694:596819..598200 | TCONS_00000434-exon-sc0000002-1575043694:596819..598200 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:592162..598200 + |
Blast
The following BLAST results are available for this feature:
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