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TCONS_00000434 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000434
Unique NameTCONS_00000434
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1435

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000434 ID=TCONS_00000434|Name=TCONS_00000434|organism=Clytia hemisphaerica|type=transcript|length=1435bp
GACAAATtcatttgttgatttttgagAGGGaacatttaatttgaaaaaaa
tactGAATGGAAGACTTCAAAAACTgagataaaacaaaagaaatcgaaCT
TCGTGAtaacaagaaaaacaaaatggctgattcGAAAATACAAGCCGAAG
AAGAAACAAGAACAACATTAAATGCACCAAATCATGCCAACAACAGAAAA
AGCTACCAAATCAATCTGCGTTGGATTATCTTCAGCTTACCTATCATCAG
CTCTCTCTGCTCCTTCATAGCTTGTCTGATGGCGTACATTATCGGCGTGA
ATAGTGGAACATTGAAACCGTTACCTTTTATACCTTACATCAGCGATACT
GGAGATTTTAAACCGAATTCAAGTATATTTACTCTTTTCTTGATTTTAAG
CAGCTTNAGGAGACTTTAAACCGAATTCAAGTATATTTACTCTATTCTTG
ATTTTAAGCAGCTTTGCAACGCTGGTTATTGCTATAGTACGTTTTTACCA
AATTGCAGCCGAAGCTAGATGCTCTATAGCGAACAGAGCAGCTTTAGTAT
CTGCATTTCTATTTTTGCTTGGTAAAATCGTTGTTTCGTCGTTTCAACTT
TCATCAAATATTTTCGTCCATTTTGCAGCCGCTGGGTTATATTTCCTTGG
TGCAACGATCTACACGTTATTACAATGTTACATTACTTATCGATTCCTTG
GTGATTCAATTAATAAAGAAAGATTCGTCAAAGATTCTACTTGGAGACGA
GGATGTATTGTTTATTTGATTCGTGTAGTGTGTTGTGTCGGTCTAGTAAT
CAATTTAATCATATTTGGCGTATTTGCAACAATCCCTTCTTTAGAGATTC
ATAACAGAGGTGGAGCCAATGTGGCGCAAGCTACAGAATGGGCGTTGGCA
GCATTTAAAATTATATTCCTATCAACATTCACTTATGACTTCTGGAACAT
CGAGTTCAAATTTGGAATGGAATTCAAAACAATCCAACCAAAAGATTTTC
CTTCACCAGAAACTCAAGTTTCAATAGATATCGAGGACAATATTAGACTT
GCTAGATATACAAGATTTGATTCGAAGGAGCcaaataaagtgaaaattgA
GTTCCATACATGAATAAAACATGACGTTAAATTTCAATCGAGCTAAAAAC
CGTAATTCACGAAGCCAAATTGAACATTGTTTTTCCAAAAAGATATGCCT
TAATCTCATTTACCATGGTTGTAGTCTAAATAATCGATTGAAAGTGAAAT
ATAGCTACAATCCTTCGCAGGGGGATTtcttgtctcaaatattttgtcca
tgattgtacatATAATTCAAAGTttagatttttaaggaaataaaaaataa
tatttcaggACACGACTaacaatatttttgatttatataatttgaaatta
ttttcaaaaagattacGGTTATCCCTTCGTGTATT
Run BLAST on NCBI

transcript from alignment at sc0000002:592162..598200+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000434 ID=TCONS_00000434|Name=TCONS_00000434|organism=Clytia hemisphaerica|type=transcript|length=6039bp|location=Sequence derived from alignment at sc0000002:592162..598200+ (Clytia hemisphaerica)
GACAAATtcatttgttgatttttgagAGGGaacatttaatttgaaaaaaa tacgtaagtaacttttgatttttgacaGGGTTATACAGAATCATGAAATC GTTAGgctctgctcatcctctagcgaaagaagtttcttataggaagtata tctatagaggtctgcgattcagactatgaAATCGTGtgaaattttcacat gaaaaatctcatctcattgggctcttccagaaaatgtccgtacatggggg tggaggatatattgtccgggggtagcgaaaaatcatcaaaatttgccttg tccggggggtaaatttgctctgtctgGAGGTAATTTGgcttgtccggggg gccaaaagtcactttgtccggggggtaaatcactgaaaattgttatatcc tccacctcccatattcaaattttttttctggaaaatcccattttaagaaa gattttatttatttagtatTGTCGATGCGTTAAAGATATACTCGAATAGA TAGGATTTCAATCTtattgaagaaaaatttctcaCTTTGCCAAAATTCAC TGTCTCATTGTAATTGACCTAGAAGATCTTTGTCGgaggaaaatcttttt tcacgATAAGATGTTTATCAATCGTGATGAAACCGTACTTGTCCAGGGTt aaatcacaaaaataaatctcgtacaattttttcattcaagAAAAAAccag aaatcaaaatcaaaatctcgtGCATCTAATTTGATTGATTTAACGCTCGG TATTACCTATGTATTTATGCTTCTAAAAGCATTCCCCACCAATAAAAAAG TCCCCAATATTTTTCAGCGTAGGGATTTTTCGTATTGACCAGAAACCATT TTTCCGGAAATCACCACGATTGTCCATTTCGATTTTCCCAGTATACACGT GTGCGTGCTGCAAAATTTGATGACGAATCATGACCTATAAAAAAGCGTTT GAAAAGTTTCTAACAGATTAAATACCTCCTATGTATTGAGAGGAAAGGAA CTAAGCGCTTATAAGACAGTGAAGATTTGCAACTTTAGAATAAACAACAA AGTAACGTTTCAAAGTAAGTTCACAAAAATGCTTGATAGTTTAGTTTGAT TTTAACAAGAGGCTTGAAAATTAAAGTCGTAGACAGCAAAACTTTGTTAA ATGACAATAGTATCCaggtttacatttttttgaatagaaacaaagttttt aaaattgtaggGAAAAAATCTAGCTTCCCTCTTTCTTGTTTCAGGATTCC TACCAACTACCTCTAACAACACCGAAAGACACAGCAGCAGTGACAGACCA ATACTATCAGAATTAACAACTATCAAACCAAACACAATGCCAGAACTACA ACATCAACAATCTTTAGAAGCAGTAACAGTTACAACACCTATTACCAATC AAACTTCGCCACCACAACCAATAACAACAAACAACCAGCATTCTGAACAT GGGATCCAATTTTGTTGGTTTATCTTCAGTCTTCCTCTTGTCAGCTCTTT CCTCTCATTCATTGCTTGTTTAATAGCATACAGAGTGGGTGTAGATGAGA AACGCCTACAACCTTTACCTTTCATCCCATTTATCAGTGACATCGGCGAC GTCAAACCAGGATCTAGCTTCTTCACATTCTTTCTAATCCTTAGCAGTCT GGTGACTCTCATAATTATCACAGTCAGGTATTACCAAGTAGCTTCCAAAG CTGAAACTGACAAGTCTAGAAACAGCTCCCCAACAGAATTAAGAAGCAAC AGGGATAACCCGTTAGAAGAAGCAAGAACCAAACGATCCATACAACGATT GAATACAGCAGCTTTGGTATCAAGTTGTATTTTCCTGGTTTGTAAAATTG GTGTGTCATCTTTTCAGTTGAATaactataaaaaaattcatcttggtttt gcttgcttttatttttttggtgCAGCCCTTTATACTGTTTTTCAAGTTTG TATCACTTTCAAGATGATTGGTGGTTTAAACGGACTGAAAAAACTCCTTA CAGGGGACATGTCTTCGAAGTGTCAAGGCTCTGTCtttttatcaagagtt atctGTTCTTTGGCACttatcatcaattttttcattgTTGGTGTTTTTGT TACTGTACCCTCATTGAAAGTTCATAATCGTGGTGGAGCCAATGTGGGTC AAAGTGCTGAATGGGCTTTCGctggattcaaattatttttcttctcGACA TTTTCGTATGAATTCTGGAAAATTCGTTTCACGTTTCTAATGAAGTTTGA TGAGATTGAGAAAACGAAAACCGAAAGTTTCCCGATCAAAAATTGTGACA CTACCGATGGGCTGCCATCGCAAGTATCATACAGCAAACTGCAATGATCG TGACATTTGTATTGTATAGGCTTAACTCGCCATTTTGATTAAGTCTGATA TGTGATACATAAAGTTCTTTCATAAAGATTTGCGAGTTGAAGAGCTAGAT GTCAATGAACGTTAAAAATTAAATAACTTTAGACTGAAAATTTGACTTCT ACGATTTTAGTCCCTTGTAGAACGCAAACTGTGATTCAAAAAATTCACCT TGTATCTTGTATTTATAGAGACGACGAAGGTTGGGGGCCATCTTGCATAA GTTCATTTTTAAtttatcaagatttttaaacaaatttgaaTATCAGATCA GAGTTTTAATAGTGATCTAAATTAAATAATGTTATTGTAAATACGTTCCT TGATTTCATTTAAGTATCAAAAGTTTTACctatttttacagtttttttta caaaatgatatattttatgttttccaACTCCATGTccaatatatttattt ttcttgatttttaaagtaaagaaatttttaaagtacagtatttttgaatt ttgagtgAAATTCAGCAGAGACAATATCGAAGACATTTGCAccatcagat ggtttgagatatttggccttAGTACCTTCTACGGTCCTGAGTAAAACCTC CAAGTATTTTGGCCTAACTATCGAGATAACACAATTTGAAATTACTGAAA ATGAGTTCTTACACGGTTAAACTTTCGTTGTAATTCTtactaaaagtaaa aatatctcaaaccatctgattatccctttaaatggTAGGCGTGATACAAT TTTGACCGCTCTTTGGTGACCACTTCTTGATAACCTTTCTCGGAATCCTA AAAGGGTGAATTAAAGGAACTGGGTTCGAGTTTTTAAGAGAGGTACTATT CAACAGTTGTCAATTCTAATTCCCCCCCTCAGAGCAATCTTTCAATTTCG TAATTCTGTAACTTTCAGACGTTaaaagttaagtttattcttttAATGTA AatagtttttgtttattttatacgtgacaaaacaaacaaaagaagTAAAA ACGTTTTCGACTGTTCAAAAATGACACACGCGAGTTATCTTTATTCCCTA CGTATTTTTCCTCTAAAATGAAACGTGATCTTTAGGCCTCAGGCCTTCTA GAAAACTCCTAATGAACTCTTGAAAGAAAACCCATTAATTTAAGTCTCGC CTAATTGAAATTACAAAGGTCTATCTAAAACCTGGTTTATCCCAGGTGCT ATCGACAGTCGATGTGTGTTTTGATCTAGAATTTAGAGGACCTTTTgctt taaaaacaattttacacccctgtctcacagccccgaccGAGCTATTttcc tcaatggggataaaaattctaaattttccagtggggctggggtcccagcg ggtctgtgagacaggggtgtagtaTATTTTGATTAATACATAAGTTTTGA CCATGAGTCAGAACTCTTTGAGACAAATGCTCCCTCTAAAGACACGAAAG GTTAATGTCAGACGCACATTAAAGAGAAGTAATCCAATACTTCTCAAATA CTGTACACGTTTgcttttcataagaacatccaaaatttTTGAAGCCTTGG GATGTTcccaactttttgagttttaagcctaaaaatgttcttaacatgtt cttattttcaccattttgtgagtatttttgcctattttcataagaaattg gatgttttagagtccacaaagccttaaaatgttcttaacttgttcttaat aatttggtcatcgaagccttatgttcttacatagtttgttcctATAAACA ACCTATACTTTTCAAATAATGTAGATTCGCATTATTGACACATATAAATA GATGATTGACACAAGAGGTATTCAGATTTCCTTTTACAGAATTCTTTTAC TGATGTGATGTTGGCTTTCGAGAATCTCTTGTGTCAAGTTTCGTCTACCA TCACTTTAAAAGTTTTCGGTATCTAAGTCTTGTATGGTCTTGTAATATTT AAACTTTCATGTCTTTCGTGATTGGGGTTGCCAGTTTAAAGCTGTGGGAC CACACACCCTGGATTTTATGGGGCAACATATGGGCAACATATATAACTTT ACAGTTATACacaaattttacacttttttggatttttgatgttttttcta CTAAAAGGTTGTAACAGTTGGTAACAGGTCTGAGACAGGTGTTACaccct tgtttttttttaaatggtggTTCtatcatttcatcatggatatcaTTAAC cttgtcaaatatttttatattatgcgGAGTATCAGAATCCGCTCGGAGCA TTAAAAGCTTCAAAACTTAGTGTAATAAACTTGAATcttgattttttaac ctttcagtGAATGGAAGACTTCAAAAACTgagataaaacaaaagaaatcg aaCTTCGTGAtaacaagaaaaacaaaatggctgattcGAAAATACAAGCC GAAGAAGAAACAAGAACAACATTAAATGCACCAAATCATGCCAACAACAG AAAAAGCTACCAAATCAATCTGCGTTGGATTATCTTCAGCTTACCTATCA TCAGCTCTCTCTGCTCCTTCATAGCTTGTCTGATGGCGTACATTATCGGC GTGAATAGTGGAACATTGAAACCGTTACCTTTTATACCTTACATCAGCGA TACTGGAGATTTTAAACCGAATTCAAGTATATTTACTCTTTTCTTGATTT TAAGCAGCTTNAGGAGACTTTAAACCGAATTCAAGTATATTTACTCTATT CTTGATTTTAAGCAGCTTTGCAACGCTGGTTATTGCTATAGTACGTTTTT ACCAAATTGCAGCCGAAGCTAGATGCTCTATAGCGAACAGAGCAGCTTTA GTATCTGCATTTCTATTTTTGCTTGGTAAAATCGTTGTTTCGTCGTTTCA ACTTTCATCAAATATTTTCGTCCATTTTGCAGCCGCTGGGTTATATTTCC TTGGTGCAACGATCTACACGTTATTACAATGTTACATTACTTATCGATTC CTTGGTGATTCAATTAATAAAGAAAGATTCGTCAAAGATTCTACTTGGAG ACGAGGATGTATTGTTTATTTGATTCGTGTAGTGTGTTGTGTCGGTCTAG TAATCAATTTAATCATATTTGGCGTATTTGCAACAATCCCTTCTTTAGAG ATTCATAACAGAGGTGGAGCCAATGTGGCGCAAGCTACAGAATGGGCGTT GGCAGCATTTAAAATTATATTCCTATCAACATTCACTTATGACTTCTGGA ACATCGAGTTCAAATTTGGAATGGAATTCAAAACAATCCAACCAAAAGAT TTTCCTTCACCAGAAACTCAAGTTTCAATAGATATCGAGGACAATATTAG ACTTGCTAGATATACAAGATTTGATTCGAAGGAGCcaaataaagtgaaaa ttgAGTTCCATACATGAATAAAACATGACGTTAAATTTCAATCGAGCTAA AAACCGTAATTCACGAAGCCAAATTGAACATTGTTTTTCCAAAAAGATAT GCCTTAATCTCATTTACCATGGTTGTAGTCTAAATAATCGATTGAAAGTG AAATATAGCTACAATCCTTCGCAGGGGGATTtcttgtctcaaatattttg tccatgattgtacatATAATTCAAAGTttagatttttaaggaaataaaaa ataatatttcaggACACGACTaacaatatttttgatttatataatttgaa attattttcaaaaagattacGGTTATCCCTTCGTGTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000280XLOC_000280Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000434-exon-sc0000002-1491911889:592162..592214TCONS_00000434-exon-sc0000002-1491911889:592162..592214Clytia hemisphaericaexon
TCONS_00000434-exon-sc0000002-1510915933:592162..592214TCONS_00000434-exon-sc0000002-1510915933:592162..592214Clytia hemisphaericaexon
TCONS_00000434-exon-sc0000002-1575043694:592162..592214TCONS_00000434-exon-sc0000002-1575043694:592162..592214Clytia hemisphaericaexon
TCONS_00000434-exon-sc0000002-1491911889:596819..598200TCONS_00000434-exon-sc0000002-1491911889:596819..598200Clytia hemisphaericaexon
TCONS_00000434-exon-sc0000002-1510915933:596819..598200TCONS_00000434-exon-sc0000002-1510915933:596819..598200Clytia hemisphaericaexon
TCONS_00000434-exon-sc0000002-1575043694:596819..598200TCONS_00000434-exon-sc0000002-1575043694:596819..598200Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:592162..598200 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.76521 1.66492 0.589767 0.320553 0.0780485 0.061675 1.15333 0.626941 0.414551 0.271846 0.732947 0.231269 1.41169 0.999338 1.75821 1.46361 2.18181 2.08977 2.19534 2.06834 0.867302 0.859763 3.882 4.84169 0.994215 1.33097 3.90707 2.30371 2.9228 3.27239
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000434 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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