TCONS_00000434 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000434
Unique NameTCONS_00000434
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1435

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000434 ID=TCONS_00000434|Name=TCONS_00000434|organism=Clytia hemisphaerica|type=transcript|length=1435bp
GACAAATtcatttgttgatttttgagAGGGaacatttaatttgaaaaaaa
tactGAATGGAAGACTTCAAAAACTgagataaaacaaaagaaatcgaaCT
TCGTGAtaacaagaaaaacaaaatggctgattcGAAAATACAAGCCGAAG
AAGAAACAAGAACAACATTAAATGCACCAAATCATGCCAACAACAGAAAA
AGCTACCAAATCAATCTGCGTTGGATTATCTTCAGCTTACCTATCATCAG
CTCTCTCTGCTCCTTCATAGCTTGTCTGATGGCGTACATTATCGGCGTGA
ATAGTGGAACATTGAAACCGTTACCTTTTATACCTTACATCAGCGATACT
GGAGATTTTAAACCGAATTCAAGTATATTTACTCTTTTCTTGATTTTAAG
CAGCTTNAGGAGACTTTAAACCGAATTCAAGTATATTTACTCTATTCTTG
ATTTTAAGCAGCTTTGCAACGCTGGTTATTGCTATAGTACGTTTTTACCA
AATTGCAGCCGAAGCTAGATGCTCTATAGCGAACAGAGCAGCTTTAGTAT
CTGCATTTCTATTTTTGCTTGGTAAAATCGTTGTTTCGTCGTTTCAACTT
TCATCAAATATTTTCGTCCATTTTGCAGCCGCTGGGTTATATTTCCTTGG
TGCAACGATCTACACGTTATTACAATGTTACATTACTTATCGATTCCTTG
GTGATTCAATTAATAAAGAAAGATTCGTCAAAGATTCTACTTGGAGACGA
GGATGTATTGTTTATTTGATTCGTGTAGTGTGTTGTGTCGGTCTAGTAAT
CAATTTAATCATATTTGGCGTATTTGCAACAATCCCTTCTTTAGAGATTC
ATAACAGAGGTGGAGCCAATGTGGCGCAAGCTACAGAATGGGCGTTGGCA
GCATTTAAAATTATATTCCTATCAACATTCACTTATGACTTCTGGAACAT
CGAGTTCAAATTTGGAATGGAATTCAAAACAATCCAACCAAAAGATTTTC
CTTCACCAGAAACTCAAGTTTCAATAGATATCGAGGACAATATTAGACTT
GCTAGATATACAAGATTTGATTCGAAGGAGCcaaataaagtgaaaattgA
GTTCCATACATGAATAAAACATGACGTTAAATTTCAATCGAGCTAAAAAC
CGTAATTCACGAAGCCAAATTGAACATTGTTTTTCCAAAAAGATATGCCT
TAATCTCATTTACCATGGTTGTAGTCTAAATAATCGATTGAAAGTGAAAT
ATAGCTACAATCCTTCGCAGGGGGATTtcttgtctcaaatattttgtcca
tgattgtacatATAATTCAAAGTttagatttttaaggaaataaaaaataa
tatttcaggACACGACTaacaatatttttgatttatataatttgaaatta
ttttcaaaaagattacGGTTATCCCTTCGTGTATT
Run BLAST on NCBI

transcript from alignment at sc0000002:592162..598200+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000434 ID=TCONS_00000434|Name=TCONS_00000434|organism=Clytia hemisphaerica|type=transcript|length=6039bp|location=Sequence derived from alignment at sc0000002:592162..598200+ (Clytia hemisphaerica)
GACAAATtcatttgttgatttttgagAGGGaacatttaatttgaaaaaaa
tacgtaagtaacttttgatttttgacaGGGTTATACAGAATCATGAAATC
GTTAGgctctgctcatcctctagcgaaagaagtttcttataggaagtata
tctatagaggtctgcgattcagactatgaAATCGTGtgaaattttcacat
gaaaaatctcatctcattgggctcttccagaaaatgtccgtacatggggg
tggaggatatattgtccgggggtagcgaaaaatcatcaaaatttgccttg
tccggggggtaaatttgctctgtctgGAGGTAATTTGgcttgtccggggg
gccaaaagtcactttgtccggggggtaaatcactgaaaattgttatatcc
tccacctcccatattcaaattttttttctggaaaatcccattttaagaaa
gattttatttatttagtatTGTCGATGCGTTAAAGATATACTCGAATAGA
TAGGATTTCAATCTtattgaagaaaaatttctcaCTTTGCCAAAATTCAC
TGTCTCATTGTAATTGACCTAGAAGATCTTTGTCGgaggaaaatcttttt
tcacgATAAGATGTTTATCAATCGTGATGAAACCGTACTTGTCCAGGGTt
aaatcacaaaaataaatctcgtacaattttttcattcaagAAAAAAccag
aaatcaaaatcaaaatctcgtGCATCTAATTTGATTGATTTAACGCTCGG
TATTACCTATGTATTTATGCTTCTAAAAGCATTCCCCACCAATAAAAAAG
TCCCCAATATTTTTCAGCGTAGGGATTTTTCGTATTGACCAGAAACCATT
TTTCCGGAAATCACCACGATTGTCCATTTCGATTTTCCCAGTATACACGT
GTGCGTGCTGCAAAATTTGATGACGAATCATGACCTATAAAAAAGCGTTT
GAAAAGTTTCTAACAGATTAAATACCTCCTATGTATTGAGAGGAAAGGAA
CTAAGCGCTTATAAGACAGTGAAGATTTGCAACTTTAGAATAAACAACAA
AGTAACGTTTCAAAGTAAGTTCACAAAAATGCTTGATAGTTTAGTTTGAT
TTTAACAAGAGGCTTGAAAATTAAAGTCGTAGACAGCAAAACTTTGTTAA
ATGACAATAGTATCCaggtttacatttttttgaatagaaacaaagttttt
aaaattgtaggGAAAAAATCTAGCTTCCCTCTTTCTTGTTTCAGGATTCC
TACCAACTACCTCTAACAACACCGAAAGACACAGCAGCAGTGACAGACCA
ATACTATCAGAATTAACAACTATCAAACCAAACACAATGCCAGAACTACA
ACATCAACAATCTTTAGAAGCAGTAACAGTTACAACACCTATTACCAATC
AAACTTCGCCACCACAACCAATAACAACAAACAACCAGCATTCTGAACAT
GGGATCCAATTTTGTTGGTTTATCTTCAGTCTTCCTCTTGTCAGCTCTTT
CCTCTCATTCATTGCTTGTTTAATAGCATACAGAGTGGGTGTAGATGAGA
AACGCCTACAACCTTTACCTTTCATCCCATTTATCAGTGACATCGGCGAC
GTCAAACCAGGATCTAGCTTCTTCACATTCTTTCTAATCCTTAGCAGTCT
GGTGACTCTCATAATTATCACAGTCAGGTATTACCAAGTAGCTTCCAAAG
CTGAAACTGACAAGTCTAGAAACAGCTCCCCAACAGAATTAAGAAGCAAC
AGGGATAACCCGTTAGAAGAAGCAAGAACCAAACGATCCATACAACGATT
GAATACAGCAGCTTTGGTATCAAGTTGTATTTTCCTGGTTTGTAAAATTG
GTGTGTCATCTTTTCAGTTGAATaactataaaaaaattcatcttggtttt
gcttgcttttatttttttggtgCAGCCCTTTATACTGTTTTTCAAGTTTG
TATCACTTTCAAGATGATTGGTGGTTTAAACGGACTGAAAAAACTCCTTA
CAGGGGACATGTCTTCGAAGTGTCAAGGCTCTGTCtttttatcaagagtt
atctGTTCTTTGGCACttatcatcaattttttcattgTTGGTGTTTTTGT
TACTGTACCCTCATTGAAAGTTCATAATCGTGGTGGAGCCAATGTGGGTC
AAAGTGCTGAATGGGCTTTCGctggattcaaattatttttcttctcGACA
TTTTCGTATGAATTCTGGAAAATTCGTTTCACGTTTCTAATGAAGTTTGA
TGAGATTGAGAAAACGAAAACCGAAAGTTTCCCGATCAAAAATTGTGACA
CTACCGATGGGCTGCCATCGCAAGTATCATACAGCAAACTGCAATGATCG
TGACATTTGTATTGTATAGGCTTAACTCGCCATTTTGATTAAGTCTGATA
TGTGATACATAAAGTTCTTTCATAAAGATTTGCGAGTTGAAGAGCTAGAT
GTCAATGAACGTTAAAAATTAAATAACTTTAGACTGAAAATTTGACTTCT
ACGATTTTAGTCCCTTGTAGAACGCAAACTGTGATTCAAAAAATTCACCT
TGTATCTTGTATTTATAGAGACGACGAAGGTTGGGGGCCATCTTGCATAA
GTTCATTTTTAAtttatcaagatttttaaacaaatttgaaTATCAGATCA
GAGTTTTAATAGTGATCTAAATTAAATAATGTTATTGTAAATACGTTCCT
TGATTTCATTTAAGTATCAAAAGTTTTACctatttttacagtttttttta
caaaatgatatattttatgttttccaACTCCATGTccaatatatttattt
ttcttgatttttaaagtaaagaaatttttaaagtacagtatttttgaatt
ttgagtgAAATTCAGCAGAGACAATATCGAAGACATTTGCAccatcagat
ggtttgagatatttggccttAGTACCTTCTACGGTCCTGAGTAAAACCTC
CAAGTATTTTGGCCTAACTATCGAGATAACACAATTTGAAATTACTGAAA
ATGAGTTCTTACACGGTTAAACTTTCGTTGTAATTCTtactaaaagtaaa
aatatctcaaaccatctgattatccctttaaatggTAGGCGTGATACAAT
TTTGACCGCTCTTTGGTGACCACTTCTTGATAACCTTTCTCGGAATCCTA
AAAGGGTGAATTAAAGGAACTGGGTTCGAGTTTTTAAGAGAGGTACTATT
CAACAGTTGTCAATTCTAATTCCCCCCCTCAGAGCAATCTTTCAATTTCG
TAATTCTGTAACTTTCAGACGTTaaaagttaagtttattcttttAATGTA
AatagtttttgtttattttatacgtgacaaaacaaacaaaagaagTAAAA
ACGTTTTCGACTGTTCAAAAATGACACACGCGAGTTATCTTTATTCCCTA
CGTATTTTTCCTCTAAAATGAAACGTGATCTTTAGGCCTCAGGCCTTCTA
GAAAACTCCTAATGAACTCTTGAAAGAAAACCCATTAATTTAAGTCTCGC
CTAATTGAAATTACAAAGGTCTATCTAAAACCTGGTTTATCCCAGGTGCT
ATCGACAGTCGATGTGTGTTTTGATCTAGAATTTAGAGGACCTTTTgctt
taaaaacaattttacacccctgtctcacagccccgaccGAGCTATTttcc
tcaatggggataaaaattctaaattttccagtggggctggggtcccagcg
ggtctgtgagacaggggtgtagtaTATTTTGATTAATACATAAGTTTTGA
CCATGAGTCAGAACTCTTTGAGACAAATGCTCCCTCTAAAGACACGAAAG
GTTAATGTCAGACGCACATTAAAGAGAAGTAATCCAATACTTCTCAAATA
CTGTACACGTTTgcttttcataagaacatccaaaatttTTGAAGCCTTGG
GATGTTcccaactttttgagttttaagcctaaaaatgttcttaacatgtt
cttattttcaccattttgtgagtatttttgcctattttcataagaaattg
gatgttttagagtccacaaagccttaaaatgttcttaacttgttcttaat
aatttggtcatcgaagccttatgttcttacatagtttgttcctATAAACA
ACCTATACTTTTCAAATAATGTAGATTCGCATTATTGACACATATAAATA
GATGATTGACACAAGAGGTATTCAGATTTCCTTTTACAGAATTCTTTTAC
TGATGTGATGTTGGCTTTCGAGAATCTCTTGTGTCAAGTTTCGTCTACCA
TCACTTTAAAAGTTTTCGGTATCTAAGTCTTGTATGGTCTTGTAATATTT
AAACTTTCATGTCTTTCGTGATTGGGGTTGCCAGTTTAAAGCTGTGGGAC
CACACACCCTGGATTTTATGGGGCAACATATGGGCAACATATATAACTTT
ACAGTTATACacaaattttacacttttttggatttttgatgttttttcta
CTAAAAGGTTGTAACAGTTGGTAACAGGTCTGAGACAGGTGTTACaccct
tgtttttttttaaatggtggTTCtatcatttcatcatggatatcaTTAAC
cttgtcaaatatttttatattatgcgGAGTATCAGAATCCGCTCGGAGCA
TTAAAAGCTTCAAAACTTAGTGTAATAAACTTGAATcttgattttttaac
ctttcagtGAATGGAAGACTTCAAAAACTgagataaaacaaaagaaatcg
aaCTTCGTGAtaacaagaaaaacaaaatggctgattcGAAAATACAAGCC
GAAGAAGAAACAAGAACAACATTAAATGCACCAAATCATGCCAACAACAG
AAAAAGCTACCAAATCAATCTGCGTTGGATTATCTTCAGCTTACCTATCA
TCAGCTCTCTCTGCTCCTTCATAGCTTGTCTGATGGCGTACATTATCGGC
GTGAATAGTGGAACATTGAAACCGTTACCTTTTATACCTTACATCAGCGA
TACTGGAGATTTTAAACCGAATTCAAGTATATTTACTCTTTTCTTGATTT
TAAGCAGCTTNAGGAGACTTTAAACCGAATTCAAGTATATTTACTCTATT
CTTGATTTTAAGCAGCTTTGCAACGCTGGTTATTGCTATAGTACGTTTTT
ACCAAATTGCAGCCGAAGCTAGATGCTCTATAGCGAACAGAGCAGCTTTA
GTATCTGCATTTCTATTTTTGCTTGGTAAAATCGTTGTTTCGTCGTTTCA
ACTTTCATCAAATATTTTCGTCCATTTTGCAGCCGCTGGGTTATATTTCC
TTGGTGCAACGATCTACACGTTATTACAATGTTACATTACTTATCGATTC
CTTGGTGATTCAATTAATAAAGAAAGATTCGTCAAAGATTCTACTTGGAG
ACGAGGATGTATTGTTTATTTGATTCGTGTAGTGTGTTGTGTCGGTCTAG
TAATCAATTTAATCATATTTGGCGTATTTGCAACAATCCCTTCTTTAGAG
ATTCATAACAGAGGTGGAGCCAATGTGGCGCAAGCTACAGAATGGGCGTT
GGCAGCATTTAAAATTATATTCCTATCAACATTCACTTATGACTTCTGGA
ACATCGAGTTCAAATTTGGAATGGAATTCAAAACAATCCAACCAAAAGAT
TTTCCTTCACCAGAAACTCAAGTTTCAATAGATATCGAGGACAATATTAG
ACTTGCTAGATATACAAGATTTGATTCGAAGGAGCcaaataaagtgaaaa
ttgAGTTCCATACATGAATAAAACATGACGTTAAATTTCAATCGAGCTAA
AAACCGTAATTCACGAAGCCAAATTGAACATTGTTTTTCCAAAAAGATAT
GCCTTAATCTCATTTACCATGGTTGTAGTCTAAATAATCGATTGAAAGTG
AAATATAGCTACAATCCTTCGCAGGGGGATTtcttgtctcaaatattttg
tccatgattgtacatATAATTCAAAGTttagatttttaaggaaataaaaa
ataatatttcaggACACGACTaacaatatttttgatttatataatttgaa
attattttcaaaaagattacGGTTATCCCTTCGTGTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000280XLOC_000280Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000434-exon-sc0000002-1491911889:592162..592214TCONS_00000434-exon-sc0000002-1491911889:592162..592214Clytia hemisphaericaexon
TCONS_00000434-exon-sc0000002-1510915933:592162..592214TCONS_00000434-exon-sc0000002-1510915933:592162..592214Clytia hemisphaericaexon
TCONS_00000434-exon-sc0000002-1575043694:592162..592214TCONS_00000434-exon-sc0000002-1575043694:592162..592214Clytia hemisphaericaexon
TCONS_00000434-exon-sc0000002-1491911889:596819..598200TCONS_00000434-exon-sc0000002-1491911889:596819..598200Clytia hemisphaericaexon
TCONS_00000434-exon-sc0000002-1510915933:596819..598200TCONS_00000434-exon-sc0000002-1510915933:596819..598200Clytia hemisphaericaexon
TCONS_00000434-exon-sc0000002-1575043694:596819..598200TCONS_00000434-exon-sc0000002-1575043694:596819..598200Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:592162..598200 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.76521	1.66492	0.589767	0.320553	0.0780485	0.061675	1.15333	0.626941	0.414551	0.271846	0.732947	0.231269	1.41169	0.999338	1.75821	1.46361	2.18181	2.08977	2.19534	2.06834	0.867302	0.859763	3.882	4.84169	0.994215	1.33097	3.90707	2.30371	2.9228	3.27239
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000434 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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