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TCONS_00000433 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000433
Unique NameTCONS_00000433
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1229

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000433 ID=TCONS_00000433|Name=TCONS_00000433|organism=Clytia hemisphaerica|type=transcript|length=1229bp
GAGAAAGGAAGACAAACGTTAGAAGGACAAATtcatttgttgatttttga
gAGGGaacatttaatttgaaaaaaatacGATTCCTACCAACTACCTCTAA
CAACACCGAAAGACACAGCAGCAGTGACAGACCAATACTATCAGAATTAA
CAACTATCAAACCAAACACAATGCCAGAACTACAACATCAACAATCTTTA
GAAGCAGTAACAGTTACAACACCTATTACCAATCAAACTTCGCCACCACA
ACCAATAACAACAAACAACCAGCATTCTGAACATGGGATCCAATTTTGTT
GGTTTATCTTCAGTCTTCCTCTTGTCAGCTCTTTCCTCTCATTCATTGCT
TGTTTAATAGCATACAGAGTGGGTGTAGATGAGAAACGCCTACAACCTTT
ACCTTTCATCCCATTTATCAGTGACATCGGCGACGTCAAACCAGGATCTA
GCTTCTTCACATTCTTTCTAATCCTTAGCAGTCTGGTGACTCTCATAATT
ATCACAGTCAGGTATTACCAAGTAGCTTCCAAAGCTGAAACTGACAAGTC
TAGAAACAGCTCCCCAACAGAATTAAGAAGCAACAGGGATAACCCGTTAG
AAGAAGCAAGAACCAAACGATCCATACAACGATTGAATACAGCAGCTTTG
GTATCAAGTTGTATTTTCCTGGTTTGTAAAATTGGTGTGTCATCTTTTCA
GTTGAATaactataaaaaaattcatcttggttttgcttgcttttattttt
ttggtgCAGCCCTTTATACTGTTTTTCAAGTTTGTATCACTTTCAAGATG
ATTGGTGGTTTAAACGGACTGAAAAAACTCCTTACAGGGGACATGTCTTC
GAAGTGTCAAGGCTCTGTCtttttatcaagagttatctGTTCTTTGGCAC
ttatcatcaattttttcattgTTGGTGTTTTTGTTACTGTACCCTCATTG
AAAGTTCATAATCGTGGTGGAGCCAATGTGGGTCAAAGTGCTGAATGGGC
TTTCGctggattcaaattatttttcttctcGACATTTTCGTATGAATTCT
GGAAAATTCGTTTCACGTTTCTAATGAAGTTTGATGAGATTGAGAAAACG
AAAACCGAAAGTTTCCCGATCAAAAATTGTGACACTACCGATGGGCTGCC
ATCGCAAGTATCATACAGCAAACTGCAATGATCGTGACATTTGTATTGTA
TAGGCTTAACTCGCCATTTTGATTAAGTC
Run BLAST on NCBI

protein sequence of TCONS_00000433-protein

>TCONS_00000433-protein ID=TCONS_00000433-protein|Name=TCONS_00000433-protein|organism=Clytia hemisphaerica|type=polypeptide|length=336bp
MPELQHQQSLEAVTVTTPITNQTSPPQPITTNNQHSEHGIQFCWFIFSLP
LVSSFLSFIACLIAYRVGVDEKRLQPLPFIPFISDIGDVKPGSSFFTFFL
ILSSLVTLIIITVRYYQVASKAETDKSRNSSPTELRSNRDNPLEEARTKR
SIQRLNTAALVSSCIFLVCKIGVSSFQLNNYKKIHLGFACFYFFGAALYT
VFQVCITFKMIGGLNGLKKLLTGDMSSKCQGSVFLSRVICSLALIINFFI
VGVFVTVPSLKVHNRGGANVGQSAEWAFAGFKLFFFSTFSYEFWKIRFTF
LMKFDEIEKTKTESFPIKNCDTTDGLPSQVSYSKLQ
Run BLAST on NCBI

transcript from alignment at sc0000002:592137..594556+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000433 ID=TCONS_00000433|Name=TCONS_00000433|organism=Clytia hemisphaerica|type=transcript|length=2420bp|location=Sequence derived from alignment at sc0000002:592137..594556+ (Clytia hemisphaerica)
GAGAAAGGAAGACAAACGTTAGAAGGACAAATtcatttgttgatttttga gAGGGaacatttaatttgaaaaaaatacgtaagtaacttttgatttttga caGGGTTATACAGAATCATGAAATCGTTAGgctctgctcatcctctagcg aaagaagtttcttataggaagtatatctatagaggtctgcgattcagact atgaAATCGTGtgaaattttcacatgaaaaatctcatctcattgggctct tccagaaaatgtccgtacatgggggtggaggatatattgtccgggggtag cgaaaaatcatcaaaatttgccttgtccggggggtaaatttgctctgtct gGAGGTAATTTGgcttgtccggggggccaaaagtcactttgtccgggggg taaatcactgaaaattgttatatcctccacctcccatattcaaatttttt ttctggaaaatcccattttaagaaagattttatttatttagtatTGTCGA TGCGTTAAAGATATACTCGAATAGATAGGATTTCAATCTtattgaagaaa aatttctcaCTTTGCCAAAATTCACTGTCTCATTGTAATTGACCTAGAAG ATCTTTGTCGgaggaaaatcttttttcacgATAAGATGTTTATCAATCGT GATGAAACCGTACTTGTCCAGGGTtaaatcacaaaaataaatctcgtaca attttttcattcaagAAAAAAccagaaatcaaaatcaaaatctcgtGCAT CTAATTTGATTGATTTAACGCTCGGTATTACCTATGTATTTATGCTTCTA AAAGCATTCCCCACCAATAAAAAAGTCCCCAATATTTTTCAGCGTAGGGA TTTTTCGTATTGACCAGAAACCATTTTTCCGGAAATCACCACGATTGTCC ATTTCGATTTTCCCAGTATACACGTGTGCGTGCTGCAAAATTTGATGACG AATCATGACCTATAAAAAAGCGTTTGAAAAGTTTCTAACAGATTAAATAC CTCCTATGTATTGAGAGGAAAGGAACTAAGCGCTTATAAGACAGTGAAGA TTTGCAACTTTAGAATAAACAACAAAGTAACGTTTCAAAGTAAGTTCACA AAAATGCTTGATAGTTTAGTTTGATTTTAACAAGAGGCTTGAAAATTAAA GTCGTAGACAGCAAAACTTTGTTAAATGACAATAGTATCCaggtttacat ttttttgaatagaaacaaagtttttaaaattgtaggGAAAAAATCTAGCT TCCCTCTTTCTTGTTTCAGGATTCCTACCAACTACCTCTAACAACACCGA AAGACACAGCAGCAGTGACAGACCAATACTATCAGAATTAACAACTATCA AACCAAACACAATGCCAGAACTACAACATCAACAATCTTTAGAAGCAGTA ACAGTTACAACACCTATTACCAATCAAACTTCGCCACCACAACCAATAAC AACAAACAACCAGCATTCTGAACATGGGATCCAATTTTGTTGGTTTATCT TCAGTCTTCCTCTTGTCAGCTCTTTCCTCTCATTCATTGCTTGTTTAATA GCATACAGAGTGGGTGTAGATGAGAAACGCCTACAACCTTTACCTTTCAT CCCATTTATCAGTGACATCGGCGACGTCAAACCAGGATCTAGCTTCTTCA CATTCTTTCTAATCCTTAGCAGTCTGGTGACTCTCATAATTATCACAGTC AGGTATTACCAAGTAGCTTCCAAAGCTGAAACTGACAAGTCTAGAAACAG CTCCCCAACAGAATTAAGAAGCAACAGGGATAACCCGTTAGAAGAAGCAA GAACCAAACGATCCATACAACGATTGAATACAGCAGCTTTGGTATCAAGT TGTATTTTCCTGGTTTGTAAAATTGGTGTGTCATCTTTTCAGTTGAATaa ctataaaaaaattcatcttggttttgcttgcttttatttttttggtgCAG CCCTTTATACTGTTTTTCAAGTTTGTATCACTTTCAAGATGATTGGTGGT TTAAACGGACTGAAAAAACTCCTTACAGGGGACATGTCTTCGAAGTGTCA AGGCTCTGTCtttttatcaagagttatctGTTCTTTGGCACttatcatca attttttcattgTTGGTGTTTTTGTTACTGTACCCTCATTGAAAGTTCAT AATCGTGGTGGAGCCAATGTGGGTCAAAGTGCTGAATGGGCTTTCGctgg attcaaattatttttcttctcGACATTTTCGTATGAATTCTGGAAAATTC GTTTCACGTTTCTAATGAAGTTTGATGAGATTGAGAAAACGAAAACCGAA AGTTTCCCGATCAAAAATTGTGACACTACCGATGGGCTGCCATCGCAAGT ATCATACAGCAAACTGCAATGATCGTGACATTTGTATTGTATAGGCTTAA CTCGCCATTTTGATTAAGTC

Coding sequence (CDS) from alignment at sc0000002:592137..594556+

>TCONS_00000433 ID=TCONS_00000433|Name=TCONS_00000433|organism=Clytia hemisphaerica|type=CDS|length=1011bp|location=Sequence derived from alignment at sc0000002:592137..594556+ (Clytia hemisphaerica)
ATGCCAGAACTACAACATCAACAATCTTTAGAAGCAGTAACAGTTACAAC
ACCTATTACCAATCAAACTTCGCCACCACAACCAATAACAACAAACAACC
AGCATTCTGAACATGGGATCCAATTTTGTTGGTTTATCTTCAGTCTTCCT
CTTGTCAGCTCTTTCCTCTCATTCATTGCTTGTTTAATAGCATACAGAGT
GGGTGTAGATGAGAAACGCCTACAACCTTTACCTTTCATCCCATTTATCA
GTGACATCGGCGACGTCAAACCAGGATCTAGCTTCTTCACATTCTTTCTA
ATCCTTAGCAGTCTGGTGACTCTCATAATTATCACAGTCAGGTATTACCA
AGTAGCTTCCAAAGCTGAAACTGACAAGTCTAGAAACAGCTCCCCAACAG
AATTAAGAAGCAACAGGGATAACCCGTTAGAAGAAGCAAGAACCAAACGA
TCCATACAACGATTGAATACAGCAGCTTTGGTATCAAGTTGTATTTTCCT
GGTTTGTAAAATTGGTGTGTCATCTTTTCAGTTGAATaactataaaaaaa
ttcatcttggttttgcttgcttttatttttttggtgCAGCCCTTTATACT
GTTTTTCAAGTTTGTATCACTTTCAAGATGATTGGTGGTTTAAACGGACT
GAAAAAACTCCTTACAGGGGACATGTCTTCGAAGTGTCAAGGCTCTGTCt
ttttatcaagagttatctGTTCTTTGGCACttatcatcaattttttcatt
gTTGGTGTTTTTGTTACTGTACCCTCATTGAAAGTTCATAATCGTGGTGG
AGCCAATGTGGGTCAAAGTGCTGAATGGGCTTTCGctggattcaaattat
ttttcttctcGACATTTTCGTATGAATTCTGGAAAATTCGTTTCACGTTT
CTAATGAAGTTTGATGAGATTGAGAAAACGAAAACCGAAAGTTTCCCGAT
CAAAAATTGTGACACTACCGATGGGCTGCCATCGCAAGTATCATACAGCA
AACTGCAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000280XLOC_000280Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000433-proteinTCONS_00000433-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000433-exon-sc0000002-1491911889:592137..592214TCONS_00000433-exon-sc0000002-1491911889:592137..592214Clytia hemisphaericaexon
TCONS_00000433-exon-sc0000002-1510915933:592137..592214TCONS_00000433-exon-sc0000002-1510915933:592137..592214Clytia hemisphaericaexon
TCONS_00000433-exon-sc0000002-1575043694:592137..592214TCONS_00000433-exon-sc0000002-1575043694:592137..592214Clytia hemisphaericaexon
TCONS_00000433-exon-sc0000002-1491911889:593406..594556TCONS_00000433-exon-sc0000002-1491911889:593406..594556Clytia hemisphaericaexon
TCONS_00000433-exon-sc0000002-1510915933:593406..594556TCONS_00000433-exon-sc0000002-1510915933:593406..594556Clytia hemisphaericaexon
TCONS_00000433-exon-sc0000002-1575043694:593406..594556TCONS_00000433-exon-sc0000002-1575043694:593406..594556Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:592137..594556 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.118146 0.0770584 0.120835 0.624817 0.20443 0.02966 1.66649 8.33802 0 0.000313796 2.60939 3.96787 1.80132 1.55147 2.82973 2.7977 3.79624 6.05648 0.00117628 0 1.58864 1.58367 4.92407 4.89931 6.75455 9.18894 0 0.632312
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019402Frag1/DRAM/Sfk1
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000433 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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