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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000433 ID=TCONS_00000433|Name=TCONS_00000433|organism=Clytia hemisphaerica|type=transcript|length=1229bp
GAGAAAGGAAGACAAACGTTAGAAGGACAAATtcatttgttgatttttga
gAGGGaacatttaatttgaaaaaaatacGATTCCTACCAACTACCTCTAA
CAACACCGAAAGACACAGCAGCAGTGACAGACCAATACTATCAGAATTAA
CAACTATCAAACCAAACACAATGCCAGAACTACAACATCAACAATCTTTA
GAAGCAGTAACAGTTACAACACCTATTACCAATCAAACTTCGCCACCACA
ACCAATAACAACAAACAACCAGCATTCTGAACATGGGATCCAATTTTGTT
GGTTTATCTTCAGTCTTCCTCTTGTCAGCTCTTTCCTCTCATTCATTGCT
TGTTTAATAGCATACAGAGTGGGTGTAGATGAGAAACGCCTACAACCTTT
ACCTTTCATCCCATTTATCAGTGACATCGGCGACGTCAAACCAGGATCTA
GCTTCTTCACATTCTTTCTAATCCTTAGCAGTCTGGTGACTCTCATAATT
ATCACAGTCAGGTATTACCAAGTAGCTTCCAAAGCTGAAACTGACAAGTC
TAGAAACAGCTCCCCAACAGAATTAAGAAGCAACAGGGATAACCCGTTAG
AAGAAGCAAGAACCAAACGATCCATACAACGATTGAATACAGCAGCTTTG
GTATCAAGTTGTATTTTCCTGGTTTGTAAAATTGGTGTGTCATCTTTTCA
GTTGAATaactataaaaaaattcatcttggttttgcttgcttttattttt
ttggtgCAGCCCTTTATACTGTTTTTCAAGTTTGTATCACTTTCAAGATG
ATTGGTGGTTTAAACGGACTGAAAAAACTCCTTACAGGGGACATGTCTTC
GAAGTGTCAAGGCTCTGTCtttttatcaagagttatctGTTCTTTGGCAC
ttatcatcaattttttcattgTTGGTGTTTTTGTTACTGTACCCTCATTG
AAAGTTCATAATCGTGGTGGAGCCAATGTGGGTCAAAGTGCTGAATGGGC
TTTCGctggattcaaattatttttcttctcGACATTTTCGTATGAATTCT
GGAAAATTCGTTTCACGTTTCTAATGAAGTTTGATGAGATTGAGAAAACG
AAAACCGAAAGTTTCCCGATCAAAAATTGTGACACTACCGATGGGCTGCC
ATCGCAAGTATCATACAGCAAACTGCAATGATCGTGACATTTGTATTGTA
TAGGCTTAACTCGCCATTTTGATTAAGTC Run BLAST on NCBI protein sequence of TCONS_00000433-protein >TCONS_00000433-protein ID=TCONS_00000433-protein|Name=TCONS_00000433-protein|organism=Clytia hemisphaerica|type=polypeptide|length=336bp
MPELQHQQSLEAVTVTTPITNQTSPPQPITTNNQHSEHGIQFCWFIFSLP
LVSSFLSFIACLIAYRVGVDEKRLQPLPFIPFISDIGDVKPGSSFFTFFL
ILSSLVTLIIITVRYYQVASKAETDKSRNSSPTELRSNRDNPLEEARTKR
SIQRLNTAALVSSCIFLVCKIGVSSFQLNNYKKIHLGFACFYFFGAALYT
VFQVCITFKMIGGLNGLKKLLTGDMSSKCQGSVFLSRVICSLALIINFFI
VGVFVTVPSLKVHNRGGANVGQSAEWAFAGFKLFFFSTFSYEFWKIRFTF
LMKFDEIEKTKTESFPIKNCDTTDGLPSQVSYSKLQ Run BLAST on NCBI transcript from alignment at sc0000002:592137..594556+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000433 ID=TCONS_00000433|Name=TCONS_00000433|organism=Clytia hemisphaerica|type=transcript|length=2420bp|location=Sequence derived from alignment at sc0000002:592137..594556+ (Clytia hemisphaerica)
GAGAAAGGAAGACAAACGTTAGAAGGACAAATtcatttgttgatttttga
gAGGGaacatttaatttgaaaaaaatacgtaagtaacttttgatttttga
caGGGTTATACAGAATCATGAAATCGTTAGgctctgctcatcctctagcg
aaagaagtttcttataggaagtatatctatagaggtctgcgattcagact
atgaAATCGTGtgaaattttcacatgaaaaatctcatctcattgggctct
tccagaaaatgtccgtacatgggggtggaggatatattgtccgggggtag
cgaaaaatcatcaaaatttgccttgtccggggggtaaatttgctctgtct
gGAGGTAATTTGgcttgtccggggggccaaaagtcactttgtccgggggg
taaatcactgaaaattgttatatcctccacctcccatattcaaatttttt
ttctggaaaatcccattttaagaaagattttatttatttagtatTGTCGA
TGCGTTAAAGATATACTCGAATAGATAGGATTTCAATCTtattgaagaaa
aatttctcaCTTTGCCAAAATTCACTGTCTCATTGTAATTGACCTAGAAG
ATCTTTGTCGgaggaaaatcttttttcacgATAAGATGTTTATCAATCGT
GATGAAACCGTACTTGTCCAGGGTtaaatcacaaaaataaatctcgtaca
attttttcattcaagAAAAAAccagaaatcaaaatcaaaatctcgtGCAT
CTAATTTGATTGATTTAACGCTCGGTATTACCTATGTATTTATGCTTCTA
AAAGCATTCCCCACCAATAAAAAAGTCCCCAATATTTTTCAGCGTAGGGA
TTTTTCGTATTGACCAGAAACCATTTTTCCGGAAATCACCACGATTGTCC
ATTTCGATTTTCCCAGTATACACGTGTGCGTGCTGCAAAATTTGATGACG
AATCATGACCTATAAAAAAGCGTTTGAAAAGTTTCTAACAGATTAAATAC
CTCCTATGTATTGAGAGGAAAGGAACTAAGCGCTTATAAGACAGTGAAGA
TTTGCAACTTTAGAATAAACAACAAAGTAACGTTTCAAAGTAAGTTCACA
AAAATGCTTGATAGTTTAGTTTGATTTTAACAAGAGGCTTGAAAATTAAA
GTCGTAGACAGCAAAACTTTGTTAAATGACAATAGTATCCaggtttacat
ttttttgaatagaaacaaagtttttaaaattgtaggGAAAAAATCTAGCT
TCCCTCTTTCTTGTTTCAGGATTCCTACCAACTACCTCTAACAACACCGA
AAGACACAGCAGCAGTGACAGACCAATACTATCAGAATTAACAACTATCA
AACCAAACACAATGCCAGAACTACAACATCAACAATCTTTAGAAGCAGTA
ACAGTTACAACACCTATTACCAATCAAACTTCGCCACCACAACCAATAAC
AACAAACAACCAGCATTCTGAACATGGGATCCAATTTTGTTGGTTTATCT
TCAGTCTTCCTCTTGTCAGCTCTTTCCTCTCATTCATTGCTTGTTTAATA
GCATACAGAGTGGGTGTAGATGAGAAACGCCTACAACCTTTACCTTTCAT
CCCATTTATCAGTGACATCGGCGACGTCAAACCAGGATCTAGCTTCTTCA
CATTCTTTCTAATCCTTAGCAGTCTGGTGACTCTCATAATTATCACAGTC
AGGTATTACCAAGTAGCTTCCAAAGCTGAAACTGACAAGTCTAGAAACAG
CTCCCCAACAGAATTAAGAAGCAACAGGGATAACCCGTTAGAAGAAGCAA
GAACCAAACGATCCATACAACGATTGAATACAGCAGCTTTGGTATCAAGT
TGTATTTTCCTGGTTTGTAAAATTGGTGTGTCATCTTTTCAGTTGAATaa
ctataaaaaaattcatcttggttttgcttgcttttatttttttggtgCAG
CCCTTTATACTGTTTTTCAAGTTTGTATCACTTTCAAGATGATTGGTGGT
TTAAACGGACTGAAAAAACTCCTTACAGGGGACATGTCTTCGAAGTGTCA
AGGCTCTGTCtttttatcaagagttatctGTTCTTTGGCACttatcatca
attttttcattgTTGGTGTTTTTGTTACTGTACCCTCATTGAAAGTTCAT
AATCGTGGTGGAGCCAATGTGGGTCAAAGTGCTGAATGGGCTTTCGctgg
attcaaattatttttcttctcGACATTTTCGTATGAATTCTGGAAAATTC
GTTTCACGTTTCTAATGAAGTTTGATGAGATTGAGAAAACGAAAACCGAA
AGTTTCCCGATCAAAAATTGTGACACTACCGATGGGCTGCCATCGCAAGT
ATCATACAGCAAACTGCAATGATCGTGACATTTGTATTGTATAGGCTTAA
CTCGCCATTTTGATTAAGTC Coding sequence (CDS) from alignment at sc0000002:592137..594556+ >TCONS_00000433 ID=TCONS_00000433|Name=TCONS_00000433|organism=Clytia hemisphaerica|type=CDS|length=1011bp|location=Sequence derived from alignment at sc0000002:592137..594556+ (Clytia hemisphaerica)
ATGCCAGAACTACAACATCAACAATCTTTAGAAGCAGTAACAGTTACAAC
ACCTATTACCAATCAAACTTCGCCACCACAACCAATAACAACAAACAACC
AGCATTCTGAACATGGGATCCAATTTTGTTGGTTTATCTTCAGTCTTCCT
CTTGTCAGCTCTTTCCTCTCATTCATTGCTTGTTTAATAGCATACAGAGT
GGGTGTAGATGAGAAACGCCTACAACCTTTACCTTTCATCCCATTTATCA
GTGACATCGGCGACGTCAAACCAGGATCTAGCTTCTTCACATTCTTTCTA
ATCCTTAGCAGTCTGGTGACTCTCATAATTATCACAGTCAGGTATTACCA
AGTAGCTTCCAAAGCTGAAACTGACAAGTCTAGAAACAGCTCCCCAACAG
AATTAAGAAGCAACAGGGATAACCCGTTAGAAGAAGCAAGAACCAAACGA
TCCATACAACGATTGAATACAGCAGCTTTGGTATCAAGTTGTATTTTCCT
GGTTTGTAAAATTGGTGTGTCATCTTTTCAGTTGAATaactataaaaaaa
ttcatcttggttttgcttgcttttatttttttggtgCAGCCCTTTATACT
GTTTTTCAAGTTTGTATCACTTTCAAGATGATTGGTGGTTTAAACGGACT
GAAAAAACTCCTTACAGGGGACATGTCTTCGAAGTGTCAAGGCTCTGTCt
ttttatcaagagttatctGTTCTTTGGCACttatcatcaattttttcatt
gTTGGTGTTTTTGTTACTGTACCCTCATTGAAAGTTCATAATCGTGGTGG
AGCCAATGTGGGTCAAAGTGCTGAATGGGCTTTCGctggattcaaattat
ttttcttctcGACATTTTCGTATGAATTCTGGAAAATTCGTTTCACGTTT
CTAATGAAGTTTGATGAGATTGAGAAAACGAAAACCGAAAGTTTCCCGAT
CAAAAATTGTGACACTACCGATGGGCTGCCATCGCAAGTATCATACAGCA
AACTGCAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000433-exon-sc0000002-1491911889:592137..592214 | TCONS_00000433-exon-sc0000002-1491911889:592137..592214 | Clytia hemisphaerica | exon |
| TCONS_00000433-exon-sc0000002-1510915933:592137..592214 | TCONS_00000433-exon-sc0000002-1510915933:592137..592214 | Clytia hemisphaerica | exon |
| TCONS_00000433-exon-sc0000002-1575043694:592137..592214 | TCONS_00000433-exon-sc0000002-1575043694:592137..592214 | Clytia hemisphaerica | exon |
| TCONS_00000433-exon-sc0000002-1491911889:593406..594556 | TCONS_00000433-exon-sc0000002-1491911889:593406..594556 | Clytia hemisphaerica | exon |
| TCONS_00000433-exon-sc0000002-1510915933:593406..594556 | TCONS_00000433-exon-sc0000002-1510915933:593406..594556 | Clytia hemisphaerica | exon |
| TCONS_00000433-exon-sc0000002-1575043694:593406..594556 | TCONS_00000433-exon-sc0000002-1575043694:593406..594556 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:592137..594556 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR019402 | Frag1/DRAM/Sfk1 |
Blast
The following BLAST results are available for this feature:
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