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XLOC_000108 (gene) - C. hemisphaerica

Overview
NameXLOC_000108
Unique NameXLOC_000108
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000001:996620..1005215-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_000108 ID=XLOC_000108|Name=XLOC_000108|organism=Clytia hemisphaerica|type=gene|length=8596bp|location=Sequence derived from alignment at sc0000001:996620..1005215- (Clytia hemisphaerica)
TAAACATGAAAGGGACATGTGAGATATTGACACTAAAATAATTATCAACC GTTTGATTGCAATTTAAAGATGTTATTTAAATTTGTTTATTATGCATTTA CCATTGAATTTCAAGAATCGTTAAATCCATAGGGGAATATGAAATTTACA GGGCGGAATATCGAAAGAAGCCTCAGTACAAAGTTTAGCTCGACCCAGTC CCCGGCGAACACGATGTGTTGATTCAGCAAAACTGTGTCCATCTCTTTCC ATTCAGTTGCAGTTCAGCTAACCTTGTGTTAAGTAGTTGTTTTTGGGTAT CGTCGTGTCGACGCCTAAGCCTACTTTATTTAAATGTATTGTTAAAAATT TACAAAAAAAAATTATAAAATTATAAAAAACCATAAAAAAATATATCATA TATACACGTGAAGGAAACCATCCTGAGTACACAGAGATTGCATTGCACGA GGTTTGTTTACAACGACTAGCAGTGTAACACATTTTACCAGGCGTGACAA CAACATTCGCCTCTTTATTATTATTCAAGAAGAATTTATAATCAAACTCG AAGTTTTATTTACTTGAGAACTTTACACATACAAGATGAATCAACAAGGA CAAGGTGCATCATCCGCAAACTACCCAATCGCTTCCCTGTACGTTGGTGA CTTGAGTCCAGATGTTACAGAAGCCATGCTTTTCGAGAAGTTCAGTGCTA CTGGTCCAGTGTTATCTATCCGAGTCTGTCGTGACTTGGTCACTAGACGG TCCCTTGGCTATGCTTATGTCAACTATCAACAACCTGCTGATGGTAATAT TTATTTTTGTTGTTTAAAAAGACATCTTCCATGGTTTTGCATGAATTAGA TGAAAATAATGCAGGAATTGATTAGCTATATGGTTAAAGAACGAAAAATG ATGCATGCGTGTTACAATGCAGGATTCTTTAGAGGATGATATAAATTCTG ATGCAAAAGATTTGTTATGAAATTGGAAGTAAAACAGATTTAGATTTCAT AAAATGTTATGCTGTAGTCAGTTATACTTAATTTGAGGGTGCTGACTCAG AATTGGGCTATTCCAAAAAAAAATTGTATAGGGGTATTGATAAACTTTTT TTCACTAACCCCCCTGGAAATTTTGGATAACAAACTATCCCCTGGAAATT AGGAGTCGACACCCCTGGAAAGTTAAATATTGTGAAAAAGTGCCTGGAAA GTGGCTATTGATGCCAGTGTAGGAGGAGAGAACCCCCTGGAAACCTTTAA TAACCCCCTTGGAAAATCTGAAAATGACCAAAAGCCCCTTGGAAAATCGA GGCTCAGTCCCCCCTGGAAAAGTTCGTCAATACCCCTGTATGGTTTAAAA ATAGAATAGCCCATTAGTGTTATCCAAGTTTAGGTTTAATTTTTTGTCTA TCATGTGTTCTTTTCTTTTACATTGGGCTATTCAAAAATAAAATTGTACA TGGGTATTAACAAACTTTTTACATTAACCCCTTGGAAATTGGGTCAACAC CCCTGGAAATTAAAATTTTATGAAAAAGGGGCTGGAAAATGACTAGTAAT GATGTCAGTTTAGGAAGAGAAAACCCCTTGTAGAATTAAGGCTCAAACAC CCCTGTACCGTAAGTTGGTCTAATATCAACATCCCCCGTTTAATTCCGAC ACGCTTCTTTACAGACAGGAATAATATGAAAGCTTGAATCACTGGTTTAA AAAAGGATTATTCCTCTCTGACCACTAAGCAAAGAAAAACAGTTTAAACC ATTCTATCAATTTCAGCTGATAAAAAGGGTGTCGGAATTAAGTTACGGTA TGGTTTAAAAATGGAATAGCCCATTCCAGGCTAAAATTTAAGGCCTAAAA AATTATGATTTTTGGTTTTTTTTGCCATTTGTAGATCAGAAGTTTTAGCC TTTGTTTAAAAACAAAGGAAATGGGGAATTTCCCTAAATTCTGCTTCTAA TATACGCATAATTAAAGACCTTTTTCACCACAAACATTAACAACTTTTGA TCTTAATGTCAGAAATTTTCACTGGCAGTTCAAGTTCCTTTGCTTTTATT AAAACATTGGATAAGGATAGTATTTGCTATTTTAAGCTCAAAAAAGAATT TAGTGAATTGAAGTACTTTAAATATTGTTCATGCAGCCCTGTGAATCGAG GTCGGCATTCGGCAATGCCGACTTGAAAGCCGACGTAACTTGAGCTGAAG TCGGCTTTTATTTGCTGACGTAATTTACACTCTAGGTCGGCGCGCCAACA AAAGAAATGTTTTGGTAATCTAATTGTGTTATCATTTGATAACACTTGTG CATGATAATCAAGCCTCATTCCATTCTCTTTATAAAACATAAAACTTAAT AACACAATTATAGAGCAGCTGAATTTGTTAGTTCGTTAATTTTCTTCCTA TTTTGTCTTTGCCGACCTGAACAAGCTACTTAGGACGGCTTTGCCGACCT AAAATGACCTCTAGGTCAGCAAAATTTTGCCGGCCTACGGCTCGTTTTGG TCGGCATTTAAGTGCCGATATTATTTTGTCTGAATTCACAGGGCTGTTCA TGGGAATTCAATTGCAAAAATATCTGACATTACACTTCACTTAGTAATTT CTTGTAGTACATCTTTTGCTCATTTTCAAGAGCTTTGTCATATGGTTGCA AAGTTCATTCTTGAGGCCATTGTACAGACTCATTTGGCTGTTTATCAATC CAAGTCTCTTGATTTAGTTTTTTGTTTTATTTAAAAGTAATGAAGTATGC TTTAAAGTCTGAAGTAATCTTGCAAATTTCTGATGTTTGGGCGAGACAGC ATAGCACTTTTTTTATTTAGGTAAGAACTGCATAAAATTGTAAAAAAGCA CAAAAGTTGCAATTTTTGGTCAATTTTAGACCAAAATGTGGCGAAAAGTG GAACTTGCGCATGAAATATCTCGAGTTAGGTAATGAAATCGGCCATACCC GTTTAAAAGTCTTCTGTATAGTTTTTTGAGAGCTTTCGAATGGTTTACCT GATATTGTCTGAAAATGAGTTTGAAATTTTCAAAACATTTCGCCCTTAGG GTTTTGCCTGGGGAAAAAAGAAATTGCCCAAAAAAGGGATGTTCCACCAG TGGGATTTTAGGGGATTTTTTCCTGAGGCATAAGCATCCTATAGAGAAAG TCTGGAGAAAGTTTCAGCTATATATTATTTTTTTCCTGTAAATTTATGCT AAACGACCCCACTATTAGCTTGATCTGGAAATAGTATTTGTTTTAATAAA AAACAAGAGATTATTTTGAAAATTAAAAACTTGACTTTGGAAGTAGCGAT TTTCTAGTTCCAGATTCTGGATTGAAACCTAAAGAGTGTTCAGTTAATGA AATTTTTAGAGTCATTGTACATGTCCATAATGTTTTTATTTCAATTTATT TCCAGCTGAGCGAGCCATTGATACTTTGAACTATGACCCCATCAAAGGAC GTCCGTGCCGTATCATGTGGTCTCAACGTGACCCAACTCTACGAAGATCT GGTGTTGGAAACATTTTCATCAAGAACTTGGATAAGCATATCGATCACAA AGGTCTTTATGATACCTTCAGTGCTTTTGGAAACATTCTCTCATGTAAAA TTGCTGCTGACGACAAAGGTCAATCCAAGGGCTATGGTTTTGTTCATTAT GAAACTAAAGAAGCTGCCCAAGAAGCTATCAGCAAAGTCAACGGCATGAT GTTGAACGACAAGAAAGTGTAAGTGAAACCTTTTCAGAAGCTTAACTTGG ATTAGTGAGTAGCAAGCTATTTCAAACAATTGATGACTTGTTTGGCTGTG TTTGTCTCATATCAAACATGATAATCTTGGAGTGTTCTTGGCTGACCCTT ACTATAATGGTAGTATGTGTATATATAGTATGTATGGGTTTTAATACGAT AATCAGGCTCAGGATTCAATTAAGAACTTTTTTATTGTTTTAGCATAAAA TAATGCAGTCAAAGCCAATAGAGTGCTCAATTGCAAGTAGAGTGATTTTG GTTTCCAAATGTCCTTATTATTCAAAGATATTTTGAATATATGTTTTTAC TATAAGTTTAAGTACTTCAGGTGTACAAACCTTCACAAGCAGAAACTTCC GCAAGATAGAAAAGCTGCAAAATGAATTATATACCCTTTCAAGAATTTTA AAAGACATTAACTTTTGCCAAAACGGCTAAAATCTGTCAAGATCAAGATT TTCTGCTCCCAAAAGTTTGTCACCTTAGCATATTTTTATTGGCCTGTTCA ACTCAAATTAAACTGCTTGACTTACATTCTACTTTAACTTCCGTCTGATT GTTGGCATGGTTTTATCTCTTATTTCACGGTTTCGCTCATCAACTATGAT TTTGATTGTTTACTCATTTCAGCTTTGTGGGAGAATTCATGTGTAAGAAA GAGCGTGTGGACCAGATTGGTGACCAACAAAAGAAATTTAAGAACATCTT TTGCAAGAATTTTGGAAATGAATTTACAAATGACAAACTTTTGGGATTGT TTCAAGAATTTGGAGAAATCACCAGTTGTGTTGTTATGACTGATGAGTCT GGAACAAGCAGAGGCTTTGGTTTTATTGCCTTTGAAAATCATGAAGATGC TGAAAAGGTGAGTATCCATTAAGAGGTCAAGCTATATTCAATTTGAAAAG CTCTCCAATTTTTCTTGGTCCTTTTTCAAGTTTACAAACAAACACTAAAT GGAACTGAATGTTCATTAATTTTCTTTAATTTCCTCAGGGAAAATTTAAT AAATTTCTCAAATACCACCCTTTCGGTGTTTTAGTAGCAAGTTTTTTTGG TATACCACCACATCACTAACAACACGATAGTTTGAGTCACNTCTCATATC AAACATGATAATCTTGGAGTGTTCTTGGCTGACCCTTACTATAATGGTAG TATGTGTATATATAGTATGTATGGGTTTTAATAAGATAATGAATCAGGCT CAGGATTCAATTAAGAACTTTTTTATTGTTTTAGCATAAAATAATGCAGT CAAAGCCAATAGAGTGCTCAATTGCAAGTAGAGTGATTTTGGTTTCCAAA TGTCCTTATTATTCAAAGATATTTTGAATATATGTTTTTACTATAAGTTT AAGTACTTCAGGTGTACAAACCTTCACAAGCAGAAACTTCCGCAAGATAG AAAAGCTGCAAAATGAATTATATACCCTTTCAAGAATTTTAAAAGACATT AACTTTTGCCAAAACGGCTAAAATCTGTCAAGATCAAGATTTTCTGCTCC CAAAAGTTTGTCACCTTAGCATATTTTTATTGGCCTGTTCAACTCAAATT AAACTGCTTGACTTACATTCTACTTTAACTTCCGTCTGATTGTTGGCGTG GTTTTATCTCTTATTTCACGGTTTCGCTCATCAACTATGATTTTGATTGT TTACTCATTTCAGCTTTGTGGGAGAATTCATGTGTAAGAAAGAGCGTGTG GACCAGATTGGTGACCAACAAAAGAAATTTAAGAACATCTTTTGCAAGAA TTTTGGAAATGAATTTACAAATGACAAACTTTTGGGATTGTTTCAAGAAT TTGGAGAAATCACCAGTTGTGTTGTTATGACTGACGAGTCTGGAACAAGC AGAGGCTTTGGTTTTATTGCCTTTGAAAATCATGAAGATGCTGAAAAGGT GAGTATCCATTAAGAGGTAAAGCTATATTCAATTTGAAAAGCTCTCCAAT TTTTCTTGGTCCTTTTTCAAGTTTACAAACAAACACTCAATGGAACTGAA TGTTCATTAATTTTCTTTAATTTCCTCAGGGAAAATTTAATAAATTTCTC AAATACCACCCTTTCGGTGTTTTAGTAGCAAGTTTTTTTGGTATACCACC ACATCACTAACAACACGATAGTTTGAGTCACATTTTAGTACTGTCCACCC CTGTTGAAAATAGGATGAAAATGAATAAACTGATTCTTTTTTCTCTAGGC TTGTGATGAGTTGAACAATAAGGAGATTGATGGAAACAAAATCACTTGTT GCCGTGCTCAAAAAAAAGCTGAAAGATCCATGGAATTGAAAAGCAAATTT GAACAACAAAAGAACGAGAGAATTAGCAGATATCAAGGTATCCAAGCTGA AATCTTTCGAGTGTTGTATCAAGCAGTGTTGAAATCTAGTTTTAAAGACA ACCTTTTAATTGTTATTTAATGAATTCCGCTTCGTAGGCATTTCTGCCTC TTCGAAAAGATCTTCTATAAAGTTGCTTAGAAAAAATTCGTTGTGTTAAC TTCAAAGTTCTCTTCTATCCCGTTTGGCTTCTGGAATCTTTGCATTCTTT CTCTAAGTTAGCCCTTAGATTTGATTTTTTTAAGAATGATTAATTTGTAA AACCGTGAAAGGGTAGTACTGAGATTTTGACAACAATTCATCTTCATCTG TTAATTTTCTTTCTAGGTGTTAACTTGTACATCAAGAATCTGGAAGATGG CATCGACGATGAACGTCTTCGAACTGAATTCTCTCAATTTGGAACCATCA CCAGCGCGAAAGTCATGAAAGACGACAAAGTAAATTCCAAAGGATTTGGT TTCGTTTGTTTTTCGTCTCCTGATGAAGCAACAAAAGCAGTCACAGAAAT GAACGGACGCATCATTGTCACCAAACCCTTGTATGTTGCATTGGCTCAAC GTAAGGAAGAACGTCGTGCACAATTGTCTACTCAGTTTATGCAGAGAGTT GGTCCTCTAAGATATCAACCTGGAGCCGTAAGTTGACTCTTTTCTCCTTT GGAAACTTTCTGCTTGAAACTGAATTGAATATTAATATCCACGAAACTCT TTATACATTATTTGATGTTATATATCAAAACTCATTTAGCATAGAAACAA AACTTAAAAAAAAAAATTTATGTAAAGTTCGCTTGTTTTTGCGTGTACTT TCAAGAATTTAAAATTTAAAATTTCGAGATACAATTAGGGTGCTACAAAG TTTTACGGGATGGTTTTACTAAGCCTCGTTAACGGCTTATCTCTTAAAAC TTATTTTGCCATTATTTTTCAGGGAATGCCTCAGCAACAAGGTTATTCCT TCCAGCCAGGCCAACCAAGCTTCTATATCCCAACGATGCCACAAGGTCAA CGTGCTGCCTTCATTGCTCAACCAGTGAGCCAAATGACCAGACCTCGATG GCAATCAGCAAACGTACGTCAAATGCAAGGTGGATACCCCAACCCTGGAG GAAACGTTCGCGGATCACGACCAAGACACCCCAACTCGGTCCAACCCCGA CGTGAAACACCTTACAATCAGAAATTTCAACAAGGAGGCAATATGCCAAA CCAAGTGATGCGTGCTGGTGGTCCAGTACCAAACCAAAGAGCTCAATACA AATTGAACCAAAATACACGCAATCAATACCCAGCTGGACCAGCACCTCCA GCTGTTGTCCCACAACAAGTTGCTGATCAACCAGCTCCAATGATGCCAGG AGTAAGCTAATATTGTTATTGTAGTTATCTGTTAGTGTTAAATTAGGAAG TGTAAGAACTATTGCGAATCTGACGTTTAGTCTAACCTAATGCGTTGTGC TACTTTGGAAAAATTTCCCTCGTAATTAAACTGCTAGTAACGTTGTGTTT TTGTTTTGTTTTTCAGCAACAAGAGCCATTGACTGCTTCCACTTTGGCTG GAGCCACTCCATCCGAGCAAAAGCAGATGATTGGTGAACGTCTTTTCCCC TTGGTCCAAGAACATCAACCCAAGATGGCCGGCAAGATCACTGGAATGTT GTTGGAGATCGATAATGGTGAATTGTTGAACATGTTGGAAAGTCGTGATT TGTTGAAAGATAAAGTGGGAGAAGCTGTGGCAGTACTTCAAGCTCATCAA GCTAAAGAGGCTCAAACCCAGGCTAAGACTGGTGAACAAGCCTAATTCCC TTCACACCCTAGCGTTGAGCATGCTTTGAATGGACTAAAAGAAAGTTTTA ATGGAAGATTATTTCGGAAAGTTGTGTATGTTTTGATGTTTTTTGAAGCT TTGTTGTTTTGAAAAATTTCTCTGGAGAACGTTTTTCTGCTATTCCGGCG CTGAAGAAATTTAGTTTAACTTTTATTTTTTAGTAAAGAAATACTATATA TGGAAATTTTACAGTATATTGCATAACAGGATTGATTAGGACGGTATTTA TCAGAGGTTTTAAGGATTTTTATCGTTAATGTGAAAGTTATATGAAAGGG TTAACAATGGTTTATGTGTTGATGGATCTTAAAATTTCTCTGTGCCTCTT TTAAAATCTAGTTTGCAATCAATATGTTCTTCTAATTTTCTATGTACACT TTATTTTTTCATTAAAATACATAAAATAAAAACAGACAAAAAACAAAAAG GTCATGTCGACTGTAAACTTTGCATGTTTGTATTTGGTATCGCTTGTGAA CAGTACTGAATCAATCTTCCATTTATTGTAATNTGTTTGTATTTGGTATC GCTTGTGAACAGTACTGAATCAATCTTCCATTTTTTGTAACATTGTAGTA TGGTATTATGTCATGAAAGAAGAATATAGCAGCATGCTTACACTTAACCA AACAATGCGTTTTCTATATTTTTACTTGCCAACTTTATTTGCTATT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00000186TCONS_00000186Clytia hemisphaericatranscript
TCONS_00000185TCONS_00000185Clytia hemisphaericatranscript
TCONS_00000184TCONS_00000184Clytia hemisphaericatranscript
TCONS_00000183TCONS_00000183Clytia hemisphaericatranscript
TCONS_00000182TCONS_00000182Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00000182-proteinTCONS_00000182-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:996620..1005215 -
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
PABPC3polyadenylate-binding protein 3 Homo Sapiens
PABPC4polyadenylate-binding protein 4 isoform 1 Homo Sapiens
PABPC1PREDICTED: polyadenylate-binding protein 1 isoform X1 Homo Sapiens
PABPC1LPREDICTED: polyadenylate-binding protein 1-like isoform X1 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1107.44 1119.42 325.81 255.78 1359.91 1039.92 1428.64 1533.08 2385.44 2442.11 3357.62 3135.83 3079.93 3056.45 2496.28 2739.82 2363.65 2724.31 2063.7 2263.55 2610.9 2796.32 1831.88 1941.19 2266.01 2329.84 1851.73 2028.25 1540.64 1578.86