TCONS_00000186 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00000186
Unique Name	TCONS_00000186
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3200

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000001:996620..1005215-

transcript sequence

>TCONS_00000186 ID=TCONS_00000186|Name=TCONS_00000186|organism=Clytia hemisphaerica|type=transcript|length=3200bp
TAAACATGAAAGGGACATGTGAGATATTGACACTAAAATAATTATCAACC
GTTTGATTGCAATTTAAAGATGTTATTTAAATTTGTTTATTATGCATTTA
CCATTGAATTTCAAGAATCGTTAAATCCATAGGGGAATATGAAATTTACA
GGGCGGAATATCGAAAGAAGCCTCAGTACAAAGTTTAGCTCGACCCAGTC
CCCGGCGAACACGATGTGTTGATTCAGCAAAACTGTGTCCATCTCTTTCC
ATTCAGTTGCAGTTCAGCTAACCTTGTGTTAAGTAGTTGTTTTTGGGTAT
CGTCGTGTCGACGCCTAAGCCTACTTTATTTAAATGTAttgttaaaaatt
tacaaaaaaaaattataaaattataaaaaaccataaaaaaatatatcata
taTACACGTGAAGGAAACCATCCTGAGTACACAGAGATTGCATTGCACGA
GGTTTGTTTACAACGACTAGCAGTGTAACACATTTTACCAGGCGTGACAA
CAACATTCGCCTCTTTATTATTATTCAAGAAGAATTTATAATCAAACTCG
AAGTTTTATTTACTTGAGAACTTTACACATACAAGATGAATCAACAAGGA
CAAGGTGCATCATCCGCAAACTACCCAATCGCTTCCCTGTACGTTGGTGA
CTTGAGTCCAGATGTTACAGAAGCCATGCTTTTCGAGAAGTTCAGTGCTA
CTGGTCCAGTGTTATCTATCCGAGTCTGTCGTGACTTGGTCACTAGACGG
TCCCTTGGCTATGCTTATGTCAACTATCAACAACCTGCTGATgCTGAGCG
AGCCATTGATACTTTGAACTATGACCCCATCAAAGGACGTCCGTGCCGTA
TCATGTGGTCTCAACGTGACCCAACTCTACGAAGATCTGGTGTTGGAAAC
ATTTTCATCAAGAACTTGGATAAGCATATCGATCACAAAGGTCTTTATGA
TACCTTCAGTGCTTTTGGAAACATTCTCTCATGTAAAATTGCTGCTGACG
ACAAAGGTCAATCCAAGGGCTATGGTTTTGTTCATTATGAAACTAAAGAA
GCTGCCCAAGAAGCTATCAGCAAAGTCAACGGCATGATGTTGAACGACAA
GAAAGTCTTTGTGGGAGAATTCATGTGTAAGAAAGAGCGTGTGGACCAGA
TTGGTGAccaacaaaagaaatttaagaacatcttttGCAAGAATTTTGGA
AATGAATTTACAAATGACAAACTTTTGGGATTGTTTCAAGAATTTGGAGA
AATCACCAGTTGTGTTGTTATGACTGACGAGTCTGGAACAAGCAGAGGCT
TTGGTTTTATTGCCTTTGAAAATCATGAAGATGCTGAAAAGGCTTGTGAT
GAGTTGAACAATAAGGAGATTGATGGAAACAAAATCACTTGTTGCCGTGC
TCAAAAAAAAGCTGAAAGATCCATGGAATTGAAAAGCAAATTTGAACAAC
AAAAGAACGAGAGAATTAGCAGATATCAAGGTGTTAACTTGTACATCAAG
AATCTGGAAGATGGCATCGACGATGAACGTCTTCGAACTGAATTCTCTCA
ATTTGGAACCATCACCAGCGCGAAAGTCATGAAAGACGACAAAGTAAATT
CCAAAGGATTTGGTTTCGTTTGTTTTTCGTCTCCTGATGAAGCAACAAAA
GCAGTCACAGAAATGAACGGACGCATCATTGTCACCAAACCCTTGTATGT
TGCATTGGCTCAACGTAAGGAAGAACGTCGTGCACAATTGTCTACTCAGT
TTATGCAGAGAGTTGGTCCTCTAAGATATCAACCTGGAGCCGGAATGCCT
CAGCAACAAGGTTATTCCTTCCAGCCAGGCCAACCAAGCTTCTATATCCC
AACGATGCCACAAGGTCAACGTGCTGCCTTCATTGCTCAACCAGTGAGCC
AAATGACCAGACCTCGATGGCAATCAGCAAACGTACGTCAAATGCAAGGT
GGATACCCCAACCCTGGAGGAAACGTTCGCGGATCACGACCAAGACACCC
CAACTCGGTCCAACCCCGACGTGAAACACCTTACAATCAGAAATTTCAAC
AAGGAGGCAATATGCCAAACCAAGTGATGCGTGCTGGTGGTCCAGTACCA
AACCAAAGAGCTCAATACAAATTGAACCAAAATACACGCAATCAATACCC
AGCTGGACCAGCACCTCCAGCTGTTGTCCCACAACAAGTTGCTGATCAAC
CAGCTCCAATGATGCCAGGAcaACAAGAGCCATTGACTGCTTCCACTTTG
GCTGGAGCCACTCCATCCGAGCAAAAGCAGATGATTGGTGAACGTCTTTT
CCCCTTGGTCCAAGAACATCAACCCAAGATGGCCGGCAAGATCACTGGAA
TGTTGTTGGAGATCGATAATGGTGAATTGTTGAACATGTTGGAAAGTCGT
GATTTGTTGAAAGATAAAGTGGGAGAAGCTGTGGCAGTACTTCAAGCTCA
TCAAGCTAAAGAGGCTCAAACCCAGGCTAAGACTGGTGAACAAGCCTAAT
TCCCTTCACACCCTAGCGTTGAGCATGCTTTGAATGGactaaaagaaagt
tttaatgGAAGATTATTTCGGAAAGTTGTgtatgttttgatgttttttga
agctttgttgttttgaaaaatttctctgGAGAACGTTTTTCTGCTATTCC
GGCGCTGAAGAaatttagtttaacttttattttttagtaAAGAAATacta
tatatggaaattttacAGTATATTGCATAACAGGATTGATTAGGACGGTA
TTTATCAGAggttttaaggatttttatcGTTAATGTGAAAGTTATATGAA
AGGGTTAACAATGGTTTATGTGTTGATGGATCTTAAAATTTCTCTGTGCC
TCTTTTAAAATCTAGTTTGCAATCAATATGTTCTTCTAATTTTCTATGta
cactttattttttcattaaaatacataaaataaaaacagacaaaaaacaa
aaaggtcATGTCGACTGTAAACTTTGCATGTTTGTATTTGGTATCGCTTG
TGAACAgtactgaatcaatcttccattTATTGTAATNTGTTTGTATTTGG
TATCGCTTGTGAACAgtactgaatcaatcttccattTTTTgtaacattgt
agtatggtaTTATGTCATGAAAGAAGAATATAGCAGCATGCTTACACTTA
ACCAAACAATGcgttttctatatttttactTGCCAACTTTATTTGCTATT

Run BLAST on NCBI

transcript from alignment at sc0000001:996620..1005215-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00000186 ID=TCONS_00000186|Name=TCONS_00000186|organism=Clytia hemisphaerica|type=transcript|length=8596bp|location=Sequence derived from alignment at sc0000001:996620..1005215- (Clytia hemisphaerica)
TAAACATGAAAGGGACATGTGAGATATTGACACTAAAATAATTATCAACC
GTTTGATTGCAATTTAAAGATGTTATTTAAATTTGTTTATTATGCATTTA
CCATTGAATTTCAAGAATCGTTAAATCCATAGGGGAATATGAAATTTACA
GGGCGGAATATCGAAAGAAGCCTCAGTACAAAGTTTAGCTCGACCCAGTC
CCCGGCGAACACGATGTGTTGATTCAGCAAAACTGTGTCCATCTCTTTCC
ATTCAGTTGCAGTTCAGCTAACCTTGTGTTAAGTAGTTGTTTTTGGGTAT
CGTCGTGTCGACGCCTAAGCCTACTTTATTTAAATGTATTGTTAAAAATT
TACAAAAAAAAATTATAAAATTATAAAAAACCATAAAAAAATATATCATA
TATACACGTGAAGGAAACCATCCTGAGTACACAGAGATTGCATTGCACGA
GGTTTGTTTACAACGACTAGCAGTGTAACACATTTTACCAGGCGTGACAA
CAACATTCGCCTCTTTATTATTATTCAAGAAGAATTTATAATCAAACTCG
AAGTTTTATTTACTTGAGAACTTTACACATACAAGATGAATCAACAAGGA
CAAGGTGCATCATCCGCAAACTACCCAATCGCTTCCCTGTACGTTGGTGA
CTTGAGTCCAGATGTTACAGAAGCCATGCTTTTCGAGAAGTTCAGTGCTA
CTGGTCCAGTGTTATCTATCCGAGTCTGTCGTGACTTGGTCACTAGACGG
TCCCTTGGCTATGCTTATGTCAACTATCAACAACCTGCTGATGGTAATAT
TTATTTTTGTTGTTTAAAAAGACATCTTCCATGGTTTTGCATGAATTAGA
TGAAAATAATGCAGGAATTGATTAGCTATATGGTTAAAGAACGAAAAATG
ATGCATGCGTGTTACAATGCAGGATTCTTTAGAGGATGATATAAATTCTG
ATGCAAAAGATTTGTTATGAAATTGGAAGTAAAACAGATTTAGATTTCAT
AAAATGTTATGCTGTAGTCAGTTATACTTAATTTGAGGGTGCTGACTCAG
AATTGGGCTATTCCAAAAAAAAATTGTATAGGGGTATTGATAAACTTTTT
TTCACTAACCCCCCTGGAAATTTTGGATAACAAACTATCCCCTGGAAATT
AGGAGTCGACACCCCTGGAAAGTTAAATATTGTGAAAAAGTGCCTGGAAA
GTGGCTATTGATGCCAGTGTAGGAGGAGAGAACCCCCTGGAAACCTTTAA
TAACCCCCTTGGAAAATCTGAAAATGACCAAAAGCCCCTTGGAAAATCGA
GGCTCAGTCCCCCCTGGAAAAGTTCGTCAATACCCCTGTATGGTTTAAAA
ATAGAATAGCCCATTAGTGTTATCCAAGTTTAGGTTTAATTTTTTGTCTA
TCATGTGTTCTTTTCTTTTACATTGGGCTATTCAAAAATAAAATTGTACA
TGGGTATTAACAAACTTTTTACATTAACCCCTTGGAAATTGGGTCAACAC
CCCTGGAAATTAAAATTTTATGAAAAAGGGGCTGGAAAATGACTAGTAAT
GATGTCAGTTTAGGAAGAGAAAACCCCTTGTAGAATTAAGGCTCAAACAC
CCCTGTACCGTAAGTTGGTCTAATATCAACATCCCCCGTTTAATTCCGAC
ACGCTTCTTTACAGACAGGAATAATATGAAAGCTTGAATCACTGGTTTAA
AAAAGGATTATTCCTCTCTGACCACTAAGCAAAGAAAAACAGTTTAAACC
ATTCTATCAATTTCAGCTGATAAAAAGGGTGTCGGAATTAAGTTACGGTA
TGGTTTAAAAATGGAATAGCCCATTCCAGGCTAAAATTTAAGGCCTAAAA
AATTATGATTTTTGGTTTTTTTTGCCATTTGTAGATCAGAAGTTTTAGCC
TTTGTTTAAAAACAAAGGAAATGGGGAATTTCCCTAAATTCTGCTTCTAA
TATACGCATAATTAAAGACCTTTTTCACCACAAACATTAACAACTTTTGA
TCTTAATGTCAGAAATTTTCACTGGCAGTTCAAGTTCCTTTGCTTTTATT
AAAACATTGGATAAGGATAGTATTTGCTATTTTAAGCTCAAAAAAGAATT
TAGTGAATTGAAGTACTTTAAATATTGTTCATGCAGCCCTGTGAATCGAG
GTCGGCATTCGGCAATGCCGACTTGAAAGCCGACGTAACTTGAGCTGAAG
TCGGCTTTTATTTGCTGACGTAATTTACACTCTAGGTCGGCGCGCCAACA
AAAGAAATGTTTTGGTAATCTAATTGTGTTATCATTTGATAACACTTGTG
CATGATAATCAAGCCTCATTCCATTCTCTTTATAAAACATAAAACTTAAT
AACACAATTATAGAGCAGCTGAATTTGTTAGTTCGTTAATTTTCTTCCTA
TTTTGTCTTTGCCGACCTGAACAAGCTACTTAGGACGGCTTTGCCGACCT
AAAATGACCTCTAGGTCAGCAAAATTTTGCCGGCCTACGGCTCGTTTTGG
TCGGCATTTAAGTGCCGATATTATTTTGTCTGAATTCACAGGGCTGTTCA
TGGGAATTCAATTGCAAAAATATCTGACATTACACTTCACTTAGTAATTT
CTTGTAGTACATCTTTTGCTCATTTTCAAGAGCTTTGTCATATGGTTGCA
AAGTTCATTCTTGAGGCCATTGTACAGACTCATTTGGCTGTTTATCAATC
CAAGTCTCTTGATTTAGTTTTTTGTTTTATTTAAAAGTAATGAAGTATGC
TTTAAAGTCTGAAGTAATCTTGCAAATTTCTGATGTTTGGGCGAGACAGC
ATAGCACTTTTTTTATTTAGGTAAGAACTGCATAAAATTGTAAAAAAGCA
CAAAAGTTGCAATTTTTGGTCAATTTTAGACCAAAATGTGGCGAAAAGTG
GAACTTGCGCATGAAATATCTCGAGTTAGGTAATGAAATCGGCCATACCC
GTTTAAAAGTCTTCTGTATAGTTTTTTGAGAGCTTTCGAATGGTTTACCT
GATATTGTCTGAAAATGAGTTTGAAATTTTCAAAACATTTCGCCCTTAGG
GTTTTGCCTGGGGAAAAAAGAAATTGCCCAAAAAAGGGATGTTCCACCAG
TGGGATTTTAGGGGATTTTTTCCTGAGGCATAAGCATCCTATAGAGAAAG
TCTGGAGAAAGTTTCAGCTATATATTATTTTTTTCCTGTAAATTTATGCT
AAACGACCCCACTATTAGCTTGATCTGGAAATAGTATTTGTTTTAATAAA
AAACAAGAGATTATTTTGAAAATTAAAAACTTGACTTTGGAAGTAGCGAT
TTTCTAGTTCCAGATTCTGGATTGAAACCTAAAGAGTGTTCAGTTAATGA
AATTTTTAGAGTCATTGTACATGTCCATAATGTTTTTATTTCAATTTATT
TCCAGCTGAGCGAGCCATTGATACTTTGAACTATGACCCCATCAAAGGAC
GTCCGTGCCGTATCATGTGGTCTCAACGTGACCCAACTCTACGAAGATCT
GGTGTTGGAAACATTTTCATCAAGAACTTGGATAAGCATATCGATCACAA
AGGTCTTTATGATACCTTCAGTGCTTTTGGAAACATTCTCTCATGTAAAA
TTGCTGCTGACGACAAAGGTCAATCCAAGGGCTATGGTTTTGTTCATTAT
GAAACTAAAGAAGCTGCCCAAGAAGCTATCAGCAAAGTCAACGGCATGAT
GTTGAACGACAAGAAAGTGTAAGTGAAACCTTTTCAGAAGCTTAACTTGG
ATTAGTGAGTAGCAAGCTATTTCAAACAATTGATGACTTGTTTGGCTGTG
TTTGTCTCATATCAAACATGATAATCTTGGAGTGTTCTTGGCTGACCCTT
ACTATAATGGTAGTATGTGTATATATAGTATGTATGGGTTTTAATACGAT
AATCAGGCTCAGGATTCAATTAAGAACTTTTTTATTGTTTTAGCATAAAA
TAATGCAGTCAAAGCCAATAGAGTGCTCAATTGCAAGTAGAGTGATTTTG
GTTTCCAAATGTCCTTATTATTCAAAGATATTTTGAATATATGTTTTTAC
TATAAGTTTAAGTACTTCAGGTGTACAAACCTTCACAAGCAGAAACTTCC
GCAAGATAGAAAAGCTGCAAAATGAATTATATACCCTTTCAAGAATTTTA
AAAGACATTAACTTTTGCCAAAACGGCTAAAATCTGTCAAGATCAAGATT
TTCTGCTCCCAAAAGTTTGTCACCTTAGCATATTTTTATTGGCCTGTTCA
ACTCAAATTAAACTGCTTGACTTACATTCTACTTTAACTTCCGTCTGATT
GTTGGCATGGTTTTATCTCTTATTTCACGGTTTCGCTCATCAACTATGAT
TTTGATTGTTTACTCATTTCAGCTTTGTGGGAGAATTCATGTGTAAGAAA
GAGCGTGTGGACCAGATTGGTGACCAACAAAAGAAATTTAAGAACATCTT
TTGCAAGAATTTTGGAAATGAATTTACAAATGACAAACTTTTGGGATTGT
TTCAAGAATTTGGAGAAATCACCAGTTGTGTTGTTATGACTGATGAGTCT
GGAACAAGCAGAGGCTTTGGTTTTATTGCCTTTGAAAATCATGAAGATGC
TGAAAAGGTGAGTATCCATTAAGAGGTCAAGCTATATTCAATTTGAAAAG
CTCTCCAATTTTTCTTGGTCCTTTTTCAAGTTTACAAACAAACACTAAAT
GGAACTGAATGTTCATTAATTTTCTTTAATTTCCTCAGGGAAAATTTAAT
AAATTTCTCAAATACCACCCTTTCGGTGTTTTAGTAGCAAGTTTTTTTGG
TATACCACCACATCACTAACAACACGATAGTTTGAGTCACNTCTCATATC
AAACATGATAATCTTGGAGTGTTCTTGGCTGACCCTTACTATAATGGTAG
TATGTGTATATATAGTATGTATGGGTTTTAATAAGATAATGAATCAGGCT
CAGGATTCAATTAAGAACTTTTTTATTGTTTTAGCATAAAATAATGCAGT
CAAAGCCAATAGAGTGCTCAATTGCAAGTAGAGTGATTTTGGTTTCCAAA
TGTCCTTATTATTCAAAGATATTTTGAATATATGTTTTTACTATAAGTTT
AAGTACTTCAGGTGTACAAACCTTCACAAGCAGAAACTTCCGCAAGATAG
AAAAGCTGCAAAATGAATTATATACCCTTTCAAGAATTTTAAAAGACATT
AACTTTTGCCAAAACGGCTAAAATCTGTCAAGATCAAGATTTTCTGCTCC
CAAAAGTTTGTCACCTTAGCATATTTTTATTGGCCTGTTCAACTCAAATT
AAACTGCTTGACTTACATTCTACTTTAACTTCCGTCTGATTGTTGGCGTG
GTTTTATCTCTTATTTCACGGTTTCGCTCATCAACTATGATTTTGATTGT
TTACTCATTTCAGCTTTGTGGGAGAATTCATGTGTAAGAAAGAGCGTGTG
GACCAGATTGGTGACCAACAAAAGAAATTTAAGAACATCTTTTGCAAGAA
TTTTGGAAATGAATTTACAAATGACAAACTTTTGGGATTGTTTCAAGAAT
TTGGAGAAATCACCAGTTGTGTTGTTATGACTGACGAGTCTGGAACAAGC
AGAGGCTTTGGTTTTATTGCCTTTGAAAATCATGAAGATGCTGAAAAGGT
GAGTATCCATTAAGAGGTAAAGCTATATTCAATTTGAAAAGCTCTCCAAT
TTTTCTTGGTCCTTTTTCAAGTTTACAAACAAACACTCAATGGAACTGAA
TGTTCATTAATTTTCTTTAATTTCCTCAGGGAAAATTTAATAAATTTCTC
AAATACCACCCTTTCGGTGTTTTAGTAGCAAGTTTTTTTGGTATACCACC
ACATCACTAACAACACGATAGTTTGAGTCACATTTTAGTACTGTCCACCC
CTGTTGAAAATAGGATGAAAATGAATAAACTGATTCTTTTTTCTCTAGGC
TTGTGATGAGTTGAACAATAAGGAGATTGATGGAAACAAAATCACTTGTT
GCCGTGCTCAAAAAAAAGCTGAAAGATCCATGGAATTGAAAAGCAAATTT
GAACAACAAAAGAACGAGAGAATTAGCAGATATCAAGGTATCCAAGCTGA
AATCTTTCGAGTGTTGTATCAAGCAGTGTTGAAATCTAGTTTTAAAGACA
ACCTTTTAATTGTTATTTAATGAATTCCGCTTCGTAGGCATTTCTGCCTC
TTCGAAAAGATCTTCTATAAAGTTGCTTAGAAAAAATTCGTTGTGTTAAC
TTCAAAGTTCTCTTCTATCCCGTTTGGCTTCTGGAATCTTTGCATTCTTT
CTCTAAGTTAGCCCTTAGATTTGATTTTTTTAAGAATGATTAATTTGTAA
AACCGTGAAAGGGTAGTACTGAGATTTTGACAACAATTCATCTTCATCTG
TTAATTTTCTTTCTAGGTGTTAACTTGTACATCAAGAATCTGGAAGATGG
CATCGACGATGAACGTCTTCGAACTGAATTCTCTCAATTTGGAACCATCA
CCAGCGCGAAAGTCATGAAAGACGACAAAGTAAATTCCAAAGGATTTGGT
TTCGTTTGTTTTTCGTCTCCTGATGAAGCAACAAAAGCAGTCACAGAAAT
GAACGGACGCATCATTGTCACCAAACCCTTGTATGTTGCATTGGCTCAAC
GTAAGGAAGAACGTCGTGCACAATTGTCTACTCAGTTTATGCAGAGAGTT
GGTCCTCTAAGATATCAACCTGGAGCCGTAAGTTGACTCTTTTCTCCTTT
GGAAACTTTCTGCTTGAAACTGAATTGAATATTAATATCCACGAAACTCT
TTATACATTATTTGATGTTATATATCAAAACTCATTTAGCATAGAAACAA
AACTTAAAAAAAAAAATTTATGTAAAGTTCGCTTGTTTTTGCGTGTACTT
TCAAGAATTTAAAATTTAAAATTTCGAGATACAATTAGGGTGCTACAAAG
TTTTACGGGATGGTTTTACTAAGCCTCGTTAACGGCTTATCTCTTAAAAC
TTATTTTGCCATTATTTTTCAGGGAATGCCTCAGCAACAAGGTTATTCCT
TCCAGCCAGGCCAACCAAGCTTCTATATCCCAACGATGCCACAAGGTCAA
CGTGCTGCCTTCATTGCTCAACCAGTGAGCCAAATGACCAGACCTCGATG
GCAATCAGCAAACGTACGTCAAATGCAAGGTGGATACCCCAACCCTGGAG
GAAACGTTCGCGGATCACGACCAAGACACCCCAACTCGGTCCAACCCCGA
CGTGAAACACCTTACAATCAGAAATTTCAACAAGGAGGCAATATGCCAAA
CCAAGTGATGCGTGCTGGTGGTCCAGTACCAAACCAAAGAGCTCAATACA
AATTGAACCAAAATACACGCAATCAATACCCAGCTGGACCAGCACCTCCA
GCTGTTGTCCCACAACAAGTTGCTGATCAACCAGCTCCAATGATGCCAGG
AGTAAGCTAATATTGTTATTGTAGTTATCTGTTAGTGTTAAATTAGGAAG
TGTAAGAACTATTGCGAATCTGACGTTTAGTCTAACCTAATGCGTTGTGC
TACTTTGGAAAAATTTCCCTCGTAATTAAACTGCTAGTAACGTTGTGTTT
TTGTTTTGTTTTTCAGCAACAAGAGCCATTGACTGCTTCCACTTTGGCTG
GAGCCACTCCATCCGAGCAAAAGCAGATGATTGGTGAACGTCTTTTCCCC
TTGGTCCAAGAACATCAACCCAAGATGGCCGGCAAGATCACTGGAATGTT
GTTGGAGATCGATAATGGTGAATTGTTGAACATGTTGGAAAGTCGTGATT
TGTTGAAAGATAAAGTGGGAGAAGCTGTGGCAGTACTTCAAGCTCATCAA
GCTAAAGAGGCTCAAACCCAGGCTAAGACTGGTGAACAAGCCTAATTCCC
TTCACACCCTAGCGTTGAGCATGCTTTGAATGGACTAAAAGAAAGTTTTA
ATGGAAGATTATTTCGGAAAGTTGTGTATGTTTTGATGTTTTTTGAAGCT
TTGTTGTTTTGAAAAATTTCTCTGGAGAACGTTTTTCTGCTATTCCGGCG
CTGAAGAAATTTAGTTTAACTTTTATTTTTTAGTAAAGAAATACTATATA
TGGAAATTTTACAGTATATTGCATAACAGGATTGATTAGGACGGTATTTA
TCAGAGGTTTTAAGGATTTTTATCGTTAATGTGAAAGTTATATGAAAGGG
TTAACAATGGTTTATGTGTTGATGGATCTTAAAATTTCTCTGTGCCTCTT
TTAAAATCTAGTTTGCAATCAATATGTTCTTCTAATTTTCTATGTACACT
TTATTTTTTCATTAAAATACATAAAATAAAAACAGACAAAAAACAAAAAG
GTCATGTCGACTGTAAACTTTGCATGTTTGTATTTGGTATCGCTTGTGAA
CAGTACTGAATCAATCTTCCATTTATTGTAATNTGTTTGTATTTGGTATC
GCTTGTGAACAGTACTGAATCAATCTTCCATTTTTTGTAACATTGTAGTA
TGGTATTATGTCATGAAAGAAGAATATAGCAGCATGCTTACACTTAACCA
AACAATGCGTTTTCTATATTTTTACTTGCCAACTTTATTTGCTATT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000108	XLOC_000108	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000001	supercontig	sc0000001:996620..1005215 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
167.304	170.17	47.3775	40.4133	375.347	264.143	382.608	422.497	487.024	535.124	838.731	686.647	663.994	746.636	488.676	535.242	477.748	532.722	442.115	433.364	415.362	454.349	266.904	284.632	546.63	676.954	283.513	292.05	229.332	237.336

Blast

[Close]

BLAST of TCONS_00000186 vs. Swiss-Prot (Human)
Match: PABP1 (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 718.768 bits (1854), Expect = 0.000e+0
Identity = 384/646 (59.44%), Postives = 465/646 (71.98%), Query Frame = 1

Query:  610 SSANYPIASLYVGDLSPDVTEAMLFEKFSATGPVLSIRVCRDLVTRRSLGYAYVNYQQPADAERAIDTLNYDPIKGRPCRIMWSQRDPTLRRSGVGNIFIKNLDKHIDHKGLYDTFSAFGNILSCKIAADDKGQSKGYGFVHYETKEAAQEAISKVNGMMLNDKKVFVGEFMCKKERVDQIGDQQKKFKNIFCKNFGNEFTNDKLLGLFQEFGEITSCVVMTDESGTSRGFGFIAFENHEDAEKACDELNNKEIDGNKITCCRAQKKAERSMELKSKFEQQKNERISRYQGVNLYIKNLEDGIDDERLRTEFSQFGTITSAKVMKDDKVNSKGFGFVCFSSPDEATKAVTEMNGRIIVTKPLYVALAQRKEERRAQLSTQFMQRVGPLRYQPGAGMPQQQGYSFQPGQPS-FYIPTMPQGQ-RAAFIAQPVSQMTR----PRWQSANVRQMQGGYPNP----GGNVRGSRPRHP-NSVQP-RRETPYNQKFQQGGNMPNQVMRAGGPVPNQRA-----------QYKLNQNTRNQYXXXXXXXXXXXXXXXXXXXXMMPGQQEPLTASTLAGATPSEQKQMIGERLFPLVQEHQPKMAGKITGMLLEIDNGELLNMLESRDLLKDKVGEAVAVLQAHQAKEAQTQA 2478
            S+ +YP+ASLYVGDL PDVTEAML+EKFS  GP+LSIRVCRD++TRRSLGYAYVN+QQPADAERA+DT+N+D IKG+P RIMWSQRDP+LR+SGVGNIFIKNLDK ID+K LYDTFSAFGNILSCK+  D+ G SKGYGFVH+ET+EAA+ AI K+NGM+LND+KVFVG F  +KER  ++G + K+F N++ KNFG +  +++L  LF +FG   S  VMTDESG S+GFGF++FE HEDA+KA DE+N KE++G +I   RAQKK ER  ELK KFEQ K +RI+RYQGVNLY+KNL+DGIDDERLR EFS FGTITSAKVM +    SKGFGFVCFSSP+EATKAVTEMNGRI+ TKPLYVALAQRKEER+A L+ Q+MQR+  +R      +P      +QP  PS +++  +PQ Q RAA+   P SQ+ +    PRW +      QG  P+P     G +R + PR P ++++P   + P     Q+  N   Q M   GP P   A           QYK     RN      A P V  QQ A          QEPLTAS LA A P EQKQM+GERLFPL+Q   P +AGKITGMLLEIDN ELL+MLES + L+ KV EAVAVLQAHQAKEA  +A
Sbjct:    4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG-RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVR-----AVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPSQIAQLRPSPRWTA------QGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTM---GPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQG-----QEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA 626

HSP 2 Score: 168.318 bits (425), Expect = 3.297e-43
Identity = 100/298 (33.56%), Postives = 160/298 (53.69%), Query Frame = 1

Query:  868 DPTLRRSGVGNIFIKNLDKHIDHKGLYDTFSAFGNILSCKIAAD-DKGQSKGYGFVHYETKEAAQEAISKVNGMMLNDKKVFVGEFMCKKERVDQIGDQQKKFKNIFCKNFGNEFTNDKLLGLFQEFGEITSCVVMTDESGTSRGFGFIAFENHEDAEKACDELNNKEIDGNKITCCRAQKKAERSMELKSKFEQQKNERISRYQGVNLYIKNLEDGIDDERLRTEFSQFGTITSAKVMKDDKVNSKGFGFVCFSSPDEATKAVTEMNGRIIVTKPLYVALAQRKEERRAQLSTQFMQ 1758
            +P+     + ++++ +L   +    LY+ FS  G ILS ++  D    +S GY +V+++    A+ A+  +N  ++  K V +       +R   +  ++    NIF KN      N  L   F  FG I SC V+ DE+G S+G+GF+ FE  E AE+A +++N   ++  K+   R + + ER  EL ++ +          +  N+YIKN  + +DDERL+  F +FG   S KVM D+   SKGFGFV F   ++A KAV EMNG+ +  K +YV  AQ+K ER+ +L  +F Q
Sbjct:    2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MWSQRDPSL--RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK----------EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282

The following BLAST results are available for this feature:

BLAST of TCONS_00000186 vs. Swiss-Prot (Human)

BLAST of TCONS_00000186 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
PABP1	3.297e-43	59.44	Polyadenylate-binding protein 1 OS=Homo sapiens GN...	[more]

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TCONS_00000186 (transcript) - C. hemisphaerica

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