XLOC_000048 (gene) - C. hemisphaerica

Overview
NameXLOC_000048
Unique NameXLOC_000048
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000001:1846916..1852957+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_000048 ID=XLOC_000048|Name=XLOC_000048|organism=Clytia hemisphaerica|type=gene|length=6042bp|location=Sequence derived from alignment at sc0000001:1846916..1852957+ (Clytia hemisphaerica)
ctttcagtcgaaaagtaaaagaaacaaacaaaaaagaaaacacaatgAAG GACATAACATACCATCAATTTAAAGACAAAGAATTATTTTGATATTCTAC AGGTTTTTTATGTTTGACCctattttataatttattcTTCATACAATTTT GCCCTTGATGCTTTCTAGGCTCCACTCTTTCCAATTCTAGGGAAATTTTT GCTATAATATTTGTACATTTCACAAATTTATGCCTCTGAAAGCAGCCAGT TTGAAAcgcaggtcaacaggtcacaggtcaacagggcACAGGACATAGAC ACAGGTCATACacacaggtcatacaaactacagaACAGAAAAGTATAACT TACTTCTAGCATAATTTATAAcatgtttcttaaaatattATATGCAATGT TGTAAGCTATTTAGAACATTCAAGGACAAATCACTAACCCCAAGTATGTT TTAGGATCCTTAGTAGGATCCTGGCTGTGTGAGTGGATATAGTTTGGGCt tcttcagaaaaaaattgaatatgaggGGGTGTggggaggatataacattt tttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNccccccccccccccaaacattgaattttG TCTGAAAACACcttgcacctgaaaacctcaaattttgcacctgcACTTGA CTTTTTCCGATTTGTGCACTCAAGATCTCAAGCAAACGTGCCACATTCTG CAAACTGGGTTTGCCtctaaaacaaggcaaattttgcagacTTTTCAGTA CCCCCTTAAAAATGTTCTAGATCAATATACCTCCAGTATGATATTTTTGA CAATAAgtgttttcaaacattttctttttgctttttttaataattaaagc tgacctgtgtcaataacctgtgacctgttgacctctTAAAGTTGATTTTC ACATTCAGAatttcacttcattttattcacacaattttgttttgattttc atgcATTCACCAAATGATACAAGCTTGTGTGTGTTTTCATGCAAGCTGCT TTAGGGCCTGAAATAGATTTCAACTATCATATCTCCTAACCAATCCTAAC ATTATACCTGACATTTGCTTActatttttaaacaaacaaagaaaatttgt ttcTCTATTCCTGCCACTCAAGCACAAAATGTTTAGAATATCTCTTTTAT TCTGCTTTTTCAGCATAGAGGTGTGCCTCCTTTGTATATCATATGAAAGA ATATCTATAATCTAAGATTTCATTTATTTCTAGTTTTAAAAActtgttat ttttcattataAGAATGGAGAAGACAAATGACAGAATTGAATCTTCCGCT GATTTTCAAGGGGCTTTTCTTGATGCTATCGAGAAACTCGGGGATGCAGA CTGTTCCCAGAAAGATTATGATCATTTTGTTGAGCTATGTAAGAAAATGA CTGATGCAGATTTCCTGtgcaaaattattgaaaagctCCTGAATTGGCTA CCTGGTAAAAATCGAGAAGTTTGTTTTATTGAAATGCTAACTTCATTACT TGAAGCGTTATTTGATTTGTTAAACTCTAAAGCTTATAGTGATGTTTATC CAGCAATGCTGGAAAAAGATTCCTTGTACCCTATTGTTCTTATGCTTTTT GGGACCAAGTGGCTGTTTCGTCCAGAAATCTTGACAAAATTCATATCCAA TCGATTTGTTCAAGAACCTTTGACTGTCGAAATCATTTTATGGGGTTTAC TCAGAAAGGATTGTTTTAGTAAAAAAGAGTTAAAATCTAATGATGATTTT TGTACATTGTTACGGCATTTTGGCAAGGTTACTATTGAGAATGACAGAGC TCAAGTTCATCGTTTTTacaaaacaatgatccaatttttaatcaagaatt aCGATTGGGTATTGGCAAAGGAGCTTGTACCTTTAGTGCTTAATATTTCA GATCACAATGAAGATTTTGGGTGTTTCTTTGAACTCTTCGAAGGCATGGA ATCATTGAAATCTGAACAAATCAAAATACTTGTTCAAAGTGGTATTTCAT TTTTCGCAAAGGCTGTTTCTCGTGAAAAATTGTATGGTTTTGGGTCTACT GAAGAATCAGAGTACGAAAGTATGTTGAAGtatgtaaaaattattttcaa ggaTGACTTTTATTATGATATAGCAAAACAGCTGATAGCCCTTGACCAGT TCAAGTCCAAAGATCACGAGAAGATATACAACACAAATAAAAAGAGCATT TTGCAAAGACTGATCCATGATTTAAAAAAGGATTTCTATTACAATGAAAT TTACATTGATCTAGTACGTGTTCAGATTGAAAATCTAAAGCCACTACAAG ACAAAGGGTGTCCGAAATTGTTTTGGGAGCAGCCAGATGCCGTGTTTGGT TATGACGTAGGTATTGAAGAATTTTTAGAAAGTGATAAAGTGAGGCTAGT TGTATCTGATGACTTTGAAAACGACTTGGAAATTGCACATGCGTGGATCA ATGATCACGCTGGACAATATCTTGAAGATGGTTATAGCTTTTCTGCGGTG GCAAGGCTATCTACGGAAGGCACAGTTGAAGTTATACTGCAAAAAGAACA TCATATTTGGGAAAGGAAACGAGNGAAGGCACAGTTGAAGTTATACTGCA AAAAGAACGTCATATTTGGGAAAGGAAACGAGATGGATATTTTAAGCTGA TGAATGAATTGGTAGATTTGGAAACTTTCTTGCAGTGCCCAAAATTAATG CGTCTGGGCaccaaaagaaaatataatctCAGACAAAGAGAAAGAAATTA GATGGTCTTCAAATTTCACTTTGAATTACCACTTTTGTCAATAGACTTTA ATGTATTACTTTAAATTTGACAGAATTGAATTTTAAGACTCATTTATTTG GCTGACGGCTGACAAAAGTACCATGTTTTTATTAGAAAAAGACTTATTTC AAGTCCGTAAATAGCAAGAATTTGGAAGATATATATAAAACGAgttaaat ttggctgaaaaaaaaaaatttgcagtgTGTTTTGGGAAAATCTGccaaat ttaccaaattttctttctgccaaattttttttcctattGTGAAGTGTAgc ttattttaaaaaattttctcttcACTTTTCTGCTTGAATGGAGATTTTCC TAGTGTAACAATTGATATATTCTTGTTTTGAGGGCcttataggggggggg ggtaccaagATTTGCCAAGAAAATGGGGGATGGAAATGTAGGGGATCata agaaaggggggggggttggaatatttttaaaaatttttttttttttttcg agggGCAttataggggggggggtaccaagATTTGCCAAGAAAATGGGGGA TGGAAATGTAGGGTGTCataagaaaggggggggggttggaaatgtttggt caattttttattcatatACAAAATGGTCACAATGGGACCATTGTCTCGTT TTATTGCAAAATTCGAAACATTCTTATATTACCTTATTTCTGTAAAATAA GGTAATAAAAGACTTCATTACAGAAAGGGGGATGGGTATAaagggggatg aaataaacctagggggtcATACCCCTACTACAAACTTTTGCACTCTTAGT CTAAATTTGACCTTAAATTGTTCCTATTAAAGCCAGTATATCTATTCATG GGTCGGTTTGCTAATTCTGCAAAAACATTCCTTTAGCTTCATTAAATAGA ATATTGTATTTTAGATATTTTGGAAATGATAAAAATCCAATTATTCGAAC AAAAGTCAACTTTATCTTTCTCGTTAAATCCACGCTCTCTTGCTTTACTT ACATAGAAATACTAACATtgattatttgtttttatttttcagcaaaaaat aaaaaaaacattgagacaaaaacaaaaaagaaattatcatTGTCATAGAg ggtaaaacttttttttaccaTTCACTAAAATGACAGTTTGTCTACACgtt ttgttttttggacctacctggaggtcctataaattaacctgtgtttgttc gtctgttaccaacttttttcTGGATCgaatcataggaattttgcgatttt tggtatttttaaaggtgcaaaatggtgataaCCAAAAtttgacggagccc gatttttgaaaaaaaatatttttgttaaaaatctgttctttagtttttcc taaatttttgtataaagacATAGAATTACAGTGTGCTGAATatgaaaaag ttcatttttcgaaaaaaaaaatttggcaccaactttcaaaattttaaatt attcagtTTTTGTTTCTACATTGCCTTCATTAAACtgttattattcgttt tataaacaggtaggtccataaaagtatcacttgttttttttttcataaga acatctaaaaattttgaaaccttgggacgttcttaactttttgagttttt ttaagcctaaaaattgttcttcaccattttttgagttatTTCATAACAAG AATGGAAAGTCAAACgaaggaaaaaaatcataatgattaTCAAAAAGACT TTTGGGATGCTGCCCAACAACTTCATATATCTAACTGCTCCAAGGAAGAT TATGAACGTTTTGTAGACAAATGTAAGACATTGACAGATCCGCAGTTCTT GTCCGAAATCACCGAATATCTCTTGGGAAGACTTCGATACGTATATGAGG AAGTTGATTCTACTAAGATGTTAACTTCATTAATGGAAAAGTTGATGAAC TTATTAAACTCCAAATCTTACAGCAAAATTAAACCTGTGAAAGTCGATTC TATGTATGCTAGTATTCTATTGCTTTTTGGTGTCGAACACTCAATGTTCA ATTCAAAGATTCTAACCAAATTCATTCTGGCAAGTTTGATGTCAAAATCA ATATCAGATGGACGCGTTCTTGGAGCAATGACTTTGGAATTCATTCTATC AGGGTTTATCAAAAATGCTTGTTTTGATATAGAGGAATGGAAATCTAACG ATATTTTTTGTACCTTACTGCGCCATTTTGGAAAGgctatttctaaaaat aaccGATCTCAAATACTTCCTTTTTATAGAATAatcattcattttttcat caataACCAAGATTGGGTGTTGGTTAAGGACATCTTGCCAACAGTGCTTG ATATCTCAAATCACAAACAAAACTTTAGTGAATATATTGAACTATTTGAA GGCTTGGACTCAGTTGATGCAGAGCGTCTCAATGTTCTCGTTCAATGTGG TGTTCCATTTTTTGCGGAGGTTCTGCATCGTGAGTCCTTGAGCGTTATTG GATCTACCAGAGATGCAGAATATGAAAGCATGCTGAAATAtgtaaaaatg attttcaaagaTGATTTTTATTCAGATACAGCTAAAAAACTGATAGAACT CGATGAAATGAAGACCAAAGATGATAACAAAATGTGCAACGCTGATGGGA AAAGTATTTTGCAAAGACTGATCATTGATTTAAAAACAGAATTTTATCAT CATGATTTTTATATTGATCTAGTTCGTGTTCAAATACAAAACCTAAAGCA TCTACAAGTTAAAGGATGTCCAAAATTTTCATGGGAACAACCGGATGCTA GATTCAATCGAAACACAAACATTCAAGATTTTCTGCACAGTAACAAAGTA ACGTTGAAATTAATTGGTAGAAATATCTTTGTTAACAATCTTGAAATCGC ACACTTTTGGATTAATGATTGGGCGCAACCACATATTGGACTTGGTTTTA GTTTTACTGCGGTCGCAAGGTTATCAACGGAAGGCACAGTTGAAATTATA CTgcaaaaagaacgacatatttatGAAAGGAAAAGAGATGGATATTTTAA GCTGATGAATGAATTGGTAGATTTGGAAACTTTCTTGCAGTCTCAAAATA TGATACATACTGGTACCAAACGAAAGTACAATATCGGAGAGGAAAATAGA AACTGAATATTCTTACTTGAAAACTCGATTGATCATGGAGACCAAAGCTT TGGCATTCAATGGTTCGTTGTGTGTCAATTTTGTGCACTCTT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00000094TCONS_00000094Clytia hemisphaericatranscript
TCONS_00000095TCONS_00000095Clytia hemisphaericatranscript
TCONS_00000096TCONS_00000096Clytia hemisphaericatranscript
TCONS_00000097TCONS_00000097Clytia hemisphaericatranscript
TCONS_00000098TCONS_00000098Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00000095-proteinTCONS_00000095-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1846916..1852957 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.47 20.72 13.04 9.61 25.47 15.48 14.62 15.46 8.98 9.72 7.65 6.71 6.73 6.66 8.44 9.02 8.8 10.37 5.68 4.68 10.71 10.74 21.79 22.3 5.73 7.59 7.53 4.3 9.56 11.57