TCONS_00000097 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000097
Unique NameTCONS_00000097
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1581

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000097 ID=TCONS_00000097|Name=TCONS_00000097|organism=Clytia hemisphaerica|type=transcript|length=1581bp
AGAATATCTATAATCTAAGATTTCATTTATTTCTAGTTTTAAAAActtgt
tatttttcattataAGAATGGAGAAGACAAATGACAGAATTGAATCTTCC
GCTGATTTTCAAGGGGCTTTTCTTGATGCTATCGAGAAACTCGGGGATGC
AGACTGTTCCCAGAAAGATTATGATCATTTTGTTGAGCTATGTAAGAAAA
TGACTGATGCAGATTTCCTGtgcaaaattattgaaaagctCCTGAATTGG
CTACCTGGTAAAAATCGAGAAGTTTGTTTTATTGAAATGCTAACTTCATT
ACTTGAAGCGTTATTTGATTTGTTAAACTCTAAAGCTTATAGTGATGTTT
ATCCAGCAATGCTGGAAAAAGATTCCTTGTACCCTATTGTTCTTATGCTT
TTTGGGACCAAGTGGCTGTTTCGTCCAGAAATCTTGACAAAATTCATATC
CAATCGATTTGTTCAAGAACCTTTGACTGTCGAAATCATTTTATGGGGTT
TACTCAGAAAGGATTGTTTTAGTAAAAAAGAGTTAAAATCTAATGATGAT
TTTTGTACATTGTTACGGCATTTTGGCAAGGTTACTATTGAGAATGACAG
AGCTCAAGTTCATCGTTTTTacaaaacaatgatccaatttttaatcaaga
attaCGATTGGGTATTGGCAAAGGAGCTTGTACCTTTAGTGCTTAATATT
TCAGATCACAATGAAGATTTTGGGTGTTTCTTTGAACTCTTCGAAGGCAT
GGAATCATTGAAATCTGAACAAATCAAAATACTTGTTCAAAGTGGTATTT
CATTTTTCGCAAAGGCTGTTTCTCGTGAAAAATTGTATGGTTTTGGGTCT
ACTGAAGAATCAGAGTACGAAAGTATGTTGAAGtatgtaaaaattatttt
caaggaTGACTTTTATTATGATATAGCAAAACAGCTGATAGCCCTTGACC
AGTTCAAGTCCAAAGATCACGAGAAGATATACAACACAAATAAAAAGAGC
ATTTTGCAAAGACTGATCCATGATTTAAAAAAGGATTTCTATTACAATGA
AATTTACATTGATCTAGTACGTGTTCAGATTGAAAATCTAAAGCCACTAC
AAGACAAAGGGTGTCCGAAATTGTTTTGGGAGCAGCCAGATGCCGTGTTT
GGTTATGACGTAGGTATTGAAGAATTTTTAGAAAGTGATAAAGTGAGGCT
AGTTGTATCTGATGACTTTGAAAACGACTTGGAAATTGCACATGCGTGGA
TCAATGATCACGCTGGACAATATCTTGAAGATGGTTATAGCTTTTCTGCG
GTGGCAAGGCTATCTACGGAAGGCACAGTTGAAGTTATACTGCAAAAAGA
ACgacatatttatGAAAGGAAAAGAGATGGATATTTTAAGCTGATGAATG
AATTGGTAGATTTGGAAACTTTCTTGCAGTCTCAAAATATGATACATACT
GGTACCAAACGAAAGTACAATATCGGAGAGGAAAATAGAAACTGAATATT
CTTACTTGAAAACTCGATTGATCATGGAGACCAAAGCTTTGGCATTCAAT
GGTTCGTTGTGTGTCAATTTTGTGCACTCTT
Run BLAST on NCBI

transcript from alignment at sc0000001:1848213..1852957+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000097 ID=TCONS_00000097|Name=TCONS_00000097|organism=Clytia hemisphaerica|type=transcript|length=4745bp|location=Sequence derived from alignment at sc0000001:1848213..1852957+ (Clytia hemisphaerica)
AGAATATCTATAATCTAAGATTTCATTTATTTCTAGTTTTAAAAActtgt
tatttttcattataAGAATGGAGAAGACAAATGACAGAATTGAATCTTCC
GCTGATTTTCAAGGGGCTTTTCTTGATGCTATCGAGAAACTCGGGGATGC
AGACTGTTCCCAGAAAGATTATGATCATTTTGTTGAGCTATGTAAGAAAA
TGACTGATGCAGATTTCCTGtgcaaaattattgaaaagctCCTGAATTGG
CTACCTGGTAAAAATCGAGAAGTTTGTTTTATTGAAATGCTAACTTCATT
ACTTGAAGCGTTATTTGATTTGTTAAACTCTAAAGCTTATAGTGATGTTT
ATCCAGCAATGCTGGAAAAAGATTCCTTGTACCCTATTGTTCTTATGCTT
TTTGGGACCAAGTGGCTGTTTCGTCCAGAAATCTTGACAAAATTCATATC
CAATCGATTTGTTCAAGAACCTTTGACTGTCGAAATCATTTTATGGGGTT
TACTCAGAAAGGATTGTTTTAGTAAAAAAGAGTTAAAATCTAATGATGAT
TTTTGTACATTGTTACGGCATTTTGGCAAGGTTACTATTGAGAATGACAG
AGCTCAAGTTCATCGTTTTTacaaaacaatgatccaatttttaatcaaga
attaCGATTGGGTATTGGCAAAGGAGCTTGTACCTTTAGTGCTTAATATT
TCAGATCACAATGAAGATTTTGGGTGTTTCTTTGAACTCTTCGAAGGCAT
GGAATCATTGAAATCTGAACAAATCAAAATACTTGTTCAAAGTGGTATTT
CATTTTTCGCAAAGGCTGTTTCTCGTGAAAAATTGTATGGTTTTGGGTCT
ACTGAAGAATCAGAGTACGAAAGTATGTTGAAGtatgtaaaaattatttt
caaggaTGACTTTTATTATGATATAGCAAAACAGCTGATAGCCCTTGACC
AGTTCAAGTCCAAAGATCACGAGAAGATATACAACACAAATAAAAAGAGC
ATTTTGCAAAGACTGATCCATGATTTAAAAAAGGATTTCTATTACAATGA
AATTTACATTGATCTAGTACGTGTTCAGATTGAAAATCTAAAGCCACTAC
AAGACAAAGGGTGTCCGAAATTGTTTTGGGAGCAGCCAGATGCCGTGTTT
GGTTATGACGTAGGTATTGAAGAATTTTTAGAAAGTGATAAAGTGAGGCT
AGTTGTATCTGATGACTTTGAAAACGACTTGGAAATTGCACATGCGTGGA
TCAATGATCACGCTGGACAATATCTTGAAGATGGTTATAGCTTTTCTGCG
GTGGCAAGGCTATCTACGGAAGGCACAGTTGAAGTTATACTGCAAAAAGA
ACATCATATTTGGGAAAGGAAACGAGNGAAGGCACAGTTGAAGTTATACT
GCAAAAAGAACGTCATATTTGGGAAAGGAAACGAGATGGATATTTTAAGC
TGATGAATGAATTGGTAGATTTGGAAACTTTCTTGCAGTGCCCAAAATTA
ATGCGTCTGGGCaccaaaagaaaatataatctCAGACAAAGAGAAAGAAA
TTAGATGGTCTTCAAATTTCACTTTGAATTACCACTTTTGTCAATAGACT
TTAATGTATTACTTTAAATTTGACAGAATTGAATTTTAAGACTCATTTAT
TTGGCTGACGGCTGACAAAAGTACCATGTTTTTATTAGAAAAAGACTTAT
TTCAAGTCCGTAAATAGCAAGAATTTGGAAGATATATATAAAACGAgtta
aatttggctgaaaaaaaaaaatttgcagtgTGTTTTGGGAAAATCTGcca
aatttaccaaattttctttctgccaaattttttttcctattGTGAAGTGT
AgcttattttaaaaaattttctcttcACTTTTCTGCTTGAATGGAGATTT
TCCTAGTGTAACAATTGATATATTCTTGTTTTGAGGGCcttatagggggg
gggggtaccaagATTTGCCAAGAAAATGGGGGATGGAAATGTAGGGGATC
ataagaaaggggggggggttggaatatttttaaaaatttttttttttttt
tcgagggGCAttataggggggggggtaccaagATTTGCCAAGAAAATGGG
GGATGGAAATGTAGGGTGTCataagaaaggggggggggttggaaatgttt
ggtcaattttttattcatatACAAAATGGTCACAATGGGACCATTGTCTC
GTTTTATTGCAAAATTCGAAACATTCTTATATTACCTTATTTCTGTAAAA
TAAGGTAATAAAAGACTTCATTACAGAAAGGGGGATGGGTATAaaggggg
atgaaataaacctagggggtcATACCCCTACTACAAACTTTTGCACTCTT
AGTCTAAATTTGACCTTAAATTGTTCCTATTAAAGCCAGTATATCTATTC
ATGGGTCGGTTTGCTAATTCTGCAAAAACATTCCTTTAGCTTCATTAAAT
AGAATATTGTATTTTAGATATTTTGGAAATGATAAAAATCCAATTATTCG
AACAAAAGTCAACTTTATCTTTCTCGTTAAATCCACGCTCTCTTGCTTTA
CTTACATAGAAATACTAACATtgattatttgtttttatttttcagcaaaa
aataaaaaaaacattgagacaaaaacaaaaaagaaattatcatTGTCATA
GAgggtaaaacttttttttaccaTTCACTAAAATGACAGTTTGTCTACAC
gttttgttttttggacctacctggaggtcctataaattaacctgtgtttg
ttcgtctgttaccaacttttttcTGGATCgaatcataggaattttgcgat
ttttggtatttttaaaggtgcaaaatggtgataaCCAAAAtttgacggag
cccgatttttgaaaaaaaatatttttgttaaaaatctgttctttagtttt
tcctaaatttttgtataaagacATAGAATTACAGTGTGCTGAATatgaaa
aagttcatttttcgaaaaaaaaaatttggcaccaactttcaaaattttaa
attattcagtTTTTGTTTCTACATTGCCTTCATTAAACtgttattattcg
ttttataaacaggtaggtccataaaagtatcacttgttttttttttcata
agaacatctaaaaattttgaaaccttgggacgttcttaactttttgagtt
tttttaagcctaaaaattgttcttcaccattttttgagttatTTCATAAC
AAGAATGGAAAGTCAAACgaaggaaaaaaatcataatgattaTCAAAAAG
ACTTTTGGGATGCTGCCCAACAACTTCATATATCTAACTGCTCCAAGGAA
GATTATGAACGTTTTGTAGACAAATGTAAGACATTGACAGATCCGCAGTT
CTTGTCCGAAATCACCGAATATCTCTTGGGAAGACTTCGATACGTATATG
AGGAAGTTGATTCTACTAAGATGTTAACTTCATTAATGGAAAAGTTGATG
AACTTATTAAACTCCAAATCTTACAGCAAAATTAAACCTGTGAAAGTCGA
TTCTATGTATGCTAGTATTCTATTGCTTTTTGGTGTCGAACACTCAATGT
TCAATTCAAAGATTCTAACCAAATTCATTCTGGCAAGTTTGATGTCAAAA
TCAATATCAGATGGACGCGTTCTTGGAGCAATGACTTTGGAATTCATTCT
ATCAGGGTTTATCAAAAATGCTTGTTTTGATATAGAGGAATGGAAATCTA
ACGATATTTTTTGTACCTTACTGCGCCATTTTGGAAAGgctatttctaaa
aataaccGATCTCAAATACTTCCTTTTTATAGAATAatcattcatttttt
catcaataACCAAGATTGGGTGTTGGTTAAGGACATCTTGCCAACAGTGC
TTGATATCTCAAATCACAAACAAAACTTTAGTGAATATATTGAACTATTT
GAAGGCTTGGACTCAGTTGATGCAGAGCGTCTCAATGTTCTCGTTCAATG
TGGTGTTCCATTTTTTGCGGAGGTTCTGCATCGTGAGTCCTTGAGCGTTA
TTGGATCTACCAGAGATGCAGAATATGAAAGCATGCTGAAATAtgtaaaa
atgattttcaaagaTGATTTTTATTCAGATACAGCTAAAAAACTGATAGA
ACTCGATGAAATGAAGACCAAAGATGATAACAAAATGTGCAACGCTGATG
GGAAAAGTATTTTGCAAAGACTGATCATTGATTTAAAAACAGAATTTTAT
CATCATGATTTTTATATTGATCTAGTTCGTGTTCAAATACAAAACCTAAA
GCATCTACAAGTTAAAGGATGTCCAAAATTTTCATGGGAACAACCGGATG
CTAGATTCAATCGAAACACAAACATTCAAGATTTTCTGCACAGTAACAAA
GTAACGTTGAAATTAATTGGTAGAAATATCTTTGTTAACAATCTTGAAAT
CGCACACTTTTGGATTAATGATTGGGCGCAACCACATATTGGACTTGGTT
TTAGTTTTACTGCGGTCGCAAGGTTATCAACGGAAGGCACAGTTGAAATT
ATACTgcaaaaagaacgacatatttatGAAAGGAAAAGAGATGGATATTT
TAAGCTGATGAATGAATTGGTAGATTTGGAAACTTTCTTGCAGTCTCAAA
ATATGATACATACTGGTACCAAACGAAAGTACAATATCGGAGAGGAAAAT
AGAAACTGAATATTCTTACTTGAAAACTCGATTGATCATGGAGACCAAAG
CTTTGGCATTCAATGGTTCGTTGTGTGTCAATTTTGTGCACTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000048XLOC_000048Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000097-exon-sc0000001-1491911889:1848213..1849564TCONS_00000097-exon-sc0000001-1491911889:1848213..1849564Clytia hemisphaericaexon
TCONS_00000097-exon-sc0000001-1510915933:1848213..1849564TCONS_00000097-exon-sc0000001-1510915933:1848213..1849564Clytia hemisphaericaexon
TCONS_00000097-exon-sc0000001-1575043694:1848213..1849564TCONS_00000097-exon-sc0000001-1575043694:1848213..1849564Clytia hemisphaericaexon
TCONS_00000097-exon-sc0000001-1491911889:1852729..1852957TCONS_00000097-exon-sc0000001-1491911889:1852729..1852957Clytia hemisphaericaexon
TCONS_00000097-exon-sc0000001-1510915933:1852729..1852957TCONS_00000097-exon-sc0000001-1510915933:1852729..1852957Clytia hemisphaericaexon
TCONS_00000097-exon-sc0000001-1575043694:1852729..1852957TCONS_00000097-exon-sc0000001-1575043694:1852729..1852957Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1848213..1852957 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.78784	6.12717	3.3172	2.5879	5.80144	4.23874	3.69441	4.1542	1.44273	1.40271	1.79132	1.28037	1.33537	1.6388	1.54196	1.89703	1.55087	1.92845	1.49657	1.0749	1.82911	1.88146	5.18994	5.81995	1.05012	1.04763	2.2759	0.864899	2.47826	2.64536
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000097 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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