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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000097 ID=TCONS_00000097|Name=TCONS_00000097|organism=Clytia hemisphaerica|type=transcript|length=1581bp
AGAATATCTATAATCTAAGATTTCATTTATTTCTAGTTTTAAAAActtgt
tatttttcattataAGAATGGAGAAGACAAATGACAGAATTGAATCTTCC
GCTGATTTTCAAGGGGCTTTTCTTGATGCTATCGAGAAACTCGGGGATGC
AGACTGTTCCCAGAAAGATTATGATCATTTTGTTGAGCTATGTAAGAAAA
TGACTGATGCAGATTTCCTGtgcaaaattattgaaaagctCCTGAATTGG
CTACCTGGTAAAAATCGAGAAGTTTGTTTTATTGAAATGCTAACTTCATT
ACTTGAAGCGTTATTTGATTTGTTAAACTCTAAAGCTTATAGTGATGTTT
ATCCAGCAATGCTGGAAAAAGATTCCTTGTACCCTATTGTTCTTATGCTT
TTTGGGACCAAGTGGCTGTTTCGTCCAGAAATCTTGACAAAATTCATATC
CAATCGATTTGTTCAAGAACCTTTGACTGTCGAAATCATTTTATGGGGTT
TACTCAGAAAGGATTGTTTTAGTAAAAAAGAGTTAAAATCTAATGATGAT
TTTTGTACATTGTTACGGCATTTTGGCAAGGTTACTATTGAGAATGACAG
AGCTCAAGTTCATCGTTTTTacaaaacaatgatccaatttttaatcaaga
attaCGATTGGGTATTGGCAAAGGAGCTTGTACCTTTAGTGCTTAATATT
TCAGATCACAATGAAGATTTTGGGTGTTTCTTTGAACTCTTCGAAGGCAT
GGAATCATTGAAATCTGAACAAATCAAAATACTTGTTCAAAGTGGTATTT
CATTTTTCGCAAAGGCTGTTTCTCGTGAAAAATTGTATGGTTTTGGGTCT
ACTGAAGAATCAGAGTACGAAAGTATGTTGAAGtatgtaaaaattatttt
caaggaTGACTTTTATTATGATATAGCAAAACAGCTGATAGCCCTTGACC
AGTTCAAGTCCAAAGATCACGAGAAGATATACAACACAAATAAAAAGAGC
ATTTTGCAAAGACTGATCCATGATTTAAAAAAGGATTTCTATTACAATGA
AATTTACATTGATCTAGTACGTGTTCAGATTGAAAATCTAAAGCCACTAC
AAGACAAAGGGTGTCCGAAATTGTTTTGGGAGCAGCCAGATGCCGTGTTT
GGTTATGACGTAGGTATTGAAGAATTTTTAGAAAGTGATAAAGTGAGGCT
AGTTGTATCTGATGACTTTGAAAACGACTTGGAAATTGCACATGCGTGGA
TCAATGATCACGCTGGACAATATCTTGAAGATGGTTATAGCTTTTCTGCG
GTGGCAAGGCTATCTACGGAAGGCACAGTTGAAGTTATACTGCAAAAAGA
ACgacatatttatGAAAGGAAAAGAGATGGATATTTTAAGCTGATGAATG
AATTGGTAGATTTGGAAACTTTCTTGCAGTCTCAAAATATGATACATACT
GGTACCAAACGAAAGTACAATATCGGAGAGGAAAATAGAAACTGAATATT
CTTACTTGAAAACTCGATTGATCATGGAGACCAAAGCTTTGGCATTCAAT
GGTTCGTTGTGTGTCAATTTTGTGCACTCTT Run BLAST on NCBI transcript from alignment at sc0000001:1848213..1852957+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000097 ID=TCONS_00000097|Name=TCONS_00000097|organism=Clytia hemisphaerica|type=transcript|length=4745bp|location=Sequence derived from alignment at sc0000001:1848213..1852957+ (Clytia hemisphaerica)
AGAATATCTATAATCTAAGATTTCATTTATTTCTAGTTTTAAAAActtgt
tatttttcattataAGAATGGAGAAGACAAATGACAGAATTGAATCTTCC
GCTGATTTTCAAGGGGCTTTTCTTGATGCTATCGAGAAACTCGGGGATGC
AGACTGTTCCCAGAAAGATTATGATCATTTTGTTGAGCTATGTAAGAAAA
TGACTGATGCAGATTTCCTGtgcaaaattattgaaaagctCCTGAATTGG
CTACCTGGTAAAAATCGAGAAGTTTGTTTTATTGAAATGCTAACTTCATT
ACTTGAAGCGTTATTTGATTTGTTAAACTCTAAAGCTTATAGTGATGTTT
ATCCAGCAATGCTGGAAAAAGATTCCTTGTACCCTATTGTTCTTATGCTT
TTTGGGACCAAGTGGCTGTTTCGTCCAGAAATCTTGACAAAATTCATATC
CAATCGATTTGTTCAAGAACCTTTGACTGTCGAAATCATTTTATGGGGTT
TACTCAGAAAGGATTGTTTTAGTAAAAAAGAGTTAAAATCTAATGATGAT
TTTTGTACATTGTTACGGCATTTTGGCAAGGTTACTATTGAGAATGACAG
AGCTCAAGTTCATCGTTTTTacaaaacaatgatccaatttttaatcaaga
attaCGATTGGGTATTGGCAAAGGAGCTTGTACCTTTAGTGCTTAATATT
TCAGATCACAATGAAGATTTTGGGTGTTTCTTTGAACTCTTCGAAGGCAT
GGAATCATTGAAATCTGAACAAATCAAAATACTTGTTCAAAGTGGTATTT
CATTTTTCGCAAAGGCTGTTTCTCGTGAAAAATTGTATGGTTTTGGGTCT
ACTGAAGAATCAGAGTACGAAAGTATGTTGAAGtatgtaaaaattatttt
caaggaTGACTTTTATTATGATATAGCAAAACAGCTGATAGCCCTTGACC
AGTTCAAGTCCAAAGATCACGAGAAGATATACAACACAAATAAAAAGAGC
ATTTTGCAAAGACTGATCCATGATTTAAAAAAGGATTTCTATTACAATGA
AATTTACATTGATCTAGTACGTGTTCAGATTGAAAATCTAAAGCCACTAC
AAGACAAAGGGTGTCCGAAATTGTTTTGGGAGCAGCCAGATGCCGTGTTT
GGTTATGACGTAGGTATTGAAGAATTTTTAGAAAGTGATAAAGTGAGGCT
AGTTGTATCTGATGACTTTGAAAACGACTTGGAAATTGCACATGCGTGGA
TCAATGATCACGCTGGACAATATCTTGAAGATGGTTATAGCTTTTCTGCG
GTGGCAAGGCTATCTACGGAAGGCACAGTTGAAGTTATACTGCAAAAAGA
ACATCATATTTGGGAAAGGAAACGAGNGAAGGCACAGTTGAAGTTATACT
GCAAAAAGAACGTCATATTTGGGAAAGGAAACGAGATGGATATTTTAAGC
TGATGAATGAATTGGTAGATTTGGAAACTTTCTTGCAGTGCCCAAAATTA
ATGCGTCTGGGCaccaaaagaaaatataatctCAGACAAAGAGAAAGAAA
TTAGATGGTCTTCAAATTTCACTTTGAATTACCACTTTTGTCAATAGACT
TTAATGTATTACTTTAAATTTGACAGAATTGAATTTTAAGACTCATTTAT
TTGGCTGACGGCTGACAAAAGTACCATGTTTTTATTAGAAAAAGACTTAT
TTCAAGTCCGTAAATAGCAAGAATTTGGAAGATATATATAAAACGAgtta
aatttggctgaaaaaaaaaaatttgcagtgTGTTTTGGGAAAATCTGcca
aatttaccaaattttctttctgccaaattttttttcctattGTGAAGTGT
AgcttattttaaaaaattttctcttcACTTTTCTGCTTGAATGGAGATTT
TCCTAGTGTAACAATTGATATATTCTTGTTTTGAGGGCcttatagggggg
gggggtaccaagATTTGCCAAGAAAATGGGGGATGGAAATGTAGGGGATC
ataagaaaggggggggggttggaatatttttaaaaatttttttttttttt
tcgagggGCAttataggggggggggtaccaagATTTGCCAAGAAAATGGG
GGATGGAAATGTAGGGTGTCataagaaaggggggggggttggaaatgttt
ggtcaattttttattcatatACAAAATGGTCACAATGGGACCATTGTCTC
GTTTTATTGCAAAATTCGAAACATTCTTATATTACCTTATTTCTGTAAAA
TAAGGTAATAAAAGACTTCATTACAGAAAGGGGGATGGGTATAaaggggg
atgaaataaacctagggggtcATACCCCTACTACAAACTTTTGCACTCTT
AGTCTAAATTTGACCTTAAATTGTTCCTATTAAAGCCAGTATATCTATTC
ATGGGTCGGTTTGCTAATTCTGCAAAAACATTCCTTTAGCTTCATTAAAT
AGAATATTGTATTTTAGATATTTTGGAAATGATAAAAATCCAATTATTCG
AACAAAAGTCAACTTTATCTTTCTCGTTAAATCCACGCTCTCTTGCTTTA
CTTACATAGAAATACTAACATtgattatttgtttttatttttcagcaaaa
aataaaaaaaacattgagacaaaaacaaaaaagaaattatcatTGTCATA
GAgggtaaaacttttttttaccaTTCACTAAAATGACAGTTTGTCTACAC
gttttgttttttggacctacctggaggtcctataaattaacctgtgtttg
ttcgtctgttaccaacttttttcTGGATCgaatcataggaattttgcgat
ttttggtatttttaaaggtgcaaaatggtgataaCCAAAAtttgacggag
cccgatttttgaaaaaaaatatttttgttaaaaatctgttctttagtttt
tcctaaatttttgtataaagacATAGAATTACAGTGTGCTGAATatgaaa
aagttcatttttcgaaaaaaaaaatttggcaccaactttcaaaattttaa
attattcagtTTTTGTTTCTACATTGCCTTCATTAAACtgttattattcg
ttttataaacaggtaggtccataaaagtatcacttgttttttttttcata
agaacatctaaaaattttgaaaccttgggacgttcttaactttttgagtt
tttttaagcctaaaaattgttcttcaccattttttgagttatTTCATAAC
AAGAATGGAAAGTCAAACgaaggaaaaaaatcataatgattaTCAAAAAG
ACTTTTGGGATGCTGCCCAACAACTTCATATATCTAACTGCTCCAAGGAA
GATTATGAACGTTTTGTAGACAAATGTAAGACATTGACAGATCCGCAGTT
CTTGTCCGAAATCACCGAATATCTCTTGGGAAGACTTCGATACGTATATG
AGGAAGTTGATTCTACTAAGATGTTAACTTCATTAATGGAAAAGTTGATG
AACTTATTAAACTCCAAATCTTACAGCAAAATTAAACCTGTGAAAGTCGA
TTCTATGTATGCTAGTATTCTATTGCTTTTTGGTGTCGAACACTCAATGT
TCAATTCAAAGATTCTAACCAAATTCATTCTGGCAAGTTTGATGTCAAAA
TCAATATCAGATGGACGCGTTCTTGGAGCAATGACTTTGGAATTCATTCT
ATCAGGGTTTATCAAAAATGCTTGTTTTGATATAGAGGAATGGAAATCTA
ACGATATTTTTTGTACCTTACTGCGCCATTTTGGAAAGgctatttctaaa
aataaccGATCTCAAATACTTCCTTTTTATAGAATAatcattcatttttt
catcaataACCAAGATTGGGTGTTGGTTAAGGACATCTTGCCAACAGTGC
TTGATATCTCAAATCACAAACAAAACTTTAGTGAATATATTGAACTATTT
GAAGGCTTGGACTCAGTTGATGCAGAGCGTCTCAATGTTCTCGTTCAATG
TGGTGTTCCATTTTTTGCGGAGGTTCTGCATCGTGAGTCCTTGAGCGTTA
TTGGATCTACCAGAGATGCAGAATATGAAAGCATGCTGAAATAtgtaaaa
atgattttcaaagaTGATTTTTATTCAGATACAGCTAAAAAACTGATAGA
ACTCGATGAAATGAAGACCAAAGATGATAACAAAATGTGCAACGCTGATG
GGAAAAGTATTTTGCAAAGACTGATCATTGATTTAAAAACAGAATTTTAT
CATCATGATTTTTATATTGATCTAGTTCGTGTTCAAATACAAAACCTAAA
GCATCTACAAGTTAAAGGATGTCCAAAATTTTCATGGGAACAACCGGATG
CTAGATTCAATCGAAACACAAACATTCAAGATTTTCTGCACAGTAACAAA
GTAACGTTGAAATTAATTGGTAGAAATATCTTTGTTAACAATCTTGAAAT
CGCACACTTTTGGATTAATGATTGGGCGCAACCACATATTGGACTTGGTT
TTAGTTTTACTGCGGTCGCAAGGTTATCAACGGAAGGCACAGTTGAAATT
ATACTgcaaaaagaacgacatatttatGAAAGGAAAAGAGATGGATATTT
TAAGCTGATGAATGAATTGGTAGATTTGGAAACTTTCTTGCAGTCTCAAA
ATATGATACATACTGGTACCAAACGAAAGTACAATATCGGAGAGGAAAAT
AGAAACTGAATATTCTTACTTGAAAACTCGATTGATCATGGAGACCAAAG
CTTTGGCATTCAATGGTTCGTTGTGTGTCAATTTTGTGCACTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000097-exon-sc0000001-1491911889:1848213..1849564 | TCONS_00000097-exon-sc0000001-1491911889:1848213..1849564 | Clytia hemisphaerica | exon |
| TCONS_00000097-exon-sc0000001-1510915933:1848213..1849564 | TCONS_00000097-exon-sc0000001-1510915933:1848213..1849564 | Clytia hemisphaerica | exon |
| TCONS_00000097-exon-sc0000001-1575043694:1848213..1849564 | TCONS_00000097-exon-sc0000001-1575043694:1848213..1849564 | Clytia hemisphaerica | exon |
| TCONS_00000097-exon-sc0000001-1491911889:1852729..1852957 | TCONS_00000097-exon-sc0000001-1491911889:1852729..1852957 | Clytia hemisphaerica | exon |
| TCONS_00000097-exon-sc0000001-1510915933:1852729..1852957 | TCONS_00000097-exon-sc0000001-1510915933:1852729..1852957 | Clytia hemisphaerica | exon |
| TCONS_00000097-exon-sc0000001-1575043694:1852729..1852957 | TCONS_00000097-exon-sc0000001-1575043694:1852729..1852957 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:1848213..1852957 + |
Blast
The following BLAST results are available for this feature:
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