TCONS_00000095 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000095
Unique NameTCONS_00000095
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1809

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000095 ID=TCONS_00000095|Name=TCONS_00000095|organism=Clytia hemisphaerica|type=transcript|length=1809bp
ctttcagtcgaaaagtaaaagaaacaaacaaaaaagaaaacacaatgAAG
GACATAACATACCATCAATTTAAAGACAAAGAATTATTTTGATATTCTAC
AGAATGGAGAAGACAAATGACAGAATTGAATCTTCCGCTGATTTTCAAGG
GGCTTTTCTTGATGCTATCGAGAAACTCGGGGATGCAGACTGTTCCCAGA
AAGATTATGATCATTTTGTTGAGCTATGTAAGAAAATGACTGATGCAGAT
TTCCTGtgcaaaattattgaaaagctCCTGAATTGGCTACCTGGTAAAAA
TCGAGAAGTTTGTTTTATTGAAATGCTAACTTCATTACTTGAAGCGTTAT
TTGATTTGTTAAACTCTAAAGCTTATAGTGATGTTTATCCAGCAATGCTG
GAAAAAGATTCCTTGTACCCTATTGTTCTTATGCTTTTTGGGACCAAGTG
GCTGTTTCGTCCAGAAATCTTGACAAAATTCATATCCAATCGATTTGTTC
AAGAACCTTTGACTGTCGAAATCATTTTATGGGGTTTACTCAGAAAGGAT
TGTTTTAGTAAAAAAGAGTTAAAATCTAATGATGATTTTTGTACATTGTT
ACGGCATTTTGGCAAGGTTACTATTGAGAATGACAGAGCTCAAGTTCATC
GTTTTTacaaaacaatgatccaatttttaatcaagaattaCGATTGGGTA
TTGGCAAAGGAGCTTGTACCTTTAGTGCTTAATATTTCAGATCACAATGA
AGATTTTGGGTGTTTCTTTGAACTCTTCGAAGGCATGGAATCATTGAAAT
CTGAACAAATCAAAATACTTGTTCAAAGTGGTATTTCATTTTTCGCAAAG
GCTGTTTCTCGTGAAAAATTGTATGGTTTTGGGTCTACTGAAGAATCAGA
GTACGAAAGTATGTTGAAGtatgtaaaaattattttcaaggaTGACTTTT
ATTATGATATAGCAAAACAGCTGATAGCCCTTGACCAGTTCAAGTCCAAA
GATCACGAGAAGATATACAACACAAATAAAAAGAGCATTTTGCAAAGACT
GATCCATGATTTAAAAAAGGATTTCTATTACAATGAAATTTACATTGATC
TAGTACGTGTTCAGATTGAAAATCTAAAGCCACTACAAGACAAAGGGTGT
CCGAAATTGTTTTGGGAGCAGCCAGATGCCGTGTTTGGTTATGACGTAGG
TATTGAAGAATTTTTAGAAAGTGATAAAGTGAGGCTAGTTGTATCTGATG
ACTTTGAAAACGACTTGGAAATTGCACATGCGTGGATCAATGATCACGCT
GGACAATATCTTGAAGATGGTTATAGCTTTTCTGCGGTGGCAAGGCTATC
TACGGAAGGTCATATTTGGGAAAGGAAACGAGATGGATATTTTAAGCTGA
TGAATGAATTGGTAGATTTGGAAACTTTCTTGCAGTGCCCAAAATTAATG
CGTCTGGGCaccaaaagaaaatataatctCAGACAAAGAGAAAGAAATTA
GATGGTCTTCAAATTTCACTTTGAATTACCACTTTTGTCAATAGACTTTA
ATGTATTACTTTAAATTTGACAGAATTGAATTTTAAGACTCATTTATTTG
GCTGACGGCTGACAAAAGTACCATGTTTTTATTAGAAAAAGACTTATTTC
AAGTCCGTAAATAGCAAGAATTTGGAAGATATATATAAAACGAgttaaat
ttggctgaaaaaaaaaaatttgcagtgTGTTTTGGGAAAATCTGccaaat
ttaccaaattttctttctgccaaattttttttcctattGTGAAGTGTAgc
ttattttaa
Run BLAST on NCBI

protein sequence of TCONS_00000095-protein

>TCONS_00000095-protein ID=TCONS_00000095-protein|Name=TCONS_00000095-protein|organism=Clytia hemisphaerica|type=polypeptide|length=465bp
MEKTNDRIESSADFQGAFLDAIEKLGDADCSQKDYDHFVELCKKMTDADF
LCKIIEKLLNWLPGKNREVCFIEMLTSLLEALFDLLNSKAYSDVYPAMLE
KDSLYPIVLMLFGTKWLFRPEILTKFISNRFVQEPLTVEIILWGLLRKDC
FSKKELKSNDDFCTLLRHFGKVTIENDRAQVHRFYKTMIQFLIKNYDWVL
AKELVPLVLNISDHNEDFGCFFELFEGMESLKSEQIKILVQSGISFFAKA
VSREKLYGFGSTEESEYESMLKYVKIIFKDDFYYDIAKQLIALDQFKSKD
HEKIYNTNKKSILQRLIHDLKKDFYYNEIYIDLVRVQIENLKPLQDKGCP
KLFWEQPDAVFGYDVGIEEFLESDKVRLVVSDDFENDLEIAHAWINDHAG
QYLEDGYSFSAVARLSTEGHIWERKRDGYFKLMNELVDLETFLQCPKLMR
LGTKRKYNLRQRERN
Run BLAST on NCBI

transcript from alignment at sc0000001:1846916..1850074+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000095 ID=TCONS_00000095|Name=TCONS_00000095|organism=Clytia hemisphaerica|type=transcript|length=3159bp|location=Sequence derived from alignment at sc0000001:1846916..1850074+ (Clytia hemisphaerica)
ctttcagtcgaaaagtaaaagaaacaaacaaaaaagaaaacacaatgAAG GACATAACATACCATCAATTTAAAGACAAAGAATTATTTTGATATTCTAC AGGTTTTTTATGTTTGACCctattttataatttattcTTCATACAATTTT GCCCTTGATGCTTTCTAGGCTCCACTCTTTCCAATTCTAGGGAAATTTTT GCTATAATATTTGTACATTTCACAAATTTATGCCTCTGAAAGCAGCCAGT TTGAAAcgcaggtcaacaggtcacaggtcaacagggcACAGGACATAGAC ACAGGTCATACacacaggtcatacaaactacagaACAGAAAAGTATAACT TACTTCTAGCATAATTTATAAcatgtttcttaaaatattATATGCAATGT TGTAAGCTATTTAGAACATTCAAGGACAAATCACTAACCCCAAGTATGTT TTAGGATCCTTAGTAGGATCCTGGCTGTGTGAGTGGATATAGTTTGGGCt tcttcagaaaaaaattgaatatgaggGGGTGTggggaggatataacattt tttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNccccccccccccccaaacattgaattttG TCTGAAAACACcttgcacctgaaaacctcaaattttgcacctgcACTTGA CTTTTTCCGATTTGTGCACTCAAGATCTCAAGCAAACGTGCCACATTCTG CAAACTGGGTTTGCCtctaaaacaaggcaaattttgcagacTTTTCAGTA CCCCCTTAAAAATGTTCTAGATCAATATACCTCCAGTATGATATTTTTGA CAATAAgtgttttcaaacattttctttttgctttttttaataattaaagc tgacctgtgtcaataacctgtgacctgttgacctctTAAAGTTGATTTTC ACATTCAGAatttcacttcattttattcacacaattttgttttgattttc atgcATTCACCAAATGATACAAGCTTGTGTGTGTTTTCATGCAAGCTGCT TTAGGGCCTGAAATAGATTTCAACTATCATATCTCCTAACCAATCCTAAC ATTATACCTGACATTTGCTTActatttttaaacaaacaaagaaaatttgt ttcTCTATTCCTGCCACTCAAGCACAAAATGTTTAGAATATCTCTTTTAT TCTGCTTTTTCAGCATAGAGGTGTGCCTCCTTTGTATATCATATGAAAGA ATATCTATAATCTAAGATTTCATTTATTTCTAGTTTTAAAAActtgttat ttttcattataAGAATGGAGAAGACAAATGACAGAATTGAATCTTCCGCT GATTTTCAAGGGGCTTTTCTTGATGCTATCGAGAAACTCGGGGATGCAGA CTGTTCCCAGAAAGATTATGATCATTTTGTTGAGCTATGTAAGAAAATGA CTGATGCAGATTTCCTGtgcaaaattattgaaaagctCCTGAATTGGCTA CCTGGTAAAAATCGAGAAGTTTGTTTTATTGAAATGCTAACTTCATTACT TGAAGCGTTATTTGATTTGTTAAACTCTAAAGCTTATAGTGATGTTTATC CAGCAATGCTGGAAAAAGATTCCTTGTACCCTATTGTTCTTATGCTTTTT GGGACCAAGTGGCTGTTTCGTCCAGAAATCTTGACAAAATTCATATCCAA TCGATTTGTTCAAGAACCTTTGACTGTCGAAATCATTTTATGGGGTTTAC TCAGAAAGGATTGTTTTAGTAAAAAAGAGTTAAAATCTAATGATGATTTT TGTACATTGTTACGGCATTTTGGCAAGGTTACTATTGAGAATGACAGAGC TCAAGTTCATCGTTTTTacaaaacaatgatccaatttttaatcaagaatt aCGATTGGGTATTGGCAAAGGAGCTTGTACCTTTAGTGCTTAATATTTCA GATCACAATGAAGATTTTGGGTGTTTCTTTGAACTCTTCGAAGGCATGGA ATCATTGAAATCTGAACAAATCAAAATACTTGTTCAAAGTGGTATTTCAT TTTTCGCAAAGGCTGTTTCTCGTGAAAAATTGTATGGTTTTGGGTCTACT GAAGAATCAGAGTACGAAAGTATGTTGAAGtatgtaaaaattattttcaa ggaTGACTTTTATTATGATATAGCAAAACAGCTGATAGCCCTTGACCAGT TCAAGTCCAAAGATCACGAGAAGATATACAACACAAATAAAAAGAGCATT TTGCAAAGACTGATCCATGATTTAAAAAAGGATTTCTATTACAATGAAAT TTACATTGATCTAGTACGTGTTCAGATTGAAAATCTAAAGCCACTACAAG ACAAAGGGTGTCCGAAATTGTTTTGGGAGCAGCCAGATGCCGTGTTTGGT TATGACGTAGGTATTGAAGAATTTTTAGAAAGTGATAAAGTGAGGCTAGT TGTATCTGATGACTTTGAAAACGACTTGGAAATTGCACATGCGTGGATCA ATGATCACGCTGGACAATATCTTGAAGATGGTTATAGCTTTTCTGCGGTG GCAAGGCTATCTACGGAAGGCACAGTTGAAGTTATACTGCAAAAAGAACA TCATATTTGGGAAAGGAAACGAGNGAAGGCACAGTTGAAGTTATACTGCA AAAAGAACGTCATATTTGGGAAAGGAAACGAGATGGATATTTTAAGCTGA TGAATGAATTGGTAGATTTGGAAACTTTCTTGCAGTGCCCAAAATTAATG CGTCTGGGCaccaaaagaaaatataatctCAGACAAAGAGAAAGAAATTA GATGGTCTTCAAATTTCACTTTGAATTACCACTTTTGTCAATAGACTTTA ATGTATTACTTTAAATTTGACAGAATTGAATTTTAAGACTCATTTATTTG GCTGACGGCTGACAAAAGTACCATGTTTTTATTAGAAAAAGACTTATTTC AAGTCCGTAAATAGCAAGAATTTGGAAGATATATATAAAACGAgttaaat ttggctgaaaaaaaaaaatttgcagtgTGTTTTGGGAAAATCTGccaaat ttaccaaattttctttctgccaaattttttttcctattGTGAAGTGTAgc ttattttaa

Coding sequence (CDS) from alignment at sc0000001:1846916..1850074+

>TCONS_00000095 ID=TCONS_00000095|Name=TCONS_00000095|organism=Clytia hemisphaerica|type=CDS|length=2796bp|location=Sequence derived from alignment at sc0000001:1846916..1850074+ (Clytia hemisphaerica)
ATGGAGAAGACAAATGACAGAATTGAATCTTCCGCTGATTTTCAAGGGGC
TTTTCTTGATGCTATCGAGAAACTCGGGGATGCAGACTGTTCCCAGAAAG
ATTATGATCATTTTGTTGAGCTATGTAAGAAAATGACTGATGCAGATTTC
CTGtgcaaaattattgaaaagctCCTGAATTGGCTACCTGGTAAAAATCG
AGAAGTTTGTTTTATTGAAATGCTAACTTCATTACTTGAAGCGTTATTTG
ATTTGTTAAACTCTAAAGCTTATAGTGATGTTTATCCAGCAATGCTGGAA
AAAGATTCCTTGTACCCTATTGTTCTTATGCTTTTTGGGACCAAGTGGCT
GTTTCGTCCAGAAATCTTGACAAAATTCATATCCAATCGATTTGTTCAAG
AACCTTTGACTGTCGAAATCATTTTATGGGGTTTACTCAGAAAGGATTGT
TTTAGTAAAAAAGAGTTAAAATCTAATGATGATTTTTGTACATTGTTACG
GCATTTTGGCAAGGTTACTATTGAGAATGACAGAGCTCAAGTTCATCGTT
TTTacaaaacaatgatccaatttttaatcaagaattaCGATTGGGTATTG
GCAAAGGAGCTTGTACCTTTAGTGCTTAATATTTCAGATCACAATGAAGA
TTTTGGGTGTTTCTTTGAACTCTTCGAAGGCATGGAATCATTGAAATCTG
AACAAATCAAAATACTTGTTCAAAGTGGTATTTCATTTTTCGCAAAGGCT
GTTTCTCGTGAAAAATTGTATGGTTTTGGGTCTACTGAAGAATCAGAGTA
CGAAAGTATGTTGAAGtatgtaaaaattattttcaaggaTGACTTTTATT
ATGATATAGCAAAACAGCTGATAGCCCTTGACCAGTTCAAGTCCAAAGAT
CACGAGAAGATATACAACACAAATAAAAAGAGCATTTTGCAAAGACTGAT
CCATGATTTAAAAAAGGATTTCTATTACAATGAAATTTACATTGATCTAG
TACGTGTTCAGATTGAAAATCTAAAGCCACTACAAGACAAAGGGTGTCCG
AAATTGTTTTGGGAGCAGCCAGATGCCGTGTTTGGTTATGACGTAGGTAT
TGAAGAATTTTTAGAAAGTGATAAAGTGAGGCTAGTTGTATCTGATGACT
TTGAAAACGACTTGGAAATTGCACATGCGTGGATCAATGATCACGCTGGA
CAATATCTTGAAGATGGTTATAGCTTTTCTGCGGTGGCAAGGCTATCTAC
GGAAGGTCATATTTGGGAAAGGAAACGAGATGGATATTTTAAGCTGATGA
ATGAATTGGTAGATTTGGAAACTTTCTTGCAGTGCCCAAAATTAATGCGT
CTGGGCaccaaaagaaaatataatctCAGACAAAGAGAAAGAAATTAGAT
GGAGAAGACAAATGACAGAATTGAATCTTCCGCTGATTTTCAAGGGGCTT
TTCTTGATGCTATCGAGAAACTCGGGGATGCAGACTGTTCCCAGAAAGAT
TATGATCATTTTGTTGAGCTATGTAAGAAAATGACTGATGCAGATTTCCT
GtgcaaaattattgaaaagctCCTGAATTGGCTACCTGGTAAAAATCGAG
AAGTTTGTTTTATTGAAATGCTAACTTCATTACTTGAAGCGTTATTTGAT
TTGTTAAACTCTAAAGCTTATAGTGATGTTTATCCAGCAATGCTGGAAAA
AGATTCCTTGTACCCTATTGTTCTTATGCTTTTTGGGACCAAGTGGCTGT
TTCGTCCAGAAATCTTGACAAAATTCATATCCAATCGATTTGTTCAAGAA
CCTTTGACTGTCGAAATCATTTTATGGGGTTTACTCAGAAAGGATTGTTT
TAGTAAAAAAGAGTTAAAATCTAATGATGATTTTTGTACATTGTTACGGC
ATTTTGGCAAGGTTACTATTGAGAATGACAGAGCTCAAGTTCATCGTTTT
TacaaaacaatgatccaatttttaatcaagaattaCGATTGGGTATTGGC
AAAGGAGCTTGTACCTTTAGTGCTTAATATTTCAGATCACAATGAAGATT
TTGGGTGTTTCTTTGAACTCTTCGAAGGCATGGAATCATTGAAATCTGAA
CAAATCAAAATACTTGTTCAAAGTGGTATTTCATTTTTCGCAAAGGCTGT
TTCTCGTGAAAAATTGTATGGTTTTGGGTCTACTGAAGAATCAGAGTACG
AAAGTATGTTGAAGtatgtaaaaattattttcaaggaTGACTTTTATTAT
GATATAGCAAAACAGCTGATAGCCCTTGACCAGTTCAAGTCCAAAGATCA
CGAGAAGATATACAACACAAATAAAAAGAGCATTTTGCAAAGACTGATCC
ATGATTTAAAAAAGGATTTCTATTACAATGAAATTTACATTGATCTAGTA
CGTGTTCAGATTGAAAATCTAAAGCCACTACAAGACAAAGGGTGTCCGAA
ATTGTTTTGGGAGCAGCCAGATGCCGTGTTTGGTTATGACGTAGGTATTG
AAGAATTTTTAGAAAGTGATAAAGTGAGGCTAGTTGTATCTGATGACTTT
GAAAACGACTTGGAAATTGCACATGCGTGGATCAATGATCACGCTGGACA
ATATCTTGAAGATGGTTATAGCTTTTCTGCGGTGGCAAGGCTATCTACGG
AAGGTCATATTTGGGAAAGGAAACGAGATGGATATTTTAAGCTGATGAAT
GAATTGGTAGATTTGGAAACTTTCTTGCAGTGCCCAAAATTAATGCGTCT
GGGCaccaaaagaaaatataatctCAGACAAAGAGAAAGAAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000048XLOC_000048Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000095-proteinTCONS_00000095-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000095-exon-sc0000001-1491911889:1846916..1847017TCONS_00000095-exon-sc0000001-1491911889:1846916..1847017Clytia hemisphaericaexon
TCONS_00000095-exon-sc0000001-1510915933:1846916..1847017TCONS_00000095-exon-sc0000001-1510915933:1846916..1847017Clytia hemisphaericaexon
TCONS_00000095-exon-sc0000001-1575043694:1846916..1847017TCONS_00000095-exon-sc0000001-1575043694:1846916..1847017Clytia hemisphaericaexon
TCONS_00000095-exon-sc0000001-1491911889:1848279..1849534TCONS_00000095-exon-sc0000001-1491911889:1848279..1849534Clytia hemisphaericaexon
TCONS_00000095-exon-sc0000001-1510915933:1848279..1849534TCONS_00000095-exon-sc0000001-1510915933:1848279..1849534Clytia hemisphaericaexon
TCONS_00000095-exon-sc0000001-1575043694:1848279..1849534TCONS_00000095-exon-sc0000001-1575043694:1848279..1849534Clytia hemisphaericaexon
TCONS_00000095-exon-sc0000001-1491911889:1849624..1850074TCONS_00000095-exon-sc0000001-1491911889:1849624..1850074Clytia hemisphaericaexon
TCONS_00000095-exon-sc0000001-1510915933:1849624..1850074TCONS_00000095-exon-sc0000001-1510915933:1849624..1850074Clytia hemisphaericaexon
TCONS_00000095-exon-sc0000001-1575043694:1849624..1850074TCONS_00000095-exon-sc0000001-1575043694:1849624..1850074Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1846916..1850074 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.44422 3.78526 2.38255 1.65816 1.79749 0.00183769 0.196468 0.536279 1.20727 1.24694 0 0.0457026 0.514473 0.188042 1.05337 0.656002 0.383151 0.980334 0 0 0.579702 1.06954 4.17154 4.16486 0 1.07018 0.394719 0 1.56109 1.35889
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000095 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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