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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000095 ID=TCONS_00000095|Name=TCONS_00000095|organism=Clytia hemisphaerica|type=transcript|length=1809bp
ctttcagtcgaaaagtaaaagaaacaaacaaaaaagaaaacacaatgAAG
GACATAACATACCATCAATTTAAAGACAAAGAATTATTTTGATATTCTAC
AGAATGGAGAAGACAAATGACAGAATTGAATCTTCCGCTGATTTTCAAGG
GGCTTTTCTTGATGCTATCGAGAAACTCGGGGATGCAGACTGTTCCCAGA
AAGATTATGATCATTTTGTTGAGCTATGTAAGAAAATGACTGATGCAGAT
TTCCTGtgcaaaattattgaaaagctCCTGAATTGGCTACCTGGTAAAAA
TCGAGAAGTTTGTTTTATTGAAATGCTAACTTCATTACTTGAAGCGTTAT
TTGATTTGTTAAACTCTAAAGCTTATAGTGATGTTTATCCAGCAATGCTG
GAAAAAGATTCCTTGTACCCTATTGTTCTTATGCTTTTTGGGACCAAGTG
GCTGTTTCGTCCAGAAATCTTGACAAAATTCATATCCAATCGATTTGTTC
AAGAACCTTTGACTGTCGAAATCATTTTATGGGGTTTACTCAGAAAGGAT
TGTTTTAGTAAAAAAGAGTTAAAATCTAATGATGATTTTTGTACATTGTT
ACGGCATTTTGGCAAGGTTACTATTGAGAATGACAGAGCTCAAGTTCATC
GTTTTTacaaaacaatgatccaatttttaatcaagaattaCGATTGGGTA
TTGGCAAAGGAGCTTGTACCTTTAGTGCTTAATATTTCAGATCACAATGA
AGATTTTGGGTGTTTCTTTGAACTCTTCGAAGGCATGGAATCATTGAAAT
CTGAACAAATCAAAATACTTGTTCAAAGTGGTATTTCATTTTTCGCAAAG
GCTGTTTCTCGTGAAAAATTGTATGGTTTTGGGTCTACTGAAGAATCAGA
GTACGAAAGTATGTTGAAGtatgtaaaaattattttcaaggaTGACTTTT
ATTATGATATAGCAAAACAGCTGATAGCCCTTGACCAGTTCAAGTCCAAA
GATCACGAGAAGATATACAACACAAATAAAAAGAGCATTTTGCAAAGACT
GATCCATGATTTAAAAAAGGATTTCTATTACAATGAAATTTACATTGATC
TAGTACGTGTTCAGATTGAAAATCTAAAGCCACTACAAGACAAAGGGTGT
CCGAAATTGTTTTGGGAGCAGCCAGATGCCGTGTTTGGTTATGACGTAGG
TATTGAAGAATTTTTAGAAAGTGATAAAGTGAGGCTAGTTGTATCTGATG
ACTTTGAAAACGACTTGGAAATTGCACATGCGTGGATCAATGATCACGCT
GGACAATATCTTGAAGATGGTTATAGCTTTTCTGCGGTGGCAAGGCTATC
TACGGAAGGTCATATTTGGGAAAGGAAACGAGATGGATATTTTAAGCTGA
TGAATGAATTGGTAGATTTGGAAACTTTCTTGCAGTGCCCAAAATTAATG
CGTCTGGGCaccaaaagaaaatataatctCAGACAAAGAGAAAGAAATTA
GATGGTCTTCAAATTTCACTTTGAATTACCACTTTTGTCAATAGACTTTA
ATGTATTACTTTAAATTTGACAGAATTGAATTTTAAGACTCATTTATTTG
GCTGACGGCTGACAAAAGTACCATGTTTTTATTAGAAAAAGACTTATTTC
AAGTCCGTAAATAGCAAGAATTTGGAAGATATATATAAAACGAgttaaat
ttggctgaaaaaaaaaaatttgcagtgTGTTTTGGGAAAATCTGccaaat
ttaccaaattttctttctgccaaattttttttcctattGTGAAGTGTAgc
ttattttaa Run BLAST on NCBI protein sequence of TCONS_00000095-protein >TCONS_00000095-protein ID=TCONS_00000095-protein|Name=TCONS_00000095-protein|organism=Clytia hemisphaerica|type=polypeptide|length=465bp
MEKTNDRIESSADFQGAFLDAIEKLGDADCSQKDYDHFVELCKKMTDADF
LCKIIEKLLNWLPGKNREVCFIEMLTSLLEALFDLLNSKAYSDVYPAMLE
KDSLYPIVLMLFGTKWLFRPEILTKFISNRFVQEPLTVEIILWGLLRKDC
FSKKELKSNDDFCTLLRHFGKVTIENDRAQVHRFYKTMIQFLIKNYDWVL
AKELVPLVLNISDHNEDFGCFFELFEGMESLKSEQIKILVQSGISFFAKA
VSREKLYGFGSTEESEYESMLKYVKIIFKDDFYYDIAKQLIALDQFKSKD
HEKIYNTNKKSILQRLIHDLKKDFYYNEIYIDLVRVQIENLKPLQDKGCP
KLFWEQPDAVFGYDVGIEEFLESDKVRLVVSDDFENDLEIAHAWINDHAG
QYLEDGYSFSAVARLSTEGHIWERKRDGYFKLMNELVDLETFLQCPKLMR
LGTKRKYNLRQRERN Run BLAST on NCBI transcript from alignment at sc0000001:1846916..1850074+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000095 ID=TCONS_00000095|Name=TCONS_00000095|organism=Clytia hemisphaerica|type=transcript|length=3159bp|location=Sequence derived from alignment at sc0000001:1846916..1850074+ (Clytia hemisphaerica)
ctttcagtcgaaaagtaaaagaaacaaacaaaaaagaaaacacaatgAAG
GACATAACATACCATCAATTTAAAGACAAAGAATTATTTTGATATTCTAC
AGGTTTTTTATGTTTGACCctattttataatttattcTTCATACAATTTT
GCCCTTGATGCTTTCTAGGCTCCACTCTTTCCAATTCTAGGGAAATTTTT
GCTATAATATTTGTACATTTCACAAATTTATGCCTCTGAAAGCAGCCAGT
TTGAAAcgcaggtcaacaggtcacaggtcaacagggcACAGGACATAGAC
ACAGGTCATACacacaggtcatacaaactacagaACAGAAAAGTATAACT
TACTTCTAGCATAATTTATAAcatgtttcttaaaatattATATGCAATGT
TGTAAGCTATTTAGAACATTCAAGGACAAATCACTAACCCCAAGTATGTT
TTAGGATCCTTAGTAGGATCCTGGCTGTGTGAGTGGATATAGTTTGGGCt
tcttcagaaaaaaattgaatatgaggGGGTGTggggaggatataacattt
tttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNccccccccccccccaaacattgaattttG
TCTGAAAACACcttgcacctgaaaacctcaaattttgcacctgcACTTGA
CTTTTTCCGATTTGTGCACTCAAGATCTCAAGCAAACGTGCCACATTCTG
CAAACTGGGTTTGCCtctaaaacaaggcaaattttgcagacTTTTCAGTA
CCCCCTTAAAAATGTTCTAGATCAATATACCTCCAGTATGATATTTTTGA
CAATAAgtgttttcaaacattttctttttgctttttttaataattaaagc
tgacctgtgtcaataacctgtgacctgttgacctctTAAAGTTGATTTTC
ACATTCAGAatttcacttcattttattcacacaattttgttttgattttc
atgcATTCACCAAATGATACAAGCTTGTGTGTGTTTTCATGCAAGCTGCT
TTAGGGCCTGAAATAGATTTCAACTATCATATCTCCTAACCAATCCTAAC
ATTATACCTGACATTTGCTTActatttttaaacaaacaaagaaaatttgt
ttcTCTATTCCTGCCACTCAAGCACAAAATGTTTAGAATATCTCTTTTAT
TCTGCTTTTTCAGCATAGAGGTGTGCCTCCTTTGTATATCATATGAAAGA
ATATCTATAATCTAAGATTTCATTTATTTCTAGTTTTAAAAActtgttat
ttttcattataAGAATGGAGAAGACAAATGACAGAATTGAATCTTCCGCT
GATTTTCAAGGGGCTTTTCTTGATGCTATCGAGAAACTCGGGGATGCAGA
CTGTTCCCAGAAAGATTATGATCATTTTGTTGAGCTATGTAAGAAAATGA
CTGATGCAGATTTCCTGtgcaaaattattgaaaagctCCTGAATTGGCTA
CCTGGTAAAAATCGAGAAGTTTGTTTTATTGAAATGCTAACTTCATTACT
TGAAGCGTTATTTGATTTGTTAAACTCTAAAGCTTATAGTGATGTTTATC
CAGCAATGCTGGAAAAAGATTCCTTGTACCCTATTGTTCTTATGCTTTTT
GGGACCAAGTGGCTGTTTCGTCCAGAAATCTTGACAAAATTCATATCCAA
TCGATTTGTTCAAGAACCTTTGACTGTCGAAATCATTTTATGGGGTTTAC
TCAGAAAGGATTGTTTTAGTAAAAAAGAGTTAAAATCTAATGATGATTTT
TGTACATTGTTACGGCATTTTGGCAAGGTTACTATTGAGAATGACAGAGC
TCAAGTTCATCGTTTTTacaaaacaatgatccaatttttaatcaagaatt
aCGATTGGGTATTGGCAAAGGAGCTTGTACCTTTAGTGCTTAATATTTCA
GATCACAATGAAGATTTTGGGTGTTTCTTTGAACTCTTCGAAGGCATGGA
ATCATTGAAATCTGAACAAATCAAAATACTTGTTCAAAGTGGTATTTCAT
TTTTCGCAAAGGCTGTTTCTCGTGAAAAATTGTATGGTTTTGGGTCTACT
GAAGAATCAGAGTACGAAAGTATGTTGAAGtatgtaaaaattattttcaa
ggaTGACTTTTATTATGATATAGCAAAACAGCTGATAGCCCTTGACCAGT
TCAAGTCCAAAGATCACGAGAAGATATACAACACAAATAAAAAGAGCATT
TTGCAAAGACTGATCCATGATTTAAAAAAGGATTTCTATTACAATGAAAT
TTACATTGATCTAGTACGTGTTCAGATTGAAAATCTAAAGCCACTACAAG
ACAAAGGGTGTCCGAAATTGTTTTGGGAGCAGCCAGATGCCGTGTTTGGT
TATGACGTAGGTATTGAAGAATTTTTAGAAAGTGATAAAGTGAGGCTAGT
TGTATCTGATGACTTTGAAAACGACTTGGAAATTGCACATGCGTGGATCA
ATGATCACGCTGGACAATATCTTGAAGATGGTTATAGCTTTTCTGCGGTG
GCAAGGCTATCTACGGAAGGCACAGTTGAAGTTATACTGCAAAAAGAACA
TCATATTTGGGAAAGGAAACGAGNGAAGGCACAGTTGAAGTTATACTGCA
AAAAGAACGTCATATTTGGGAAAGGAAACGAGATGGATATTTTAAGCTGA
TGAATGAATTGGTAGATTTGGAAACTTTCTTGCAGTGCCCAAAATTAATG
CGTCTGGGCaccaaaagaaaatataatctCAGACAAAGAGAAAGAAATTA
GATGGTCTTCAAATTTCACTTTGAATTACCACTTTTGTCAATAGACTTTA
ATGTATTACTTTAAATTTGACAGAATTGAATTTTAAGACTCATTTATTTG
GCTGACGGCTGACAAAAGTACCATGTTTTTATTAGAAAAAGACTTATTTC
AAGTCCGTAAATAGCAAGAATTTGGAAGATATATATAAAACGAgttaaat
ttggctgaaaaaaaaaaatttgcagtgTGTTTTGGGAAAATCTGccaaat
ttaccaaattttctttctgccaaattttttttcctattGTGAAGTGTAgc
ttattttaa Coding sequence (CDS) from alignment at sc0000001:1846916..1850074+ >TCONS_00000095 ID=TCONS_00000095|Name=TCONS_00000095|organism=Clytia hemisphaerica|type=CDS|length=2796bp|location=Sequence derived from alignment at sc0000001:1846916..1850074+ (Clytia hemisphaerica)
ATGGAGAAGACAAATGACAGAATTGAATCTTCCGCTGATTTTCAAGGGGC
TTTTCTTGATGCTATCGAGAAACTCGGGGATGCAGACTGTTCCCAGAAAG
ATTATGATCATTTTGTTGAGCTATGTAAGAAAATGACTGATGCAGATTTC
CTGtgcaaaattattgaaaagctCCTGAATTGGCTACCTGGTAAAAATCG
AGAAGTTTGTTTTATTGAAATGCTAACTTCATTACTTGAAGCGTTATTTG
ATTTGTTAAACTCTAAAGCTTATAGTGATGTTTATCCAGCAATGCTGGAA
AAAGATTCCTTGTACCCTATTGTTCTTATGCTTTTTGGGACCAAGTGGCT
GTTTCGTCCAGAAATCTTGACAAAATTCATATCCAATCGATTTGTTCAAG
AACCTTTGACTGTCGAAATCATTTTATGGGGTTTACTCAGAAAGGATTGT
TTTAGTAAAAAAGAGTTAAAATCTAATGATGATTTTTGTACATTGTTACG
GCATTTTGGCAAGGTTACTATTGAGAATGACAGAGCTCAAGTTCATCGTT
TTTacaaaacaatgatccaatttttaatcaagaattaCGATTGGGTATTG
GCAAAGGAGCTTGTACCTTTAGTGCTTAATATTTCAGATCACAATGAAGA
TTTTGGGTGTTTCTTTGAACTCTTCGAAGGCATGGAATCATTGAAATCTG
AACAAATCAAAATACTTGTTCAAAGTGGTATTTCATTTTTCGCAAAGGCT
GTTTCTCGTGAAAAATTGTATGGTTTTGGGTCTACTGAAGAATCAGAGTA
CGAAAGTATGTTGAAGtatgtaaaaattattttcaaggaTGACTTTTATT
ATGATATAGCAAAACAGCTGATAGCCCTTGACCAGTTCAAGTCCAAAGAT
CACGAGAAGATATACAACACAAATAAAAAGAGCATTTTGCAAAGACTGAT
CCATGATTTAAAAAAGGATTTCTATTACAATGAAATTTACATTGATCTAG
TACGTGTTCAGATTGAAAATCTAAAGCCACTACAAGACAAAGGGTGTCCG
AAATTGTTTTGGGAGCAGCCAGATGCCGTGTTTGGTTATGACGTAGGTAT
TGAAGAATTTTTAGAAAGTGATAAAGTGAGGCTAGTTGTATCTGATGACT
TTGAAAACGACTTGGAAATTGCACATGCGTGGATCAATGATCACGCTGGA
CAATATCTTGAAGATGGTTATAGCTTTTCTGCGGTGGCAAGGCTATCTAC
GGAAGGTCATATTTGGGAAAGGAAACGAGATGGATATTTTAAGCTGATGA
ATGAATTGGTAGATTTGGAAACTTTCTTGCAGTGCCCAAAATTAATGCGT
CTGGGCaccaaaagaaaatataatctCAGACAAAGAGAAAGAAATTAGAT
GGAGAAGACAAATGACAGAATTGAATCTTCCGCTGATTTTCAAGGGGCTT
TTCTTGATGCTATCGAGAAACTCGGGGATGCAGACTGTTCCCAGAAAGAT
TATGATCATTTTGTTGAGCTATGTAAGAAAATGACTGATGCAGATTTCCT
GtgcaaaattattgaaaagctCCTGAATTGGCTACCTGGTAAAAATCGAG
AAGTTTGTTTTATTGAAATGCTAACTTCATTACTTGAAGCGTTATTTGAT
TTGTTAAACTCTAAAGCTTATAGTGATGTTTATCCAGCAATGCTGGAAAA
AGATTCCTTGTACCCTATTGTTCTTATGCTTTTTGGGACCAAGTGGCTGT
TTCGTCCAGAAATCTTGACAAAATTCATATCCAATCGATTTGTTCAAGAA
CCTTTGACTGTCGAAATCATTTTATGGGGTTTACTCAGAAAGGATTGTTT
TAGTAAAAAAGAGTTAAAATCTAATGATGATTTTTGTACATTGTTACGGC
ATTTTGGCAAGGTTACTATTGAGAATGACAGAGCTCAAGTTCATCGTTTT
TacaaaacaatgatccaatttttaatcaagaattaCGATTGGGTATTGGC
AAAGGAGCTTGTACCTTTAGTGCTTAATATTTCAGATCACAATGAAGATT
TTGGGTGTTTCTTTGAACTCTTCGAAGGCATGGAATCATTGAAATCTGAA
CAAATCAAAATACTTGTTCAAAGTGGTATTTCATTTTTCGCAAAGGCTGT
TTCTCGTGAAAAATTGTATGGTTTTGGGTCTACTGAAGAATCAGAGTACG
AAAGTATGTTGAAGtatgtaaaaattattttcaaggaTGACTTTTATTAT
GATATAGCAAAACAGCTGATAGCCCTTGACCAGTTCAAGTCCAAAGATCA
CGAGAAGATATACAACACAAATAAAAAGAGCATTTTGCAAAGACTGATCC
ATGATTTAAAAAAGGATTTCTATTACAATGAAATTTACATTGATCTAGTA
CGTGTTCAGATTGAAAATCTAAAGCCACTACAAGACAAAGGGTGTCCGAA
ATTGTTTTGGGAGCAGCCAGATGCCGTGTTTGGTTATGACGTAGGTATTG
AAGAATTTTTAGAAAGTGATAAAGTGAGGCTAGTTGTATCTGATGACTTT
GAAAACGACTTGGAAATTGCACATGCGTGGATCAATGATCACGCTGGACA
ATATCTTGAAGATGGTTATAGCTTTTCTGCGGTGGCAAGGCTATCTACGG
AAGGTCATATTTGGGAAAGGAAACGAGATGGATATTTTAAGCTGATGAAT
GAATTGGTAGATTTGGAAACTTTCTTGCAGTGCCCAAAATTAATGCGTCT
GGGCaccaaaagaaaatataatctCAGACAAAGAGAAAGAAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000095-exon-sc0000001-1491911889:1846916..1847017 | TCONS_00000095-exon-sc0000001-1491911889:1846916..1847017 | Clytia hemisphaerica | exon |
| TCONS_00000095-exon-sc0000001-1510915933:1846916..1847017 | TCONS_00000095-exon-sc0000001-1510915933:1846916..1847017 | Clytia hemisphaerica | exon |
| TCONS_00000095-exon-sc0000001-1575043694:1846916..1847017 | TCONS_00000095-exon-sc0000001-1575043694:1846916..1847017 | Clytia hemisphaerica | exon |
| TCONS_00000095-exon-sc0000001-1491911889:1848279..1849534 | TCONS_00000095-exon-sc0000001-1491911889:1848279..1849534 | Clytia hemisphaerica | exon |
| TCONS_00000095-exon-sc0000001-1510915933:1848279..1849534 | TCONS_00000095-exon-sc0000001-1510915933:1848279..1849534 | Clytia hemisphaerica | exon |
| TCONS_00000095-exon-sc0000001-1575043694:1848279..1849534 | TCONS_00000095-exon-sc0000001-1575043694:1848279..1849534 | Clytia hemisphaerica | exon |
| TCONS_00000095-exon-sc0000001-1491911889:1849624..1850074 | TCONS_00000095-exon-sc0000001-1491911889:1849624..1850074 | Clytia hemisphaerica | exon |
| TCONS_00000095-exon-sc0000001-1510915933:1849624..1850074 | TCONS_00000095-exon-sc0000001-1510915933:1849624..1850074 | Clytia hemisphaerica | exon |
| TCONS_00000095-exon-sc0000001-1575043694:1849624..1850074 | TCONS_00000095-exon-sc0000001-1575043694:1849624..1850074 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:1846916..1850074 + |
Blast
The following BLAST results are available for this feature:
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