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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009499 ID=TCONS_00009499|Name=TCONS_00009499|organism=Clytia hemisphaerica|type=transcript|length=1350bp
TAAATAGCTATAGAGAAGCACTCATCTCTAGACCAATACTTCTGTGGAAG
TGATGACTACCTTCTTTTGTATCCTGACAAAAAATTGTTGACAAAATACC
ATCATCTGAAGaaacttttactgtcaaaaagTATAAAGAATTTCTCAAGG
AACCGTCGTATGAAAGGGTAAAACTATACTTATGCCTTGAGGTAGACTTC
ATGAGTGATAATGTTCCTAAAACGTATCTTGAAAAACAAGAAGACAAGAA
AATAGATGATTATTTTAATTCCAACGCTGCAGACAAGGCTTCAGATTCAG
ATGATGAGAATATTGAGAATATCACGATTGTTCCCAAAAGAATTGAAGTT
AAAGATGATGTGGTTGTCATAAATGCTGATGCAGAGGCGAAAACAAAcct
cactgaaaaaaattatccatGTCCTACTTGTAGAACACTCTTTTCATTAA
TGGATATAGAAACACATGCTGATGAGTGTGCCAATAATGCCCCAAACATG
CCCATAATAATTGATGATGAAGAAACATTTACATCTTATAACGAGGAAGC
AATGATGGAACAAATGCAAACAGAACCCAGAGAAGAGACTCAAGGAACAG
GAAGAGTATTACAGTCAGAAGAGGTACGTGAAATAGTACAAACCACCATC
AATAGCATTGAAGTTAAGGATAATGAAAGTATAAACTTAATTGTATTCAG
AGGAAGCTGTTTCAAAGACTTTCATAATCATTTCAAAAAACCTTGGAGGG
ACAGAATAGCTGCAAAATTATGTATCAAATTTGCTGGAGAAGTTGGTAGG
GATGAAGGTGGCGGTGTCAGCAGAGAGTTTTACACAGaGGCCCTAAAAGA
GGTGAAACAAGACTATTTTTGTGGTGTGGATAATGCTATGGAACCACTGC
TGACCAGTAGTCACTCTATTGTGGACGGAAAAGTTAAATCCATTGGTCAC
TTGTTCGCTTCTTCAATTTGTAACCATGGCCCAGCACCAAACTTTTTAGC
ACCATGGTTGTTTGACTACATTGTTGGTGGAGTTGAGAAAATGTTCAAAG
TTCTACCTGTTGAATTGGATCGTGAATCCCAGTTAGGAGTTATGTATAGC
AAGatAATCCACCTTTAAAGCTAGGATTTCTTCTCCAGTTTGTTACTGGT
GCTGAATCAATCctcccctctggaattccgcaattgattttgaaattcaa
acccCTGTGCGAAAAGGAATAATGCTTACCAGAAGCCTCAACTTGTGCTT
CGATTTTAACCATCCCGCTTCACTTTCAAACAGTCGAAGATATGTTTCAA
AGCTTTTGTGAAGCTTTCAGCCACGTGAAAATGCATGGTTTTGGCAGTTG Run BLAST on NCBI transcript from alignment at sc0000095:651020..656784+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009499 ID=TCONS_00009499|Name=TCONS_00009499|organism=Clytia hemisphaerica|type=transcript|length=5765bp|location=Sequence derived from alignment at sc0000095:651020..656784+ (Clytia hemisphaerica)
TAAATAGCTATAGAGAAGCACTCATCTCTAGACCAATACTTCTGTGGAAG
TGATGACTACCTTCTTTTGTATCCTGACAAAAAATTGTTGACAAAATACC
ATCATCTGAAGaaacttttactgtcaaaaagTATAAAGAATTTCTCAAGG
AACCGTCGTATGAAAGGGTAAAACTATACTTATGCCTTGAGGTAGACTTC
ATGAGTGATAATGTTCCTAAAACGTATCTTGAAAAACAAGAAGACAAGAA
AATAGATGATTATTTTAATTCCAACGCTGCAGACAAGGCTTCAGATTCAG
ATGATGAGAATATTGAGAATATCACGATTGTTCCCAAAAGAATTGAAGTT
AAAGATGATGTGGTTGTCATAAATGCTGATGCAGAGGCGAAAACAAAcct
cactgaaaaaaattatccatGTCCTACTTGTAGAACACTCTTTTCATTAA
TGGATATAGAAACACATGCTGATGAGTGTGCCAATAATGCCCCAAACATG
CCCATAATAATTGATGATGAAGAAACATTTACATCTTATAACGAGGAAGC
AATGATGGAACAAATGCAAACAGAACCCAGAGAAGAGACTCAAGGAACAG
GAAGAGTATTACAGTCAGAAGAGGTACGTGAAATAGTACAAACCACCATC
AATAGCATTGAAGTTAAGGATAATGAAAGTATAAACTTAATTGTATTCAG
AGGAAGCTGTTTCAAAGACTTTCATAATCATTTCAAAAAACCTTGGAGGG
ACAGAATAGCTGCAAAATTATGTATCAAATTTGCTGGAGAAGTTGGTAGG
GATGAAGGTGGCGGTGTCAGCAGAGAGTTTTACACAGGTACATATGAGAA
TTTTAGTAGTAGTATTCTGGGTGGGTAGGTACTTATAGACCTTTCCAATA
ATGCTGCAGCCCTATTAAAAAGTTGACAAATATTGCTAAGGATCGCAGCC
AATGAGACATAGGCAAGTCGTTTCAGATTGGGATGGCTACCGTCAATCAG
GTTCAATTAGTTTCATAAAATGAGCTAGGTAACTTTCATCGATCACCAAT
TAGCAGTCTGGTCTGTGATTTGTACATTTTACAAGCTAGAATAACAACAA
GTTATGATATAACTTCTGGCCTTAATAAATTGGGGACCAGAAAATATTGT
GGTCTGGAGGTGATGAAAGTTACCCTGGCTTATTATAGTAATGCCGATTA
ATGGTACTCTCCTAGCAAAAGTTGGGGGGTtaacatccagataccagacc
catagccgggtggtggtgtccttttttcctttaaaagtttgaaaagttca
GTTGGTATTGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttcccccccc
ccgtttattaatttttaagaatattttcagctgtcaaagagaaggttcct
tattttgctcaaaaaagcctgGTTTAAGCCTAAATTAACCTCATTTTTGG
GTTTTTATTTGGGTTTATTTGGAAACTAAGAGTAATAATTCAACAGGGTG
TCTTCTCTAAACAATGATCATTTTTGTTCTTAGCTATTCtgttttatttc
attatttagaGGCCCTAAAAGAGGTGAAACAAGACTATTTTTGTGGTGTG
GATAATGCTATGGAACCACTGCTGACCAGTAGTCACTCTATTGTGGACGG
AAAAGTTAAATCCATTGGTCACTTGTTCGCTTCTTCAATTTGTAACCATG
GCCCAGCACCAAACTTTTTAGCACCATGGTTGTTTGACTACATTGTTGGT
GGAGTTGAGAAAATGTTCAAAGTTCTACCTGTTGAATTGGATCGTGAATC
CCAGTTAGGAGTTATGTATAGCAAGGTATTTATTTGATGCAGCTAATTAT
TAAAATTTCTGAAACTGTTTGACATCGATCCGTCTTCAGCAAAATCAACA
CGTAAGCATTCAATGAACATTTCATACGACCAAAGCTGTATATCTAAATG
GCAAAATATAATTCTGANATTCGATCCGTCTTCAGCAAAATCAACACGTA
AGCATTCAATGAACATTTCATACGACCAAAGCTGTATATCTAAATGGCAA
AATATAATTCTGAAAACATCCGGATTTGAACGTATTGGTTCAAGGAGGGG
GGTGAATGTTTTAACCTTGATGGGGGCTTTCAGGAAATTTTATAAGAAGT
TGGGGGGAGAAAGAGCAAAAACTAGGTATAATATTTCAATAGATGATTAA
AAATGTGTCTATATTTCATCCATTTGTGTGTTCACTGCaggaaattgtta
tttttgtttaagtTATTATTCAAAATATAGTGAATCGGTTGGACGCAAAT
ATTTTCTTCTAATGGGTGGGATCCCGGAAAAAGGGCAGGTGGGGGAGGAG
ACCAAATGGGGGTTTTGGGCCCCAGATGAGGGGACCTGAAAACCTGGAGG
ACACCATGACAATCtacttcaaacaatttttttgaaggGAATTCTGAGAA
TAGACTCAAATGCAAGTGAATATGCTATAATTTGAATTACTAATGGGTGG
TGGTTGGTGAATATTACATTGAAAGTTGGAGGGGGGGGttgcatcaaatt
ttgaaaggcaGTACCAGTAGGGGGGGGTTGCTCTAGACTAAGAGGGGTTA
GTGGCCCTTTCCAAACTATACCATAATAGGTTGACTGAGGTAATAGGTTG
ATTCGAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTT
CGAACCGGTGTGAAACGGTGCAAAGATCGGTTTTTCGATAACCGGTTCAA
ATCGGGTGttatggaaatcgcttggcaggacacaAATTTCATTACTTGTG
TGTGTCATGAGATcttaattttctcaaaactagCCTTTGTGTCAGTTTGT
GTGCCTTTGTCAATATTTTAAACCCCTTTGGAATTTCACCCCGAttggtg
aaaattaaaaaagaaaaattcatctCAGATTGATTGGTTGGCTcagaaaa
agcaacaaaatggtagatatttaaatcatttgatttaaattgattatatt
gagacaaacTTGTTGGAAACTACTTTTAATTTGATTTATGTCTTCTCTTT
TAGAACCATTTTGCTAAAGAAGATGGAACCATACATACCATTCATTGAAA
GCTTAATGCAAGGATTGCAAGTTTTTCAGTTGCTCGAACCAATTCGTTCA
AATCCGGATGTTTTCGGAATTATATTTTGCCATTCAGATATACTGCCTTG
GTCGTATGAAATGTTCATTGAACGCTTACGTGTTGATTTTGCTGAAGACA
GATCGAATGTCAAACAGTTTCAGCTTTCGTGCTATCGTATCTTTCTCGAG
ATGTGCGACTTGAGCTTCCATTCTGGtaaggttttgaattttttaaagat
tctttttttAGCTTTAATTGAGCTACATTCTTTTACATTCTAAGAATATA
CATACATCGATCTGACGAACGGCTTATTACAAaagaatcaatttttttaa
actaacGATTTCGAAAACACTGGGTGTGTTAAAATCATATTGGGCACGCA
CCCCCTTAAAAAGGGGTTgaaaccacagatatctaagcccgaagggctag
ataggcaactttaagctttctccagcaaaaaaaagtgaagcaaaaatttg
actttttaaatttcgtgccgaNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcgagatcaaaaaac
gtaggcggcaaacgctatttcacatctctcaaaccggtgaaattgcatat
tttagtcacgtgactttggtaggaaattcTTCCAAACCTacgcttcactt
ttcgataaaagccgcaaatctagcccttcgggctttacagatatctgtgg
ttgaaacttttaaaaagaggaggcttttaaaaatttcaattaaaaaggGT
GACCTGGAAAATCTTCTTAAAGGTATCTGACAACTCGCATTTTCATTTGT
ATTGTATTATATTGCCCAGTAATGTACATTAAAAATAGTAAATAgtttaa
atttcttttgttttttagatAATCCACCTTTAAAGCTAGGATTTCTTCTC
CAGTTTGTTACTGGTGCTGAATCAATCctcccctctggaattccgcaatt
gattttgaaattcaaacccCTGTGCGAAAAGGAATAATGCTTACCAGAAG
CCTCAACTTGTGCTTCGATTTTAACCATCCCGCTTCACTTTCAAACAGTC
GAAGATATGTTTCAAAGCTTTTGTGAAGCTTTCAGCCACGTGAAAATGCA
TGGTTTTGGCAGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009499-exon-sc0000095-1491911889:651020..651856 | TCONS_00009499-exon-sc0000095-1491911889:651020..651856 | Clytia hemisphaerica | exon |
| TCONS_00009499-exon-sc0000095-1510915933:651020..651856 | TCONS_00009499-exon-sc0000095-1510915933:651020..651856 | Clytia hemisphaerica | exon |
| TCONS_00009499-exon-sc0000095-1575043694:651020..651856 | TCONS_00009499-exon-sc0000095-1575043694:651020..651856 | Clytia hemisphaerica | exon |
| TCONS_00009499-exon-sc0000095-1491911889:652729..652994 | TCONS_00009499-exon-sc0000095-1491911889:652729..652994 | Clytia hemisphaerica | exon |
| TCONS_00009499-exon-sc0000095-1510915933:652729..652994 | TCONS_00009499-exon-sc0000095-1510915933:652729..652994 | Clytia hemisphaerica | exon |
| TCONS_00009499-exon-sc0000095-1575043694:652729..652994 | TCONS_00009499-exon-sc0000095-1575043694:652729..652994 | Clytia hemisphaerica | exon |
| TCONS_00009499-exon-sc0000095-1491911889:656538..656784 | TCONS_00009499-exon-sc0000095-1491911889:656538..656784 | Clytia hemisphaerica | exon |
| TCONS_00009499-exon-sc0000095-1510915933:656538..656784 | TCONS_00009499-exon-sc0000095-1510915933:656538..656784 | Clytia hemisphaerica | exon |
| TCONS_00009499-exon-sc0000095-1575043694:656538..656784 | TCONS_00009499-exon-sc0000095-1575043694:656538..656784 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000095 | supercontig | sc0000095:651020..656784 + |
Blast
The following BLAST results are available for this feature:
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