TCONS_00007804 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007804
Unique NameTCONS_00007804
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1085

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007804 ID=TCONS_00007804|Name=TCONS_00007804|organism=Clytia hemisphaerica|type=transcript|length=1085bp
CTGGCTTGTGTAGAAAACTTATAATCTTTATCTCAGGCTCTTGTACTATG
ATGGGTAGAAGTTGTAGCTTTCACTTTTTCAAGAGTTTCTTCCTTTTTCG
AGACATCTTGAAATAATGAAAGGAAGAATATTTTTCGAACAAGTTTCTAA
TGTTAACGTGAAAATGCACCCTTGTTAATGGTTTTCATAATAGCAATCag
taatttttgtattttttatatatttcagaactataaaatacaaaaaaatg
ggGTGTACGATAAGTCAAGTTGATAAGGAAGCCGTAGAGAGGAGTAAAAT
GATAGATAAAAACCTAAAAGCTGATGGTGAAAGATCAGCCAGAGAGGTCA
AACTGTTACTACTTGgggCTGGTGAGTCTGGTAAAAGTACTATAGTGAAA
CAAAtgaaAATTATTCATGAGAGTGGCTATTCAGAAGACGAATGCGTACA
GTATAAACCTGTCGTCTACAGCAACACTATACAATCTATGTTAGCGATCA
TTCGCGCTTTGGGAACCCTAAACATCGAATTTAGTGTACCAGACCGTCAA
GAAGATGCCAGGCAGCTCTTTTCACTCGCTGGTAGTGTCGAGGATGGCTC
TTTTACGCCGGAACTTATTTCCATCATGAAACGGCTATGGGCCGATGAAG
GAGTGCAACAATGTTTCCAACGAGCTCGTGAATATCAATTAAACGATTCC
GCAGGATACTACCTAGCGGCTTTAGACAGAATCGGAGCACCAGAGTACGT
ACCTACACAACAAGATGTATTACGAACTCGTGTCAAAACTACAGGAATTG
TCGAAACTCATTTCGTCTTCAAAGATCTACATTTCAAAATGTTCGATGTC
GGAGGTCAGAGATCGGAACGTAAGAAGTGGATCCATTGTTTCGAGGGAGT
CACTGCCATTATCTTCTGTGTGGCTTTGAGTGCTTACGATTTGGTCCTAG
CAGAAGACGAAGAAACGGTACGTCTGCAATTATTGTttgaatttatcaaa
aattacgAGTTGTGTGTCTTTATGTTATGCCTAAAGTGAAAAGACATTAC
AAAATATACAGAAAAATGTTTAGTTTCTATTGCGC
Run BLAST on NCBI

protein sequence of TCONS_00007804-protein

>TCONS_00007804-protein ID=TCONS_00007804-protein|Name=TCONS_00007804-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MGCTISQVDKEAVERSKMIDKNLKADGERSAREVKLLLLGAGESGKSTIV
KQMKIIHESGYSEDECVQYKPVVYSNTIQSMLAIIRALGTLNIEFSVPDR
QEDARQLFSLAGSVEDGSFTPELISIMKRLWADEGVQQCFQRAREYQLND
SAGYYLAALDRIGAPEYVPTQQDVLRTRVKTTGIVETHFVFKDLHFKMFD
VGGQRSERKKWIHCFEGVTAIIFCVALSAYDLVLAEDEETVRLQLLFEFI
KNYELCVFMLCLK
Run BLAST on NCBI

transcript from alignment at sc0000080:39260..46062+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007804 ID=TCONS_00007804|Name=TCONS_00007804|organism=Clytia hemisphaerica|type=transcript|length=6803bp|location=Sequence derived from alignment at sc0000080:39260..46062+ (Clytia hemisphaerica)
CTGGCTTGTGTAGAAAACTTATAATCTTTATCTCAGGCTCTTGTACTATG
ATGGGTAGAAGTTGTAGCTTTCACTTTTTCAAGAGTTTCTTCCTTTTTCG
AGACATCTTGAAATAATGAAAGGAAGAATATTTTTCGAACAAGTTTCTAA
TGTTAACGTGAAAATGCACCCTTGTTAATGGTTTTCATAATAGCAATCag
taatttttgtattttttatatatttcagaactataaaatacaaaaaaatg
ggGTGTACGATAAGTCAAGTTGATAAGGAAGCCGTAGAGAGGAGTAAAAT
GATAGATAAAAACCTAAAAGCTGATGGTGAAAGATCAGCCAGAGAGGTCA
AACTGTTACTACTTGGTGAGTTGAATTAATGCTtattttggaagtttttt
gGTTATCCATTTTACACATTGATTGTGCTACTGTTTAAAACATGGATTTA
TTGTgattggttttatttttttaagttttgatgAAGACAAGTTAAATCGT
ATGtagataccgtcaactgctctaacttgggacgattggttgaaacatgg
gactggttgatatctggcctgtattttcacttacttttatatctctttga
caacaaatttgttttgatatataaaCTCCACCatgtttatcaatcatact
tcttcgttcctcttacagtgcacagacactcgcgtgtgttccactacgga
ttttttcatATTGCGATTTAAAagctactcggtgcgaaagagaaatcgtg
tattttttaatacgccgttcatttactcaaatcaaatgactttgaaggct
cggtgaaatggtggccaaattgccgtcctatgttttgtcagatagtccca
agttagagcagttgacagtacatGGAAAGTCAACGACATAAATGGACCTT
GGACACAAcaatattttaaacaattttccaGACAATGTCATCAAAATGAG
CTAAAATAATAAAGGGTCACTCATGTCACATAAAATGTGCAAAGGGCTGG
GTGGGCTGGGGTGGGTCAGAGGCTCTAACGCTAAGAAATCTGCCTATAAT
ATCTATGTTTTAAAACAAGAACTCAGACAGAGATtgggcagttccagaaa
aaaaccattacccccccccctgtggacgacagggttttttggattttttt
ctcacttgaaaatcctaagaaatttgaaaaaggttttaGAAAATCCAGGA
TTTTTCCTCATTATTTAATCATATATAtcggaaaatccataaaatttgct
ctatATTCTTACCAAGTAttggaaaatccataaaatttgctctattttct
tgGCAAGTATCGGAAAATCCAAgattttcctataaaaaatcttaatttta
cgaaaatcctgaagtttttcaaaagtaaattgttacgGAAAATCCATGTC
GTCCACAGGGGGGTAACAGACTATAACTTTGAACCGCCCAATTTGAGCAA
TAGCAGCTGTAAAAGACCTTTTCCAAAGGCTTTTGTAGGAAGTGGTACAA
TTTTGTACCCAAGAATTAGCACCAAAGACAATATAAATACATTATCTTAG
CGTCAGGATAACAtgataccgtaagttggtctaatgtcgacatccctctt
ctaatttcgactcCCAgttttagagacaggaataatattaaggtcagaat
cactggtTGCTAAGCAAAGGAATATAGTTTCAATAAGTGATTCCGACCTT
TCcactattcctatctctaaagaagggtgtcgagaTTAAAAGAGGGATGT
CGACCTTAGACCAAGTTATGGTAGTGTTCAATTTCTTGGCActtgatttt
gatctttttgggGAGCCAAAAAACTTATCACATGCAGTGAATGTCTTGGg
gatgggtgtaggttgcagaAATTTACTTATGGCGAAGAAATTTTCACCAG
AAATATCTTTTctttcaatgtttgttttttattgctttactgttttgaaa
atatatataaacttAGGAAGTAGTATGTGAACTGACGaaacaatgatgaa
attttaagattaagTTTTATTGCCACAGTGACATTATTATGGAAGGAGGT
TGGGGATTCTCAAATTATTGGTCGCTAAGATtatgtaaaagattttttgt
ttgtataaaatttatcTTTGGTGTGGTTTTaacgttttcaaatttgctaa
aatttatCAACTTTATGTTTCCAGTTCAGGCCAAATtctagaaaggcagg
gcagcgtcCGCTAGAgaccaaaaagggcacttttctgctgtttttttttt
gcatggtACTTGCTCATACTGTTGGTGCTTGTTACCAACTAACTCCAATT
TTGGGTTGAGTGATTGTACAACTCATTTTAAGCTAGTACCtgttattaaa
tttttattttggttggGTAAATTGGGTAAGGATTTCTCAAATTTGGCAAT
TAAGAACAAAGATCTTCCTGATTCTCCCTCAAAATTGTCAGATTTCATTA
AATGAAAACATattatactgattttctaattttgaaaaatggaatTGTCA
CATAAGATTTTCCAGAATTttaagctgggagcaaaccatAAAACATGGAT
CTTCAAACTTTTAAACTCTCTTGTTGAATGGTTTGCACAGCATTTTCAAG
ATTGTCTCAAACATTTATTTATTGTATGTTGGCCCCCTAGATGTTTACAA
TTTCGAAATAGAAGTCATATTCAATAAAAAACACctatctgattggctaa
aaaagTGTTAAGGTGCAtgctatttatttttattattttaaactGTTATT
ATTTCAGAATGAGGCAGAAgttaaaattgactaaagataGTTCCCTGAGT
TCCCTGAGTTCCCATGATTATAACCATCAAACAGTGCATTAGTGTAGTAC
TGTTACAAAAACATATTGTAAATAGGAAAAACTGTTTTGGAATATCCCCA
GAACTTCTCTATAGGAGTTATCTGCTCGATTATGTTGCCCCAAGAATTGC
TGGGGACAatcccttttttagaaaatttaaagaacTAACAAATTAGTTAG
GGCATTAcactttataagcatacaaTAAGTTTTTGGGAGCCTTATGCTtt
gcaaaatttatttttgagccttaaatatGCTTATGCCATGGTATAAATTG
CACATCATATTATTGTAATTTTTGGAGATTGAATGCTTTGAAATTCTATA
TACAGAGGCCCAGCATATCCCTCCACAGCTCGTGATCTGCCATTGAAGTA
CCCAGTTCCTCGATCTCTAGCCCTTTTTCCtgtttcaaaatatcaagaaa
tgtgCGCTTTCTCAAGTGCCTAGGCAGGCCTAGGGCCTGCAGGACATTAA
GGTAGATTTTAGATAAGATTTCGTTTTTCGCACATAAACAGTGACCTGAG
AAAGAGAGCAGTTTAATTTGGCAGAGTAATTTAAGcctggatatgcttat
aagtatACAAAGGAATATTACCCTGGGTCAAGTAATGACTTGACTTGTTG
GCtattattttcttataatatTATTGAAAATATAGTGAATTACTTTAGAC
AAAAAATGACGAGTCTAATGATTTAAACAcaattgtttattttctttgaa
aaaacaatgaaTTTTCTTAATAACAGACAACTCTATGCTGTGGAGATCCA
TCATCATGAAAGAGCCAAGTGCATTTCTTGAAGATAACGCTTAAAAAATA
AAGCAATCAGATTTTCATATTCTTGACACCATTCCAAAgtttccaaaaaa
ctgaaaagttttataaaaagtaaatctggtacactctttttttataagca
taacgtttataagcatacttacgCTCAAATATGGCAAAAAATAtgcataa
tgctaagcatacctccaagctAAAATGCAGAGCCAAATTAATTTTCTGcc
ttaaaaaattcgaaattttcatgaacccaaagaaaatcaaaaatggaaat
ctaagcatataaataagcataaattgaggctgaaaatgagattttgctaa
gcatataTTGAGCCTCGACCTAATTTTCccttttgcttataaaaaaagag
tgaatGATGCTGCTTAACTTGTGATCGGTCATGTGGAATTTCAGACTTTT
TTGCTATGTTTGGACCAAAATTTAATGTCTTATCTTTTGTGGCCctaaaa
aattgcaaaacttTCACAAATCAGCCAAAAATTTGTTGAGAATGGCCTGA
AATGGCTCTTTAAAAGACAATTTCTTTGGATAATAAaggaatttttgaat
ttgaattaatGATTTACTTGGATAAATTCATTTGAAACTGTATGTTTGGT
ATCATTCTGTATGGAGATTTTCAAATCACTGCTGTATTGAAACGATTCAA
AAAGAGAatagtttttcaagattttcattttatacaGCATTTCATTGGTT
TTATATGATACCTTCATATAAACTTGTTCTATGATACGAAAAAACCTTTA
GGCAGTTATACCACATCTTAGATTTCTACAAGTATTGATTCAGTTGCTAA
GGGGTAGCTTattatcaaaattaaattagGATGAGAAAATTCTTCTCTTT
CTTTAAGCTCACTCTCTTTAGAAAGAATTCTTCTGCCAGatggtttttca
tgttttgtttcTACTTGTAACGCAAGAAAGAAGATTTTTCTTcgtgaata
aaaaaaaatgaaactcaAAAATAAAGCATGAGTTTATTTTGGATCttaat
ataaagtttttttatcatcaacATGGATATCCCaaataatgaaaatgatt
tcaagcaaaaaagacATGTTTTGATTTCGAATTTTAATGCTTTGTAGCCA
AGGCAACACTTTTTAACACTAGATTTAATTTCTATTTTCTGTTATCTACC
TTACTTaataatttacgggaaaacagATTCTATGTTAAATTAATTTGATA
AagaattcctttgttttctttttcaggggCTGGTGAGTCTGGTAAAAGTA
CTATAGTGAAACAAAtgaagtatgtatttttttatgttttctccCTGTTT
TTCTTTCCCAATATGCCGACCTAATCAATTTTTCAAGGAAGAACAGATTT
TGTTATCcacaaataaaaaaacttagTTTGAATGTGATGATGTACCCAAT
ATAATAAAGGACTGGTCATAATAAATGCACTACACGTATATTACACTATT
TCCATCATTTGTGTTATAGAATTATTCATGAGAGTGGCTATTCAGAAGAC
GAATGCGTACAGTATAAACCTGTCGTCTACAGCAACACTATACAATCTAT
GTTAGCGATCATTCGCGCTTTGGGAACCCTAAACATCGAATTTAGTGTAC
CAGACCGTCAAGTAGGCTCAtttaattctatttttattGTGATTCAGTTT
TCCTTATCATATACAGCACTTAATCTGAAGTACATAGCTTTTAATAACCA
ACTTAATTACATCCTAGTGGGTTgatttaattagtttttataATGTGTGC
ATGTCATTCACAGCGTGAAATGATAAACATGTGTCCTCTTAGTTACAAAT
TCCTCTAAAggattttcaccaaattagaTACTTCCTATCTTCCATAGAAA
TAGACAGCTCAGCTTACATTAGCGAATCATTCGATACAATAAGGGAGTTA
ATTGTCTGcacacaatttttttccaatttgtaAATCTCATTAACATTTCC
CTGCTATAAGTGGTTTTTCTATTAAATGGTTTGCGTATCAATGCTTATTG
AGAGTAAAACTATCATAATCATCATCTTGTTAGAAAACGGTTAGTTGCAA
ATATATTACATATTATAttacatatatttttctgaaCAAGCCTTTTATAC
TTTTATAGGAAGATGCCAGGCAGCTCTTTTCACTCGCTGGTAGTGTCGAG
GATGGCTCTTTTACGCCGGAACTTATTTCCATCATGAAACGGCTATGGGC
CGATGAAGGAGTGCAACAATGTTTCCAACGAGCTCGTGAATATCAATTAA
ACGATTCCGCAGGATAGTAAGTGTCAACACATCCATTCCAATACACAGGC
TAAATATTTAAGTTGTTCCAAGATTCTAGTCTAGATATGCTTATGACTTT
TATGATGCGTTCAGAAGAAATATAATGCAATTTTCAATCAAGTCATTTTA
TAGATATAGTTCAACTCTTTTACTCTGCACGGAGAATGTAGTGGGAAAAA
TGGTTTCAACTTTGATCATTTTACCATCTTTTTTTCAGCTACCTAGCGGC
TTTAGACAGAATCGGAGCACCAGAGTACGTACCTACACAACAAGATGTAT
TACGAACTCGTGTCAAAACTACAGGAATTGTCGAAACTCATTTCGTCTTC
AAAGATCTACATTTCAAGTAAGACCTAATTCTCCTCACTCTGACgcttat
tatatttttttggtttgaagAACGCCCACTGTGAGCATGTTCTAAAACGA
TTACTGCGTGCGTAGGACGTTATTAAAACGGTTCGTCGATTATATTACCT
CTATGAGAGAAATTTGTATAGTTCCTTCTTTCGTATTACTGGGCCTTCCA
CCTATACTACTGAATCACAAAGTTCCCGACGTGTCCAATATTATTATCTT
TCAACAATTTCCCTTCAGAAGAATTTTAAACCGTCTAAATATTCTCCTAT
TTCAGAATGTTCGATGTCGGAGGTCAGAGATCGGAACGTAAGAAGTGGAT
CCATTGTTTCGAGGGAGTCACTGCCATTATCTTCTGTGTGGCTTTGAGTG
CTTACGATTTGGTCCTAGCAGAAGACGAAGAAACGGTACGTCTGCAATTA
TTGTttgaatttatcaaaaattacgAGTTGTGTGTCTTTATGTTATGCCT
AAAGTGAAAAGACATTACAAAATATACAGAAAAATGTTTAGTTTCTATTG
CGC

Coding sequence (CDS) from alignment at sc0000080:39260..46062+

>TCONS_00007804 ID=TCONS_00007804|Name=TCONS_00007804|organism=Clytia hemisphaerica|type=CDS|length=4752bp|location=Sequence derived from alignment at sc0000080:39260..46062+ (Clytia hemisphaerica)
atgggGTGTACGATAAGTCAAGTTGATAAGGAAGCCGTAGAGAGGAGTAA
AATGATAGATAAAAACCTAAAAGCTGATGGTGAAAGATCAGCCAGAGAGG
TCAAACTGTTACTACTTGgggCTGGTGAGTCTGGTAAAAGTACTATAGTG
AAACAAAtgaaAATTATTCATGAGAGTGGCTATTCAGAAGACGAATGCGT
ACAGTATAAACCTGTCGTCTACAGCAACACTATACAATCTATGTTAGCGA
TCATTCGCGCTTTGGGAACCCTAAACATCGAATTTAGTGTACCAGACCGT
CAAGAAGATGCCAGGCAGCTCTTTTCACTCGCTGGTAGTGTCGAGGATGG
CTCTTTTACGCCGGAACTTATTTCCATCATGAAACGGCTATGGGCCGATG
AAGGAGTGCAACAATGTTTCCAACGAGCTCGTGAATATCAATTAAACGAT
TCCGCAGGATACTACCTAGCGGCTTTAGACAGAATCGGAGCACCAGAGTA
CGTACCTACACAACAAGATGTATTACGAACTCGTGTCAAAACTACAGGAA
TTGTCGAAACTCATTTCGTCTTCAAAGATCTACATTTCAAAATGTTCGAT
GTCGGAGGTCAGAGATCGGAACGTAAGAAGTGGATCCATTGTTTCGAGGG
AGTCACTGCCATTATCTTCTGTGTGGCTTTGAGTGCTTACGATTTGGTCC
TAGCAGAAGACGAAGAAACGGTACGTCTGCAATTATTGTttgaatttatc
aaaaattacgAGTTGTGTGTCTTTATGTTATGCCTAAAGTGAatgggGTG
TACGATAAGTCAAGTTGATAAGGAAGCCGTAGAGAGGAGTAAAATGATAG
ATAAAAACCTAAAAGCTGATGGTGAAAGATCAGCCAGAGAGGTCAAACTG
TTACTACTTGgggCTGGTGAGTCTGGTAAAAGTACTATAGTGAAACAAAt
gaaAATTATTCATGAGAGTGGCTATTCAGAAGACGAATGCGTACAGTATA
AACCTGTCGTCTACAGCAACACTATACAATCTATGTTAGCGATCATTCGC
GCTTTGGGAACCCTAAACATCGAATTTAGTGTACCAGACCGTCAAGAAGA
TGCCAGGCAGCTCTTTTCACTCGCTGGTAGTGTCGAGGATGGCTCTTTTA
CGCCGGAACTTATTTCCATCATGAAACGGCTATGGGCCGATGAAGGAGTG
CAACAATGTTTCCAACGAGCTCGTGAATATCAATTAAACGATTCCGCAGG
ATACTACCTAGCGGCTTTAGACAGAATCGGAGCACCAGAGTACGTACCTA
CACAACAAGATGTATTACGAACTCGTGTCAAAACTACAGGAATTGTCGAA
ACTCATTTCGTCTTCAAAGATCTACATTTCAAAATGTTCGATGTCGGAGG
TCAGAGATCGGAACGTAAGAAGTGGATCCATTGTTTCGAGGGAGTCACTG
CCATTATCTTCTGTGTGGCTTTGAGTGCTTACGATTTGGTCCTAGCAGAA
GACGAAGAAACGGTACGTCTGCAATTATTGTttgaatttatcaaaaatta
cgAGTTGTGTGTCTTTATGTTATGCCTAAAGTGAatgggGTGTACGATAA
GTCAAGTTGATAAGGAAGCCGTAGAGAGGAGTAAAATGATAGATAAAAAC
CTAAAAGCTGATGGTGAAAGATCAGCCAGAGAGGTCAAACTGTTACTACT
TGgggCTGGTGAGTCTGGTAAAAGTACTATAGTGAAACAAAtgaaAATTA
TTCATGAGAGTGGCTATTCAGAAGACGAATGCGTACAGTATAAACCTGTC
GTCTACAGCAACACTATACAATCTATGTTAGCGATCATTCGCGCTTTGGG
AACCCTAAACATCGAATTTAGTGTACCAGACCGTCAAGAAGATGCCAGGC
AGCTCTTTTCACTCGCTGGTAGTGTCGAGGATGGCTCTTTTACGCCGGAA
CTTATTTCCATCATGAAACGGCTATGGGCCGATGAAGGAGTGCAACAATG
TTTCCAACGAGCTCGTGAATATCAATTAAACGATTCCGCAGGATACTACC
TAGCGGCTTTAGACAGAATCGGAGCACCAGAGTACGTACCTACACAACAA
GATGTATTACGAACTCGTGTCAAAACTACAGGAATTGTCGAAACTCATTT
CGTCTTCAAAGATCTACATTTCAAAATGTTCGATGTCGGAGGTCAGAGAT
CGGAACGTAAGAAGTGGATCCATTGTTTCGAGGGAGTCACTGCCATTATC
TTCTGTGTGGCTTTGAGTGCTTACGATTTGGTCCTAGCAGAAGACGAAGA
AACGGTACGTCTGCAATTATTGTttgaatttatcaaaaattacgAGTTGT
GTGTCTTTATGTTATGCCTAAAGTGAatgggGTGTACGATAAGTCAAGTT
GATAAGGAAGCCGTAGAGAGGAGTAAAATGATAGATAAAAACCTAAAAGC
TGATGGTGAAAGATCAGCCAGAGAGGTCAAACTGTTACTACTTGgggCTG
GTGAGTCTGGTAAAAGTACTATAGTGAAACAAAtgaaAATTATTCATGAG
AGTGGCTATTCAGAAGACGAATGCGTACAGTATAAACCTGTCGTCTACAG
CAACACTATACAATCTATGTTAGCGATCATTCGCGCTTTGGGAACCCTAA
ACATCGAATTTAGTGTACCAGACCGTCAAGAAGATGCCAGGCAGCTCTTT
TCACTCGCTGGTAGTGTCGAGGATGGCTCTTTTACGCCGGAACTTATTTC
CATCATGAAACGGCTATGGGCCGATGAAGGAGTGCAACAATGTTTCCAAC
GAGCTCGTGAATATCAATTAAACGATTCCGCAGGATACTACCTAGCGGCT
TTAGACAGAATCGGAGCACCAGAGTACGTACCTACACAACAAGATGTATT
ACGAACTCGTGTCAAAACTACAGGAATTGTCGAAACTCATTTCGTCTTCA
AAGATCTACATTTCAAAATGTTCGATGTCGGAGGTCAGAGATCGGAACGT
AAGAAGTGGATCCATTGTTTCGAGGGAGTCACTGCCATTATCTTCTGTGT
GGCTTTGAGTGCTTACGATTTGGTCCTAGCAGAAGACGAAGAAACGGTAC
GTCTGCAATTATTGTttgaatttatcaaaaattacgAGTTGTGTGTCTTT
ATGTTATGCCTAAAGTGAatgggGTGTACGATAAGTCAAGTTGATAAGGA
AGCCGTAGAGAGGAGTAAAATGATAGATAAAAACCTAAAAGCTGATGGTG
AAAGATCAGCCAGAGAGGTCAAACTGTTACTACTTGgggCTGGTGAGTCT
GGTAAAAGTACTATAGTGAAACAAAtgaaAATTATTCATGAGAGTGGCTA
TTCAGAAGACGAATGCGTACAGTATAAACCTGTCGTCTACAGCAACACTA
TACAATCTATGTTAGCGATCATTCGCGCTTTGGGAACCCTAAACATCGAA
TTTAGTGTACCAGACCGTCAAGAAGATGCCAGGCAGCTCTTTTCACTCGC
TGGTAGTGTCGAGGATGGCTCTTTTACGCCGGAACTTATTTCCATCATGA
AACGGCTATGGGCCGATGAAGGAGTGCAACAATGTTTCCAACGAGCTCGT
GAATATCAATTAAACGATTCCGCAGGATACTACCTAGCGGCTTTAGACAG
AATCGGAGCACCAGAGTACGTACCTACACAACAAGATGTATTACGAACTC
GTGTCAAAACTACAGGAATTGTCGAAACTCATTTCGTCTTCAAAGATCTA
CATTTCAAAATGTTCGATGTCGGAGGTCAGAGATCGGAACGTAAGAAGTG
GATCCATTGTTTCGAGGGAGTCACTGCCATTATCTTCTGTGTGGCTTTGA
GTGCTTACGATTTGGTCCTAGCAGAAGACGAAGAAACGGTACGTCTGCAA
TTATTGTttgaatttatcaaaaattacgAGTTGTGTGTCTTTATGTTATG
CCTAAAGTGAatgggGTGTACGATAAGTCAAGTTGATAAGGAAGCCGTAG
AGAGGAGTAAAATGATAGATAAAAACCTAAAAGCTGATGGTGAAAGATCA
GCCAGAGAGGTCAAACTGTTACTACTTGgggCTGGTGAGTCTGGTAAAAG
TACTATAGTGAAACAAAtgaaAATTATTCATGAGAGTGGCTATTCAGAAG
ACGAATGCGTACAGTATAAACCTGTCGTCTACAGCAACACTATACAATCT
ATGTTAGCGATCATTCGCGCTTTGGGAACCCTAAACATCGAATTTAGTGT
ACCAGACCGTCAAGAAGATGCCAGGCAGCTCTTTTCACTCGCTGGTAGTG
TCGAGGATGGCTCTTTTACGCCGGAACTTATTTCCATCATGAAACGGCTA
TGGGCCGATGAAGGAGTGCAACAATGTTTCCAACGAGCTCGTGAATATCA
ATTAAACGATTCCGCAGGATACTACCTAGCGGCTTTAGACAGAATCGGAG
CACCAGAGTACGTACCTACACAACAAGATGTATTACGAACTCGTGTCAAA
ACTACAGGAATTGTCGAAACTCATTTCGTCTTCAAAGATCTACATTTCAA
AATGTTCGATGTCGGAGGTCAGAGATCGGAACGTAAGAAGTGGATCCATT
GTTTCGAGGGAGTCACTGCCATTATCTTCTGTGTGGCTTTGAGTGCTTAC
GATTTGGTCCTAGCAGAAGACGAAGAAACGGTACGTCTGCAATTATTGTt
tgaatttatcaaaaattacgAGTTGTGTGTCTTTATGTTATGCCTAAAGT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004433XLOC_004433Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007804-proteinTCONS_00007804-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007804-exon-sc0000080-1491911889:39260..39624TCONS_00007804-exon-sc0000080-1491911889:39260..39624Clytia hemisphaericaexon
TCONS_00007804-exon-sc0000080-1510915933:39260..39624TCONS_00007804-exon-sc0000080-1510915933:39260..39624Clytia hemisphaericaexon
TCONS_00007804-exon-sc0000080-1575043694:39260..39624TCONS_00007804-exon-sc0000080-1575043694:39260..39624Clytia hemisphaericaexon
TCONS_00007804-exon-sc0000080-1491911889:44136..44178TCONS_00007804-exon-sc0000080-1491911889:44136..44178Clytia hemisphaericaexon
TCONS_00007804-exon-sc0000080-1510915933:44136..44178TCONS_00007804-exon-sc0000080-1510915933:44136..44178Clytia hemisphaericaexon
TCONS_00007804-exon-sc0000080-1575043694:44136..44178TCONS_00007804-exon-sc0000080-1575043694:44136..44178Clytia hemisphaericaexon
TCONS_00007804-exon-sc0000080-1491911889:44379..44520TCONS_00007804-exon-sc0000080-1491911889:44379..44520Clytia hemisphaericaexon
TCONS_00007804-exon-sc0000080-1510915933:44379..44520TCONS_00007804-exon-sc0000080-1510915933:44379..44520Clytia hemisphaericaexon
TCONS_00007804-exon-sc0000080-1575043694:44379..44520TCONS_00007804-exon-sc0000080-1575043694:44379..44520Clytia hemisphaericaexon
TCONS_00007804-exon-sc0000080-1491911889:45018..45175TCONS_00007804-exon-sc0000080-1491911889:45018..45175Clytia hemisphaericaexon
TCONS_00007804-exon-sc0000080-1510915933:45018..45175TCONS_00007804-exon-sc0000080-1510915933:45018..45175Clytia hemisphaericaexon
TCONS_00007804-exon-sc0000080-1575043694:45018..45175TCONS_00007804-exon-sc0000080-1575043694:45018..45175Clytia hemisphaericaexon
TCONS_00007804-exon-sc0000080-1491911889:45398..45526TCONS_00007804-exon-sc0000080-1491911889:45398..45526Clytia hemisphaericaexon
TCONS_00007804-exon-sc0000080-1510915933:45398..45526TCONS_00007804-exon-sc0000080-1510915933:45398..45526Clytia hemisphaericaexon
TCONS_00007804-exon-sc0000080-1575043694:45398..45526TCONS_00007804-exon-sc0000080-1575043694:45398..45526Clytia hemisphaericaexon
TCONS_00007804-exon-sc0000080-1491911889:45815..46062TCONS_00007804-exon-sc0000080-1491911889:45815..46062Clytia hemisphaericaexon
TCONS_00007804-exon-sc0000080-1510915933:45815..46062TCONS_00007804-exon-sc0000080-1510915933:45815..46062Clytia hemisphaericaexon
TCONS_00007804-exon-sc0000080-1575043694:45815..46062TCONS_00007804-exon-sc0000080-1575043694:45815..46062Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:39260..46062 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
85.0494	82.6601	72.6815	74.5171	256.423	205.52	251.128	271.029	241.253	247.934	186.119	170.844	130.824	116.84	95.8978	102.913	159.281	175.629	107.975	147.812	140.928	146.685	111.54	128.636	132.97	147.972	165.933	155.752	135.888	142.113
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001019Gprotein_alpha_su
IPR001408Gprotein_alpha_I
IPR011025GproteinA_insert
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
GO:0007188adenylate cyclase-modulating G-protein coupled receptor signaling pathway
GO:0007165signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0003924GTPase activity
GO:0004871signal transducer activity
GO:0031683G-protein beta/gamma-subunit complex binding
GO:0019001guanyl nucleotide binding
GO:0005525GTP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007188 adenylate cyclase-modulating G-protein coupled receptor signaling pathway
biological_process GO:0007186 G-protein coupled receptor signaling pathway
biological_process GO:0007165 signal transduction
molecular_function GO:0031683 G-protein beta/gamma-subunit complex binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0019001 guanyl nucleotide binding
molecular_function GO:0004871 signal transducer activity
Blast
[Close]
BLAST of TCONS_00007804 vs. Swiss-Prot (Human)
Match: GNAI1 (Guanine nucleotide-binding protein G(i) subunit alpha-1 OS=Homo sapiens GN=GNAI1 PE=1 SV=2)

HSP 1 Score: 402.519 bits (1033), Expect = 1.436e-138
Identity = 194/255 (76.08%), Postives = 214/255 (83.92%), Query Frame = 2 
Query:  248 MGCTISQVDKEAVERSKMIDKNLKADGERSAREVKLLLLGAGESGKSTIVKQMKIIHESGYSEDECVQYKPVVYSNTIQSMLAIIRALGTLNIEFSVPDRQEDARQLFSLAGSVEDGSFTPELISIMKRLWADEGVQQCFQRAREYQLNDSAGYYLAALDRIGAPEYVPTQQDVLRTRVKTTGIVETHFVFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSAYDLVLAEDEETVRLQ---LLFEFIKN 1003
            MGCT+S  DK AVERSKMID+NL+ DGE++AREVKLLLLGAGESGKSTIVKQMKIIHE+GYSE+EC QYK VVYSNTIQS++AIIRA+G L I+F    R +DARQLF LAG+ E+G  T EL  ++KRLW D GVQ CF R+REYQLNDSA YYL  LDRI  P Y+PTQQDVLRTRVKTTGIVETHF FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALS YDLVLAEDEE  R+     LF+ I N
Sbjct:    1 MGCTLSAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 255
The following BLAST results are available for this feature:
BLAST of TCONS_00007804 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GNAI11.436e-13876.08Guanine nucleotide-binding protein G(i) subunit al... [more]
back to top