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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007709 ID=TCONS_00007709|Name=TCONS_00007709|organism=Clytia hemisphaerica|type=transcript|length=574bp
ATTACACAACTTTAGAAAAGGCCTATAAATTGGAACAAGTTGAAACAATG
AGACATCACTCATTAGATTTTAAGCATCACCAAAAGAAGATTCAAAATGA
AGCTCCTTTTTGCAGCACTCCTTGTGTTCACCATTTCAATGGTTACCTCA
GCTGATGatttttGCAAGGACAACAACGTGTGGTGTAAATACATGGCTAG
ATATGGTGCATGCTCGTGGAACGTACAAACCATCGAAACATGCCCCAGAA
CTTGCGGAAAGTGCTCAGTTCATTGTGTTATCAGCAATGGTGCAGTCCGT
AAAGAATGCGGATATGTTGGTATTGGTCGTGATGAATGCTTCACCAAAGG
ATGTTGTTGGGTTCCTCTACCAAGTGGTCAAAATGGTGCATGGTGTTATG
AATCTCCAAGTAACAAGCTTCAATAAAGGATATGCATGTTTTGAAAGTAC
AGTAGCtatatttatttaatttgattGTTGATAATTAATTTAATGTGATT
TGataattaatttaatttgatgacttaaacaaaatttacaaagatAAAAC
GTCTCCCAAGTAGCTTTCTTTCCG Run BLAST on NCBI transcript from alignment at sc0000079:226945..231927+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007709 ID=TCONS_00007709|Name=TCONS_00007709|organism=Clytia hemisphaerica|type=transcript|length=4983bp|location=Sequence derived from alignment at sc0000079:226945..231927+ (Clytia hemisphaerica)
ATTACACAACTTTAGAAAAGGCCTATAAATTGGAACAAGTTGAAACAATG
AGACATCACTCATTAGATTTTAAGCATCACCAAAAGAAGATTCAAAATGA
AGCTCCTTTTTGCAGCACTCCTTGTGTTCACCATTTCAATGGTTACCTCA
GCTGATGGTATGcacattcttttattttgagaataatctaatattttgat
atttttcaagtgtttAATACTACGCAGCTTTAATATGTATTTAAGCTCAA
AGAATACTTCACAGCtgccgggtgcgccacaaaaaagtttctctttttaa
aacttattttctcgaaatctaaaatttataaaagaacAGAATGAACccgg
taaagatttttttaaagtttttcacccggGCACACCCCAGTCATTAATTA
CACATTATGTGGGTCAACCCgagtttcagattttttgcgAGGAGCAACCA
GTATAAGTCAATTTCTCCTTTAATTTCTAATTcgtatttttgacataatc
aatTCAATGGCAAAGTTATCTATAATTTTTACCTGTGGTGCTTACTTGTT
TCCGATAGAAAAATCTCAATGTCTTTGCCCAATTGAGATTTTCACCCAGT
GAAATTTTNTAGATCGAATTGCATCTAACAAGATTATCTTCCCAAACCAC
CCCCATAAAGTTAAATAGCACTCACTGTAGTGGGgagggtttcatggttg
gcggaagggctgccttttttcgtcCGTAATTGCGAAATTTGAGTCTTTTT
TCGGATACGAAAAATTGGGCAATTTATGAATCGAAAAAAGGATAATTGaa
acaatagaccttatcggagtttttgtgatttttctaaaacagcaaTGCAT
TATGGGATTGTtttgggagtattacaatagaaatttcttaggaattcctc
gagggaattctattgtaatactatCCCAAAACAATCCCAAAATGCATTGC
tgctttagaaaaatcaaaaactccgataaggtctattatttCAATCGTCC
GGAATTAGGAATTTTCGTTGGCGGAATTCGGTAGTCATTTTGATGGTTTA
ACGAGAATGTGAGAAAGATTGACGGTATAGTGGAATCGGGTGTCTCACTA
CCCCCTGTTAATTTCAGAAATCTAATCTCAATTCACACACATCTTTATTT
GACCTATTTTAATGATCTTGACAAAACTGGTTAATATTTAGGTAGCTTTA
TatcatttttgaatttgatgAGATTTCCTGCTAATATCTATTTACAAAAT
ATCCTATTCATATCATTAGAATAGTCATATTACACAACTTTAGAAAAGGC
CTATAAATTGGAACAAGTTGAAACAATGAGACATCACTCAATAGATTTTA
AGCATCACCAAAAGAAGATTCAAAATGAAGCTCCTTTTTGCAGCACTCCT
TGTGTTCACCATTTCAATGGTTACCTCAGCTGATGGTATGcacattcttt
tattttgagaataatctaatattttgatatttttcaagtgtttAATACTA
CGCAGCTTTATTATGTATTTAAGCTCAAAGAATACTTCACAGCtgccggg
tgcgccacaaaaaagtttctctttttaaaacttattttctcgaaatctaa
aatttataaaagaacAGAATGAACccggtaaagatttttttaaagttttt
cacccggGCACACCCCGGTCATTAATTACACATTATGTGGGTCAACCCga
gtttcagattttttgcgAGGAGCAACCAGTATAAGTCAATTTCTCCTTTA
ATTTCTAATTcgtatttttgacataatcaatTCAATGGCAAAGTTATCTA
TAATTTTTACCTGTGGTGCTTACTTGTTTCCGATAGAAAAATCTCAATGT
CTTTGCCCAATTGAAATTTTCACCCAGTGAAATTTTCAGACTCGAAATTG
GTTTTAAAATACCaacgggtcactgagacaggggcaTTTCCCTCTTGGTC
AAGATTAGGTATTGAATTATTCATACTAATCCGTCGTAAGACAAAAAGTG
TATCAAACCCAATATTATTTCAGCTAGCTGATCAGCCGAAATCCTAGTGG
ATTTATATTTTAAAGTCTTCTTtatcttcaaaatatttcagatttttGCA
AGGACAACAACGTGTGGTGTAAATACATGGCTAGATATGGTGCATGCTCG
TGGAACGTACAAACCATCGAAACATGCCCCAGAACTTGCGGAAAGTGCTC
AGGTATAAAGCAATTATCAAATTTCAGATGAAACTAACACACATCGTTGT
TTCCATTTAACGTtaatgaatgttgaaacaacgttgctgTGAGTCAGCTG
AAGTCATTTCTCTTGATCTCCCCAGCCCAGTCTGGACTTTTCGATTAGTA
TGGCGGATTTAAGCCAATCTATTTTAAATATTCTCTTTTTCTtatcgaaa
aattgatttttattttcttatctacgaaacgaaaataaattaatttattt
cctAATTCTTCTAAAATCTTGTCAAAGAcccaatgaaaattgaaaacacg
ATGAAACAACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
ACCCGAAAACGTATACAACTTGAAAACGCATACAACCTGAAAACGTATGT
AACCCAAAAACGCATACAACCTGAAAACGCATACAACCTGAAAACGCATC
CCAACTGAAAATGCATCCCACCTAAAAACGCATCCCAACTAAAAACGCAC
CCCACCTAAAAACGTATACAACTTGAAAACGCATACAACCCGAAACCGTA
TGTAGCCTGAAAACTTATACAGCCCGAAAACGTATACAACCTGAAAACGT
ATGTGACCCGAAAACGTATGTAACCCGAAAACGTATACAACCTGAAAACG
TATACAACTTGAAAACGTATACGAAAACGTATACAACTTGAAAACGTATA
CAACTTGAAAACGTAAGCAATTTGAAAACGTAAGCATTGAAAACGTATGC
AATTTGAAATGTTTGCAACCTGAAAATGTATGAAATTAATCGATAATCGA
ATTCTTTAATCTAATTAAGCAATTATATGCTAAAATACCtaaaatccaaa
attgaaaatcatattcgtttaaaaacaatataacgtatcataaaatattt
tgcctTTAGCGTAAATTCTAATTCTCCAAAAACAAAAAGGAGGAAGAGAA
GTTTCGAGAATACGACTTGTAACAGGTTTGAACGACGTGTGGTGCAAATA
AcaaaatctaccatttttatgaACACGTGAAACTCTCAAAAACTCTAATT
TACAGAACggtaatagtaataataatatTAAACGCCCCTTGATTTTCTAC
GAAAACGTAAATAAATACACGTAGTTGAACTACTTCATTTGGTATGTGCG
ACCCAACGCATATTCCAACCTGCCTCGAATAGGTGTCTTCAATAAGGTAG
ACTGGTAAACCATGTCTTTGAACTTCGTTGCAGCTCACGCTTGCAATGGG
CTCGCTACGTTCGCTGAAtaccactctcccgcggcaatttctatttttta
taagaactctttatttcCGCGTTCTTGTGACCAATGAAAggcagacgctt
gctagtctatgAATAAGGTGTTTTTTGACGCCCTAATATCTGATTCTTAC
ATCCAAAGATACTATTCTATTCTTTTTACCATAAACCTTCAGTTCATTGT
GTTATCAGCAATGGTGCAGTCCGTAAAGAATGCGGATATGTTGGTATTGG
TCGTGATGAATGCTTCACCAAAGGATGTTGTTGGGTTCCTCTACCAAGTG
GTCAAAATGGTGCATGGTGTTATGAATCTCCAAGTAGGTTAACTAATGAT
AGTTGGTTTatattatttttgacagatAATGTGTTGCTATATGGGGCTTT
TAAATTGAATATAGTGGGTGGAGGATAAAACGTTTTGTGAATCTTACCCA
AGTatcagttgaccccccccccccccccaaattcccccccccccccccct
ggaaattcaCCCCTAaactagatttttcactacccgcGGACAAAATATCA
AGATTTGTACAAAGATTTTATGGAAGAGCCGATGTTCCCATACTCCTGTA
GGCTGTGCACATCCCTGAAAGAGGATGCAAATCACACTCGAAAACGCTTG
TTTTTTTGTATGCGTGCTTACAGATGCCTAATAAACTTCCCCAGCTTGtc
catttttagatttttccaaCACCCCGGACTTTATTAAGATCCCCCGCCcc
cttttatcaatttttgaaaatatcttcagCTGTCAGAAGAAGAACccatc
tttttattttaatttcagGTAACAAGCTTCAATAAAGGATATGCATGTTT
TGAAAGTACAGTAGCtatatttatttaatttgattGTTGATAATTAATTT
AATGTGATTTGataattaatttaatttgatgacttaaacaaaatttacaa
agatAAAACGTCTCCCAAGTAGCTTTCTTTCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007709-exon-sc0000079-1491911889:226945..227101 | TCONS_00007709-exon-sc0000079-1491911889:226945..227101 | Clytia hemisphaerica | exon |
| TCONS_00007709-exon-sc0000079-1510915933:226945..227101 | TCONS_00007709-exon-sc0000079-1510915933:226945..227101 | Clytia hemisphaerica | exon |
| TCONS_00007709-exon-sc0000079-1575043694:226945..227101 | TCONS_00007709-exon-sc0000079-1575043694:226945..227101 | Clytia hemisphaerica | exon |
| TCONS_00007709-exon-sc0000079-1491911889:229036..229146 | TCONS_00007709-exon-sc0000079-1491911889:229036..229146 | Clytia hemisphaerica | exon |
| TCONS_00007709-exon-sc0000079-1510915933:229036..229146 | TCONS_00007709-exon-sc0000079-1510915933:229036..229146 | Clytia hemisphaerica | exon |
| TCONS_00007709-exon-sc0000079-1575043694:229036..229146 | TCONS_00007709-exon-sc0000079-1575043694:229036..229146 | Clytia hemisphaerica | exon |
| TCONS_00007709-exon-sc0000079-1491911889:231137..231277 | TCONS_00007709-exon-sc0000079-1491911889:231137..231277 | Clytia hemisphaerica | exon |
| TCONS_00007709-exon-sc0000079-1510915933:231137..231277 | TCONS_00007709-exon-sc0000079-1510915933:231137..231277 | Clytia hemisphaerica | exon |
| TCONS_00007709-exon-sc0000079-1575043694:231137..231277 | TCONS_00007709-exon-sc0000079-1575043694:231137..231277 | Clytia hemisphaerica | exon |
| TCONS_00007709-exon-sc0000079-1491911889:231763..231927 | TCONS_00007709-exon-sc0000079-1491911889:231763..231927 | Clytia hemisphaerica | exon |
| TCONS_00007709-exon-sc0000079-1510915933:231763..231927 | TCONS_00007709-exon-sc0000079-1510915933:231763..231927 | Clytia hemisphaerica | exon |
| TCONS_00007709-exon-sc0000079-1575043694:231763..231927 | TCONS_00007709-exon-sc0000079-1575043694:231763..231927 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000079 | supercontig | sc0000079:226945..231927 + |
Blast
The following BLAST results are available for this feature:
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