XLOC_004370 (gene) - C. hemisphaerica

Overview
NameXLOC_004370
Unique NameXLOC_004370
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000079:226945..231927+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_004370 ID=XLOC_004370|Name=XLOC_004370|organism=Clytia hemisphaerica|type=gene|length=4983bp|location=Sequence derived from alignment at sc0000079:226945..231927+ (Clytia hemisphaerica)
ATTACACAACTTTAGAAAAGGCCTATAAATTGGAACAAGTTGAAACAATG
AGACATCACTCATTAGATTTTAAGCATCACCAAAAGAAGATTCAAAATGA
AGCTCCTTTTTGCAGCACTCCTTGTGTTCACCATTTCAATGGTTACCTCA
GCTGATGGTATGcacattcttttattttgagaataatctaatattttgat
atttttcaagtgtttAATACTACGCAGCTTTAATATGTATTTAAGCTCAA
AGAATACTTCACAGCtgccgggtgcgccacaaaaaagtttctctttttaa
aacttattttctcgaaatctaaaatttataaaagaacAGAATGAACccgg
taaagatttttttaaagtttttcacccggGCACACCCCAGTCATTAATTA
CACATTATGTGGGTCAACCCgagtttcagattttttgcgAGGAGCAACCA
GTATAAGTCAATTTCTCCTTTAATTTCTAATTcgtatttttgacataatc
aatTCAATGGCAAAGTTATCTATAATTTTTACCTGTGGTGCTTACTTGTT
TCCGATAGAAAAATCTCAATGTCTTTGCCCAATTGAGATTTTCACCCAGT
GAAATTTTNTAGATCGAATTGCATCTAACAAGATTATCTTCCCAAACCAC
CCCCATAAAGTTAAATAGCACTCACTGTAGTGGGgagggtttcatggttg
gcggaagggctgccttttttcgtcCGTAATTGCGAAATTTGAGTCTTTTT
TCGGATACGAAAAATTGGGCAATTTATGAATCGAAAAAAGGATAATTGaa
acaatagaccttatcggagtttttgtgatttttctaaaacagcaaTGCAT
TATGGGATTGTtttgggagtattacaatagaaatttcttaggaattcctc
gagggaattctattgtaatactatCCCAAAACAATCCCAAAATGCATTGC
tgctttagaaaaatcaaaaactccgataaggtctattatttCAATCGTCC
GGAATTAGGAATTTTCGTTGGCGGAATTCGGTAGTCATTTTGATGGTTTA
ACGAGAATGTGAGAAAGATTGACGGTATAGTGGAATCGGGTGTCTCACTA
CCCCCTGTTAATTTCAGAAATCTAATCTCAATTCACACACATCTTTATTT
GACCTATTTTAATGATCTTGACAAAACTGGTTAATATTTAGGTAGCTTTA
TatcatttttgaatttgatgAGATTTCCTGCTAATATCTATTTACAAAAT
ATCCTATTCATATCATTAGAATAGTCATATTACACAACTTTAGAAAAGGC
CTATAAATTGGAACAAGTTGAAACAATGAGACATCACTCAATAGATTTTA
AGCATCACCAAAAGAAGATTCAAAATGAAGCTCCTTTTTGCAGCACTCCT
TGTGTTCACCATTTCAATGGTTACCTCAGCTGATGGTATGcacattcttt
tattttgagaataatctaatattttgatatttttcaagtgtttAATACTA
CGCAGCTTTATTATGTATTTAAGCTCAAAGAATACTTCACAGCtgccggg
tgcgccacaaaaaagtttctctttttaaaacttattttctcgaaatctaa
aatttataaaagaacAGAATGAACccggtaaagatttttttaaagttttt
cacccggGCACACCCCGGTCATTAATTACACATTATGTGGGTCAACCCga
gtttcagattttttgcgAGGAGCAACCAGTATAAGTCAATTTCTCCTTTA
ATTTCTAATTcgtatttttgacataatcaatTCAATGGCAAAGTTATCTA
TAATTTTTACCTGTGGTGCTTACTTGTTTCCGATAGAAAAATCTCAATGT
CTTTGCCCAATTGAAATTTTCACCCAGTGAAATTTTCAGACTCGAAATTG
GTTTTAAAATACCaacgggtcactgagacaggggcaTTTCCCTCTTGGTC
AAGATTAGGTATTGAATTATTCATACTAATCCGTCGTAAGACAAAAAGTG
TATCAAACCCAATATTATTTCAGCTAGCTGATCAGCCGAAATCCTAGTGG
ATTTATATTTTAAAGTCTTCTTtatcttcaaaatatttcagatttttGCA
AGGACAACAACGTGTGGTGTAAATACATGGCTAGATATGGTGCATGCTCG
TGGAACGTACAAACCATCGAAACATGCCCCAGAACTTGCGGAAAGTGCTC
AGGTATAAAGCAATTATCAAATTTCAGATGAAACTAACACACATCGTTGT
TTCCATTTAACGTtaatgaatgttgaaacaacgttgctgTGAGTCAGCTG
AAGTCATTTCTCTTGATCTCCCCAGCCCAGTCTGGACTTTTCGATTAGTA
TGGCGGATTTAAGCCAATCTATTTTAAATATTCTCTTTTTCTtatcgaaa
aattgatttttattttcttatctacgaaacgaaaataaattaatttattt
cctAATTCTTCTAAAATCTTGTCAAAGAcccaatgaaaattgaaaacacg
ATGAAACAACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
ACCCGAAAACGTATACAACTTGAAAACGCATACAACCTGAAAACGTATGT
AACCCAAAAACGCATACAACCTGAAAACGCATACAACCTGAAAACGCATC
CCAACTGAAAATGCATCCCACCTAAAAACGCATCCCAACTAAAAACGCAC
CCCACCTAAAAACGTATACAACTTGAAAACGCATACAACCCGAAACCGTA
TGTAGCCTGAAAACTTATACAGCCCGAAAACGTATACAACCTGAAAACGT
ATGTGACCCGAAAACGTATGTAACCCGAAAACGTATACAACCTGAAAACG
TATACAACTTGAAAACGTATACGAAAACGTATACAACTTGAAAACGTATA
CAACTTGAAAACGTAAGCAATTTGAAAACGTAAGCATTGAAAACGTATGC
AATTTGAAATGTTTGCAACCTGAAAATGTATGAAATTAATCGATAATCGA
ATTCTTTAATCTAATTAAGCAATTATATGCTAAAATACCtaaaatccaaa
attgaaaatcatattcgtttaaaaacaatataacgtatcataaaatattt
tgcctTTAGCGTAAATTCTAATTCTCCAAAAACAAAAAGGAGGAAGAGAA
GTTTCGAGAATACGACTTGTAACAGGTTTGAACGACGTGTGGTGCAAATA
AcaaaatctaccatttttatgaACACGTGAAACTCTCAAAAACTCTAATT
TACAGAACggtaatagtaataataatatTAAACGCCCCTTGATTTTCTAC
GAAAACGTAAATAAATACACGTAGTTGAACTACTTCATTTGGTATGTGCG
ACCCAACGCATATTCCAACCTGCCTCGAATAGGTGTCTTCAATAAGGTAG
ACTGGTAAACCATGTCTTTGAACTTCGTTGCAGCTCACGCTTGCAATGGG
CTCGCTACGTTCGCTGAAtaccactctcccgcggcaatttctatttttta
taagaactctttatttcCGCGTTCTTGTGACCAATGAAAggcagacgctt
gctagtctatgAATAAGGTGTTTTTTGACGCCCTAATATCTGATTCTTAC
ATCCAAAGATACTATTCTATTCTTTTTACCATAAACCTTCAGTTCATTGT
GTTATCAGCAATGGTGCAGTCCGTAAAGAATGCGGATATGTTGGTATTGG
TCGTGATGAATGCTTCACCAAAGGATGTTGTTGGGTTCCTCTACCAAGTG
GTCAAAATGGTGCATGGTGTTATGAATCTCCAAGTAGGTTAACTAATGAT
AGTTGGTTTatattatttttgacagatAATGTGTTGCTATATGGGGCTTT
TAAATTGAATATAGTGGGTGGAGGATAAAACGTTTTGTGAATCTTACCCA
AGTatcagttgaccccccccccccccccaaattcccccccccccccccct
ggaaattcaCCCCTAaactagatttttcactacccgcGGACAAAATATCA
AGATTTGTACAAAGATTTTATGGAAGAGCCGATGTTCCCATACTCCTGTA
GGCTGTGCACATCCCTGAAAGAGGATGCAAATCACACTCGAAAACGCTTG
TTTTTTTGTATGCGTGCTTACAGATGCCTAATAAACTTCCCCAGCTTGtc
catttttagatttttccaaCACCCCGGACTTTATTAAGATCCCCCGCCcc
cttttatcaatttttgaaaatatcttcagCTGTCAGAAGAAGAACccatc
tttttattttaatttcagGTAACAAGCTTCAATAAAGGATATGCATGTTT
TGAAAGTACAGTAGCtatatttatttaatttgattGTTGATAATTAATTT
AATGTGATTTGataattaatttaatttgatgacttaaacaaaatttacaa
agatAAAACGTCTCCCAAGTAGCTTTCTTTCCG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00007709TCONS_00007709Clytia hemisphaericatranscript
TCONS_00007710TCONS_00007710Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00007710-proteinTCONS_00007710-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079supercontigsc0000079:226945..231927 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.19	0.13	0	0.22	0.87	0.62	0.5	0.23	0.08	0.51	0	0.19	0.34	0	0.11	0	8.2	7.85	0.83	0	34.58	32.73	20.17	21.78	55.41	53.93	0	0	0	0.22