TCONS_00007358 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007358
Unique NameTCONS_00007358
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2485

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007358 ID=TCONS_00007358|Name=TCONS_00007358|organism=Clytia hemisphaerica|type=transcript|length=2485bp
tttttaaattgttccaattttgataattttatatTAATTCCTGTAGCTAC
AATGATAAATGTTTTATAAATTTAGGAAACCTTCATTAATGGAAGGAATA
AAGTTGtaatcactttttgaaaaatgcttttctCATCATGCAATCAACTT
TCGTCTGATTtaacaaattagaaaaaataaaaataattttagaaaaaaga
gaataatagaaaattttaaacaaaaacaaaaaaccacaaattgcaaaaat
taatttgaCATCAGCAAACCTTTCAGGATCTATCACTATCAGTAACATTT
ACAATTTCAATTTactattatcaaaaacataacacATTTCGATcacaaaa
aatgccaaaaatgaaTTTAGAAATAATGCAAAGAATTtgaagtatttaga
aaaaggaAGATTATAATTGATCCTACAAGTCATTCATGGTttaaaaggta
aaaaataatataatggCTTATAGAAATCCTGAAATCTAACAACATCACAT
AACAGAACATTGTTGTGGCATCGGAGGAATTTGATTAGAATCTGAGATAC
CAGCCATCATATCAGCAGGTGGTTGACCAAATACCTGCATTTTCTGCATA
AGCTCCACAACTTTGGAAGTTCTTTCTTTCTTAGTTTGTTCAGTGTCAGT
ATCAGCCTCTTGCTCAAAGAGATCACACAACTGTACTACAATGTCATTCT
GGCttttatatttcaaataatcttcaggagttaatttttctttattttct
gaCAACCATGAAGGATATCTTTCTTTGATTTCACTCAGGGAAGGATACAA
TAAATCTTTTGTAAGTAAATTTTCCATCATCCCTTGCATCATGCCCATAA
AAGCATCACCCTCAGGAAAGATAGTATCACCCTCAGCTCCACCTTGACCT
TGTTGTGTTTCCATACTAGCTTGCATTTCTTTCATCATTTCACTAAAATC
ACCACCAAAGTCTGCACCAAAATCCTGGCCCTCCATGTTCAGATCATTAA
AATTATTGGTTAAATCTTTCAATGCGTTTTTCATATGTTCGTCAAAATTA
GCACCTTCTGGTGCTGTACCAGGAAAGCCACCCATTGCACCACCCATCGG
AAATTGCTTTTGGAAGCTATCAAATTCCTCCATCAAGCCTGGATCTTCAC
TAGACATTTGCTGTAAAACTTCATTCCAACCTTCTGACATTTTTAGGAGA
GCATCATCATCCAGAAAATTACCAAGATCAGAGCCCTGATCATGCTGttc
agtttttttctcaaccttTTTAGGCTTTGGTGGCGGTTTAACAAAATCAC
TTAATGCATCATCTAGCAGTGCATCCaattcatcatcatcaacaaCTTCT
TTTGGTGGACAATCATTGTTTTCTTGCTTCAGATTATCCCCTTTATCATC
AGCCATGTTTGAGTGAACTATCTTTTCTAGGCCAagtaaattataaaaat
aatgaactttaaaagtaaaatgacaaaaaagaaagttagTATAGTGACCC
CCCCATGTCCACTTTTACGCAAATCGAccgaggtctgttagcacaaagat
acttcagatggtgattaaagcatgaaattcggcacagatgatcctcagag
ggtctaaaacttaattctaaacagtaacaccaaattttgccacctggcca
cctgccagatggaCCATTTTGTCCATTTGCATTCGgtcaaaagaaaactt
ttttcacctGAAAAATATCAGCTAGTGGAAATACCTCCACTtaaagcatg
ttcaaagttcacaataacgacTTATTAGAACAAGTTATTAAGACTAAAAG
TCAGCACTCCGTGGTTGAGACCAATGACGTTTATACCGtgagaaagggta
acttgcatcagtggaggctaacacgCATCGCCCTCAGATTAAAGacttgt
ctggtcattaaagtttgatttgagttaatgaacggcgtattaaaaaatac
acaatttctcttttgcaatgtctgtgcactctactaagaggaacgaagaa
atgattgataaacttggtggagttatcaaaacaaatttgttgtcaaaaag
atttaacagtaagtgaaaatacagagaccagatatcaaccagtcccatgt
tacgaccaatcgtcccaagttagagcagttgacggtaccaattctaaaaa
aaatccaatcaaagatggcagttATAGAAAAAACGTTGGTATGAGGGAGT
CTCCCGCCCAATCCAATGCAGGAGAGTTATGGtttggatctttcggattc
tacttgttctcttttctagaatttttctTGTACACAGTAtgggaaatagg
tcaaggcagatatctagcaaaagaaattctccagaggtttaTTATTGTAT
GAATTTTCTGGGCTCAAAGACGTTTGGTCGCCAACAGtaacagtcaggaa
cagtcgccttattaggagacgcctcctgattaggagacccgtctcctaat
caggaggttcacgtctcctaatcaggagacgggtG
Run BLAST on NCBI

protein sequence of TCONS_00007358-protein

>TCONS_00007358-protein ID=TCONS_00007358-protein|Name=TCONS_00007358-protein|organism=Clytia hemisphaerica|type=polypeptide|length=303bp
MADDKGDNLKQENNDCPPKEVVDDDELDALLDDALSDFVKPPPKPKKVEK
KTEQHDQGSDLGNFLDDDALLKMSEGWNEVLQQMSSEDPGLMEEFDSFQK
QFPMGGAMGGFPGTAPEGANFDEHMKNALKDLTNNFNDLNMEGQDFGADF
GGDFSEMMKEMQASMETQQGQGGAEGDTIFPEGDAFMGMMQGMMENLLTK
DLLYPSLSEIKERYPSWLSENKEKLTPEDYLKYKSQNDIVVQLCDLFEQE
ADTDTEQTKKERTSKVVELMQKMQVFGQPPADMMAGISDSNQIPPMPQQC
SVM
Run BLAST on NCBI

transcript from alignment at sc0000075:629330..631814

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007358 ID=TCONS_00007358|Name=TCONS_00007358|organism=Clytia hemisphaerica|type=transcript|length=2485bp|location=Sequence derived from alignment at sc0000075:629330..631814 (Clytia hemisphaerica)
Cacccgtctcctgattaggagacgtgaacctcctgattaggagacgggtc
tcctaatcaggaggcgtctcctaataaggcgactgttcctgactgttaCT
GTTGGCGACCAAACGTCTTTGAGCCCAGAAAATTCATACAATAAtaaacc
tctggagaatttcttttgctagatatctgccttgacctatttcccaTACT
GTGTACAagaaaaattctagaaaagagaacaagtagaatccgaaagatcc
aaaCCATAACTCTCCTGCATTGGATTGGGCGGGAGACTCCCTCATACCAA
CGTTTTTTCTATaactgccatctttgattggattttttttagaattggta
ccgtcaactgctctaacttgggacgattggtcgtaacatgggactggttg
atatctggtctctgtattttcacttactgttaaatctttttgacaacaaa
tttgttttgataactccaccaagtttatcaatcatttcttcgttcctctt
agtagagtgcacagacattgcaaaagagaaattgtgtattttttaatacg
ccgttcattaactcaaatcaaactttaatgaccagacaagtCTTTAATCT
GAGGGCGATGcgtgttagcctccactgatgcaagttaccctttctcaCGG
TATAAACGTCATTGGTCTCAACCACGGAGTGCTGACTTTTAGTCTTAATA
ACTTGTTCTAATAAgtcgttattgtgaactttgaacatgctttaAGTGGA
GGTATTTCCACTAGCTGATATTTTTCaggtgaaaaaagttttcttttgac
CGAATGCAAATGGACAAAATGGtccatctggcaggtggccaggtggcaaa
atttggtgttactgtttagaattaagttttagaccctctgaggatcatct
gtgccgaatttcatgctttaatcaccatctgaagtatctttgtgctaaca
gacctcggTCGATTTGCGTAAAAGTGGACATGGGGGGGTCACTATActaa
ctttcttttttgtcattttacttttaaagttcattatttttataatttac
tTGGCCTAGAAAAGATAGTTCACTCAAACATGGCTGATGATAAAGGGGAT
AATCTGAAGCAAGAAAACAATGATTGTCCACCAAAAGAAGttgttgatga
tgatgaattGGATGCACTGCTAGATGATGCATTAAGTGATTTTGTTAAAC
CGCCACCAAAGCCTAAAaaggttgagaaaaaaactgaaCAGCATGATCAG
GGCTCTGATCTTGGTAATTTTCTGGATGATGATGCTCTCCTAAAAATGTC
AGAAGGTTGGAATGAAGTTTTACAGCAAATGTCTAGTGAAGATCCAGGCT
TGATGGAGGAATTTGATAGCTTCCAAAAGCAATTTCCGATGGGTGGTGCA
ATGGGTGGCTTTCCTGGTACAGCACCAGAAGGTGCTAATTTTGACGAACA
TATGAAAAACGCATTGAAAGATTTAACCAATAATTTTAATGATCTGAACA
TGGAGGGCCAGGATTTTGGTGCAGACTTTGGTGGTGATTTTAGTGAAATG
ATGAAAGAAATGCAAGCTAGTATGGAAACACAACAAGGTCAAGGTGGAGC
TGAGGGTGATACTATCTTTCCTGAGGGTGATGCTTTTATGGGCATGATGC
AAGGGATGATGGAAAATTTACTTACAAAAGATTTATTGTATCCTTCCCTG
AGTGAAATCAAAGAAAGATATCCTTCATGGTTGtcagaaaataaagaaaa
attaactcctgaagattatttgaaatataaaaGCCAGAATGACATTGTAG
TACAGTTGTGTGATCTCTTTGAGCAAGAGGCTGATACTGACACTGAACAA
ACTAAGAAAGAAAGAACTTCCAAAGTTGTGGAGCTTATGCAGAAAATGCA
GGTATTTGGTCAACCACCTGCTGATATGATGGCTGGTATCTCAGATTCTA
ATCAAATTCCTCCGATGCCACAACAATGTTCTGTTATGTGATGTTGTTAG
ATTTCAGGATTTCTATAAGccattatattattttttaccttttaaACCAT
GAATGACTTGTAGGATCAATTATAATCTtcctttttctaaatacttcaAA
TTCTTTGCATTATTTCTAAAttcatttttggcattttttgtgATCGAAAT
gtgttatgtttttgataatagtAAATTGAAATTGTAAATGTTACTGATAG
TGATAGATCCTGAAAGGTTTGCTGATGtcaaattaatttttgcaatttgt
ggttttttgtttttgtttaaaattttctattattctcttttttctaaaat
tatttttattttttctaatttgttaAATCAGACGAAAGTTGATTGCATGA
TGagaaaagcatttttcaaaaagtgattaCAACTTTATTCCTTCCATTAA
TGAAGGTTTCCTAAATTTATAAAACATTTATCATTGTAGCTACAGGAATT
Aatataaaattatcaaaattggaacaatttaaaaa

Coding sequence (CDS) from alignment at sc0000075:629330..631814

>TCONS_00007358 ID=TCONS_00007358|Name=TCONS_00007358|organism=Clytia hemisphaerica|type=CDS|length=912bp|location=Sequence derived from alignment at sc0000075:629330..631814 (Clytia hemisphaerica)
ATGGCTGATGATAAAGGGGATAATCTGAAGCAAGAAAACAATGATTGTCC
ACCAAAAGAAGttgttgatgatgatgaattGGATGCACTGCTAGATGATG
CATTAAGTGATTTTGTTAAACCGCCACCAAAGCCTAAAaaggttgagaaa
aaaactgaaCAGCATGATCAGGGCTCTGATCTTGGTAATTTTCTGGATGA
TGATGCTCTCCTAAAAATGTCAGAAGGTTGGAATGAAGTTTTACAGCAAA
TGTCTAGTGAAGATCCAGGCTTGATGGAGGAATTTGATAGCTTCCAAAAG
CAATTTCCGATGGGTGGTGCAATGGGTGGCTTTCCTGGTACAGCACCAGA
AGGTGCTAATTTTGACGAACATATGAAAAACGCATTGAAAGATTTAACCA
ATAATTTTAATGATCTGAACATGGAGGGCCAGGATTTTGGTGCAGACTTT
GGTGGTGATTTTAGTGAAATGATGAAAGAAATGCAAGCTAGTATGGAAAC
ACAACAAGGTCAAGGTGGAGCTGAGGGTGATACTATCTTTCCTGAGGGTG
ATGCTTTTATGGGCATGATGCAAGGGATGATGGAAAATTTACTTACAAAA
GATTTATTGTATCCTTCCCTGAGTGAAATCAAAGAAAGATATCCTTCATG
GTTGtcagaaaataaagaaaaattaactcctgaagattatttgaaatata
aaaGCCAGAATGACATTGTAGTACAGTTGTGTGATCTCTTTGAGCAAGAG
GCTGATACTGACACTGAACAAACTAAGAAAGAAAGAACTTCCAAAGTTGT
GGAGCTTATGCAGAAAATGCAGGTATTTGGTCAACCACCTGCTGATATGA
TGGCTGGTATCTCAGATTCTAATCAAATTCCTCCGATGCCACAACAATGT
TCTGTTATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004137XLOC_004137Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007358-proteinTCONS_00007358-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007358-exon-sc0000075-1491911889:629330..631814TCONS_00007358-exon-sc0000075-1491911889:629330..631814Clytia hemisphaericaexon
TCONS_00007358-exon-sc0000075-1510915933:629330..631814TCONS_00007358-exon-sc0000075-1510915933:629330..631814Clytia hemisphaericaexon
TCONS_00007358-exon-sc0000075-1575043694:629330..631814TCONS_00007358-exon-sc0000075-1575043694:629330..631814Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075supercontigsc0000075:629330..631814 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.1193	25.2559	10.1528	7.57037	13.0018	10.3947	9.65233	9.99607	9.09361	8.60697	7.04391	5.7099	7.0703	6.59769	8.14161	8.03309	10.9463	7.77261	5.84389	7.90792	11.5383	11.2012	28.3597	25.3494	22.4596	16.6185	12.1894	8.99146	22.5563	22.5093
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006708Pex19
Vocabulary: Cellular Component
TermDefinition
GO:0005777peroxisome
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005777 peroxisome
Blast
[Close]
BLAST of TCONS_00007358 vs. Swiss-Prot (Human)
Match: PEX19 (Peroxisomal biogenesis factor 19 OS=Homo sapiens GN=PEX19 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.414e-26
Identity = 70/219 (31.96%), Postives = 115/219 (52.51%), Query Frame = -3 
Query:  522 WNEVLQQMSSEDPGLMEEFDSFQKQXXXXXXXXXXXXXAPEGANFDEHMKNALKDLTNNFNDLNMEGQXXXXXXXXXFSEMMKEMQASMETQQGQGGAEGDTIFPEGDAFMGMMQGMMENLLTKDLLYPSLSEIKERYPSWLSENKEKLTPEDYLKYKSQNDIVVQLCDLFEQEADTDTEQTKKERTSKVVELMQKMQVFGQPPADMMAGISDSNQIPP 1178
            + + +++++ E+P L+E+F    +     G+             F   +K  L  L  N  DL         +      E+ K M+       G G  EGD    EG+  + +MQ +M+NLL+KD+LYPSL EI E+YP WL  ++E L PE + KY+ Q+ ++ ++C+ FE E  TD+E T+K R   V++LMQ++Q  G PP ++      + ++PP
Sbjct:   87 FEKAMKELAEEEPHLVEQFQKLSEAAGRVGSDMTSQQ------EFTSCLKETLSGLAKNATDLQ--------NSSMSEEELTKAME-------GLGMDEGDG---EGN-ILPIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDSETTQKARFEMVLDLMQQLQDLGHPPKEL------AGEMPP 274
The following BLAST results are available for this feature:
BLAST of TCONS_00007358 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PEX191.414e-2631.96Peroxisomal biogenesis factor 19 OS=Homo sapiens G... [more]
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