TCONS_00073618 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073618
Unique NameTCONS_00073618
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1613

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073618 ID=TCONS_00073618|Name=TCONS_00073618|organism=Clytia hemisphaerica|type=transcript|length=1613bp
NNGATGCTATCTTAATGGGTGGAgctaaaatcactaaaaaagGAGCACCA
AATTCACCAAAAGGGCAACAAAATTACTACAATACACAAGGAGCCAGTCA
CATGCCACCGCAACAACAACAAATGCCACCACACCGAAAGAGAAGTAGTT
CCAATCATCTCCAAGTGAGAAGAGAAGAAGAAGAGGAGGATGTTGAAGTT
TTCGACTCGTTTTTGGACACCAAAATGAACGGTAGTTACGTTATCGCTGG
TGATTTTAATGGAACTTGTTTTAGTGATCCAGACTTGTGTAAGTTGAACG
GGATGACCATATACACTTGGTTGAAGATTGATGCAAAAGAATTGGAGAGT
ACACAAAATGCTTTAGGACGAGATGCTTACATATTGAGCACTGGTGGACA
ATCTAAGAAATCACGAGGTTTCGCTTTCCTATGGTTTCACGGTAAATTTG
TCATGGTTATCAGTACCGaaacaaaacaatggaaattaGAAATACCgaaa
gataaaataaaacacGATGAGTGGGTCCagctttcttttgtttggaataC
AGACACGTTAACTGGTTATCAAGATGGAACCAAAATAGGTAGTACCAAGG
GCGTGGCCGCTGAACGTCCGGAAGTCCAGTTCACTATTATGACTATCGGA
CGTCCGAATAATGCAGTCGATGCACGCTTCATGATGAAAATGGAAATGGC
TTATTTGACGTTATGGGATAAAGCATTGGAAGAAAAAGAACTCGATAAAT
CATATGAAAATAtaAAACAAAAGATCGATAAGACGAGGAGACGTagtatt
ttagaaaaacattctACCATAAAACAGCACGCATTGGTGAACAGGGAAAT
GCAAAACTAAACAGGTGAATTAACTTGTCAGAGATACTGAATCACCATAC
AAGAAGCTCTCCGAGAAACATGTTATAAAATAAGACGACGGTGTGATTGA
TGTAGAAACTTAAGAACTTTTGCGTCTTCGTGTGTAAAATACAGACCAAT
TCGCTTCGTATGCAAATGACTCTACGAGGAAAATCTCGATAGGCTTGACG
TATGGCTGTCATATCATTCGAACTAAATAAAGTGTTATGGAAATTTTGTA
ACAAAAATCATTGATAATCAACCGTCAGTTTGAAACTCCTGTAATGTTTT
ACTACTGACCAAAATAATAATCCTTTCCCAAGAATTTATTTTGGTGGgct
aaaaatttgatttgatttgatttgattaagGAGCTCCCGTTTTAGAATTA
CGAGAAAATGTTACAGAGCGTTACCTGACCTCTACTACAATCAGTgcaat
aatatattggcaccaGCCTCAAAAAAAACACTGGATTTACTCACTTCCCT
AGCTCCTAAATCCCCTCCCCCCTAATTTCAATGGTTGAAGAAGGCAACAG
GGCAGCAGACTCAACCATCAAAGCTTAGAGGGAGGGAAAATAAGTTTTAA
CATAAATTATATTATTGCAGTGATTGTAGCTGAAAagacttttttgcttt
tttgaaatcttgaattATTTCTAGTAAttataattatattttttaaatgc
ttgtaaataaattaaaagaaaattaaaggaTTTAAAAGATTTCATGTTGA
ATCAGTTTAATGA
Run BLAST on NCBI

transcript from alignment at scaffold_96:111147..117565+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073618 ID=TCONS_00073618|Name=TCONS_00073618|organism=Clytia hemisphaerica|type=transcript|length=6419bp|location=Sequence derived from alignment at scaffold_96:111147..117565+ (Clytia hemisphaerica)
NNGATGCTATCTTAATGGGTGGAgctaaaatcactaaaaaaggtTAGTAG
TTATAAATCTAGTACAAACCTTATTCCCATAGCGAATCTTCGTATTTTCC
GCCGGATGGTGTTGGACCCACAGATTTTTAATGCCCGAAGGgatagatgt
cgtgctttaagccatcgcaggcaaaaaaaaagaaaatatcgcaagaaata
tagtttctattgtttttgaaaatccgcgaagcttctgattggttaagcgc
tgaaattctataaTAATGTCATATTACCTAttacctaggtaggatttcct
acctaaccgcggcacacttttcagcaaaagcacgacatataacccttcgg
gctttacaaatcTGTGGGACccaatgaaaacaatcaaaggGTTGTCTAAA
GGTCCCATATTATACCCTTCAATGCATGTGAAATACAAATAAATACACAA
GGGCCTCCTCTTCTACACTCTTCAACCACTTAAACACTCCTGCGTCAAAG
ACCCGGCCCCGACCCCGGCCCCCGCCCCACTTGTAAATTCACCCAAGATT
TCGTCtttggtggaaaaaaatatcctacaatttcagacccaatggTAATT
TGACGTTGATTTCATCCTCACTTGAAATTTAATGTAAATATTGCACTTCA
AAAGATCCCATTAGGGATTCTTTagctgggaacaatagaatttcgatAAA
AATACTGAAGAAAAATCACCTTAAGACAATCCAAAAGAGAATATCCTTCA
AGAATCCAAAACTCTTTATaacaatatcatcttttttccATCAAAGGAGC
ACCAAATTCACCAAAAGGGCAACAAAATTACTACAATACACAAGGAGCCA
GTCACATGCCACCGCAACAACAACAAATGCCACCACACCGAAAGAGAAGT
AGTTCCAATCATCTCCAAGTGAGAAGAGAAGAAGAAGAGGAGGATGTTGA
AGTTTTCGACTCGTTTTTGGACACCAAAATGAACGGTAGTTACGTTATCG
CTGGTGATTTTAATGGTAAGAAACAAACACCATTTATCATGATATTAGAC
Accgtaccagtggataccccttaaaaccacataccccttaaaacccacaa
tgttgcatttttggctttcataactaccagatttaattttatgtggtaTG
TTTCACTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNttttctacaaaacatcactgc
tagggaagacaatcatagacaacgtactttcaacacaaaaagtttcagcc
ttacactccaactaaacaatgagatagagggttccactttttattgtggg
ttttaaggggtatccactggtacttAAGAATTCATAAAAATGAAAGCGAG
TTCGGAAAAAGACTTGATACCAGTAGCGTGGCGGCTCGACAAAATTTTAA
GCAAACTGAGAAGGcaattttagaaatttgggaTCTTGCCGTCTCCTATT
AAACGTAAAATATCCAGAATAAGACCAGAATAGGATTCCAGGCTAATTTT
AATAATCTTTTTCAAAGTATGCCCATCATGTGTCACCTATAAAACAAAGT
AAACATTTTTTGGTACGTTTTCCTCGACAGGAACTTGTTTTAGTGATCCA
GACTTGTGTAAGTTGAACGGGATGACCATATACACTTGGTTGAAGATTGA
TGCAAAAGAATTGGAGAGTACACAAAATGCTTTAGGACGAGATGCTTACA
TATTGAGCACTGGTGGACAATCTAAGAAATCACGAGGTTGGTTTACATTC
AAATATTGCAcgtaaggcgaaaataaaaaaatatagtgtttccggaatgc
agGTAAAGGAAAAAGGCTCTCACGCGGCcggccgaaaaattttttttttg
ctatttttgataacttaagatcattgaaatagagctttaaaaataacttt
tatttacaaacagtatgaagtaagccctggaATACTAATGCATCAACTaa
taacgaacaaaacttgatttacaagcgagaatatctaaccaaacaaCGTT
TGATAGCTTGGACGGTCAACTTGATTTCNCGCTGGTGATTTTAATGGTAA
GAAACAAACACCATTTATCATGATATTAGACTTAGAATTCATAAAAATGA
AAGCGAGTTCGGAAAAAGACTTGATACCAGTCGAGCGTGGCGGCTCGACC
AAAATTTAAGCAAACTGGGAAGACAATTTTAGGATTTTGGGATCTTTCCG
TCCCCTATTAAACGTAAGATATCCAGAATATGACCAGAATAGGATTCCAA
GCTAATTTTAATAATCTTCTTCAAAGTATTTTGGTACGTTTTCCTCGACA
GGAACTTGTTTTAGTGATCCAGACTTGTGTAAGTTGAACGGGATGACCAT
ATACACTTGGTTGAAGATTGATGCAAAAGAATTGGAGAGTACAGAAAATG
CTTTAGGACGAGATGCTTACATATTGAGCACTGGTGGACAATCTAAGAAA
TCGCGAGGTTGGTTTACATTCAAATATTGCAcgtaaggcgaaaataaaaa
aatatagtgtttccggaatgcaggtgaaggaaaaaagctatttttgataa
cttaagatcattgaaatagaactttaaagataacatttatttacaaacag
tatgaagtaagccctgaatactaatgcaTCAACTaataacgaacaaaact
tgatttacaagcgagaatatctaaccaaacgacgtttgatagctttaacg
gtcaacttgattttctttttttcacccggccgctttccggaaacactaca
tttttttattttcgccttacgGATAATTAATTTGGATTGATTTTGTATCA
CGTGATCAGAAGTAATTAGGATAATTCGAAGTTCATTCGGACAACCTAGA
GTTAGATATTTCTCGCCTTGTGCACAATCTCGGTTCGAGCTTGAGAATTC
CTACGAGCTCTACAATTTAATTTACACAATTTTTCTATTTCAGGTTTCGC
TTTCCTATGGTTTCACGGTAAATTTGTCATGGTTATCAGTACCGaaacaa
aacaatggaaattaGAAATACCgaaagataaaataaaacacGATGAGTGG
GTCCagctttcttttgtttggaataCAGACACGTTAACTGGTTATCAAGA
TGGAACCAAAATAGGTAGTACCAAGGGCGTGGCCGCTGAACGTCCGGAAG
TCCAGTTCACTATTATGACTATCGGACGTCCGAATAATGCAGTCGATGCA
CGCTTCATGATGAAAATGGAAATGGCTTATTTGACGTTATGGGATAAAGC
ATTGGAAGAAAAAGAACTCGATAAATCATATGAAAATAGTAAGTATTATT
TGTACTCATTGCGTAGCACAACCCTGTAGTGCTAATGTGCCTAGAAAAAT
GTTAACTCTGATCATTTACTGATTAAACCAGAAAGTTTTTACCTTGATTT
AATAACTTCAAACTTATGGTAAAATGaataattttatggattttaaactg
aataaaaatgttcCACTTTAACAGGGTCGATAGTGAATGAAGAATTTTAG
aatttaggcaaaaataaaaaaatgcagtgtttccggaatgcggctGAAGG
AAAAAGGCTCTCATGCAGCCGGTCGGCAAAAGcttttttttgctaatttt
gataacttaagatcattgcaatagaactttaaagatgacttttatgtaca
aacaatATGAAATAAGCCCTGAATACAgctgtatcaactactaacgaaca
aaacttggtttacaagcgggaatatctaaccaaacaaCGTTTGATAGCTT
GGACGGTCAACTTGATTTCCTTTATGAAaaaccatatagatgaacccata
gtctgcggccgggtgagaaaatactttttgttcacccggccggtttccgg
aaacactatttttttattttagccctattttctatgttttataAGGGAAA
ATTGACTGAAATTACTAAATTagatttttaattacttttcaACAAATCAT
TGTTAACTTCGTTCACAGACCTGACATTcgataaaaaaaatctaaattcc
attttttattttttatagtaAAACAAAAGATCGATAAGACGAGGAGACGT
agtattttagaaaaacattctACCATAAAACAGCACGCATTGGTGAACAG
GGAAATGCAAAACTAAACAGGTGAATTAACTTGTCAGAGATACTGAATCA
CCATACAAGAAGCTCTCCGAGAAACATGTTATAAAATAAGACGACGGTGT
GATTGATGTAGAAACTTAAGAACTTTTGCGTCTTCGTGTGTAAAATACAG
ACCAATTCGCTTCGTATGCAAATGACTCTACGAGGAAAATCTCGATAGGC
TTGACGTATGGCTGTCATATCATTCGAACTAAATAAAGTGTTATGGAAAT
TTTGTAACAAAAATCATTGATAATCAACCGTCAGTTTGAAACTCCTGTAA
TGTTTTACTACTGACCAAAATAATAATCCTTTCCCAAGAATTTATTTTGG
TGGgctaaaaatttgatttgatttgatttgattaagGAGCTCCCGTTTTA
GAATTACGAGAAAATGTTACAGAGCGTTACCTGACCTCTACTACAATCAG
TgcaataatatattggcaccaGCCTCAAAAAAAACACTGGATTTACTCAC
TTCCCTAGCTCCTAAATCCCCTCCCCCCTAATTTCAATGGTTGAAGAAGG
CAACAGGGCAGCAGACTCAACCATCAAAGCTTAGAGGGAGGGAAAATAAG
TTTTAACATAAATTATATTATTGCAGTGATTGTAGCTGAAAagacttttt
tgcttttttgaaatcttgaattATTTCTAGTAAttataattatatttttt
aaatgcttgtaaataaattaaaagaaaattaaaggaTTTAAAAGATTTCA
TGTTGAATCAGTTTAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045717XLOC_045717Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073618-exon-scaffold_96-1491911889:111147..111188TCONS_00073618-exon-scaffold_96-1491911889:111147..111188Clytia hemisphaericaexon
TCONS_00073618-exon-scaffold_96-1510915933:111147..111188TCONS_00073618-exon-scaffold_96-1510915933:111147..111188Clytia hemisphaericaexon
TCONS_00073618-exon-scaffold_96-1575043694:111147..111188TCONS_00073618-exon-scaffold_96-1575043694:111147..111188Clytia hemisphaericaexon
TCONS_00073618-exon-scaffold_96-1491911889:111943..112161TCONS_00073618-exon-scaffold_96-1491911889:111943..112161Clytia hemisphaericaexon
TCONS_00073618-exon-scaffold_96-1510915933:111943..112161TCONS_00073618-exon-scaffold_96-1510915933:111943..112161Clytia hemisphaericaexon
TCONS_00073618-exon-scaffold_96-1575043694:111943..112161TCONS_00073618-exon-scaffold_96-1575043694:111943..112161Clytia hemisphaericaexon
TCONS_00073618-exon-scaffold_96-1491911889:114277..114432TCONS_00073618-exon-scaffold_96-1491911889:114277..114432Clytia hemisphaericaexon
TCONS_00073618-exon-scaffold_96-1510915933:114277..114432TCONS_00073618-exon-scaffold_96-1510915933:114277..114432Clytia hemisphaericaexon
TCONS_00073618-exon-scaffold_96-1575043694:114277..114432TCONS_00073618-exon-scaffold_96-1575043694:114277..114432Clytia hemisphaericaexon
TCONS_00073618-exon-scaffold_96-1491911889:115640..115984TCONS_00073618-exon-scaffold_96-1491911889:115640..115984Clytia hemisphaericaexon
TCONS_00073618-exon-scaffold_96-1510915933:115640..115984TCONS_00073618-exon-scaffold_96-1510915933:115640..115984Clytia hemisphaericaexon
TCONS_00073618-exon-scaffold_96-1575043694:115640..115984TCONS_00073618-exon-scaffold_96-1575043694:115640..115984Clytia hemisphaericaexon
TCONS_00073618-exon-scaffold_96-1491911889:116715..117565TCONS_00073618-exon-scaffold_96-1491911889:116715..117565Clytia hemisphaericaexon
TCONS_00073618-exon-scaffold_96-1510915933:116715..117565TCONS_00073618-exon-scaffold_96-1510915933:116715..117565Clytia hemisphaericaexon
TCONS_00073618-exon-scaffold_96-1575043694:116715..117565TCONS_00073618-exon-scaffold_96-1575043694:116715..117565Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_96supercontigscaffold_96:111147..117565 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.279086	0.160615	0	0.142561	0.286411	0.115907	9.76096	10.6988	5.70458	3.64617	5.17058	3.42381	9.84152	9.42814	4.67285	18.9537	9.35408	10.7144	0.0268616	0	7.24128	7.14125	5.45825	6.35599	6.39559	11.4388	1.76779	0.747733	0.0575021	0.0291445
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073618 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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