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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073589 ID=TCONS_00073589|Name=TCONS_00073589|organism=Clytia hemisphaerica|type=transcript|length=670bp
TACAGTTCGACGTGTGGAATAAGAAGATCTAAGTGTGCGAAAAAAGGGAG
AAAGCATCAGCCTTCAAAGAGAAACATGACTGGTTTGTGGTTGTCAATCA
TTTGTATCTCGTATTTGTCGATTGCCGTCCAAGCTGAAACAACTGATGCA
AGAGCCGGGGGTGAAGATTTTTCGATCGAATGTGATACCGAAAAGATGAC
GATTTATATTCTTAAAGACGAAATTTCAATTCCTGAAAGCGATATTTCCA
AATACAACATCTCATGGAATGATCCTACTTGTGGACCAAGTGAACAATCA
AATGAAACATATTTGGTTTTGGAGGCTGGTTATTCGTCTTGTGGAACCAA
AGCTGTTGTTGAAGGCGATCATGTTATATTCAAGAATAAGATGTCCAAAT
GCTGACCACGTTTTCAAAGAAGAGTTTACCGCTGACAATGGAAAGAAATT
CCGATTTTCATTGAACGTATTCCGATTCAAAAACTCGAACGGTATGGTCT
ACATTCATTGCTCTGCACATGTCTGTTTGGAAGGAAGTAATACCACAGAA
TGTCAATTCGGTTGTGATGTTAATAACAGAAGACGAAGACGTTCAGTGGA
GGAGAATGCTTTGACACTAAATGATGATCTTTCCAAAGATTATGACATCC
GAACTGGGTTGATTATCGTA Run BLAST on NCBI transcript from alignment at scaffold_95:158924..163131+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073589 ID=TCONS_00073589|Name=TCONS_00073589|organism=Clytia hemisphaerica|type=transcript|length=4208bp|location=Sequence derived from alignment at scaffold_95:158924..163131+ (Clytia hemisphaerica)
TACAGTTCGACGTGTGGAATAAGAAGATCTAAGTGTGCGAAAAAAGGGAG
AAAGCATCAGCCTTCAAAGAGGTAAGTTCTTGCAAAAGTTTCTATTTTAT
GAAAATCGTTCTCTTTCACTTAATACCAAGCATTTTGCATTTTATCAACC
TAGCAAGCCTTAAAGCAATTTAGTAAGCTGTGAACGAGATAGGTGAAAAT
AACAATAccataacttggtctaatgtcgacatccctcctctaatttcgac
acccttttcatcagctgaaattgatagaaagattgaaactgtttttcttt
gcttagtggtcagagaggaataatcctttttcaatcagtgattcaagctt
tgatattaaagaagggtgtcggaattagacgagggatgtcgatattaggc
CAGCTTACGGTACAGGTTTATGATGAACTCCGTAATAATTCATAGGGCTG
AGACGGCAAAAGTATGATATTTTGTGCTTGTTTTTCAGAAACATGACTGG
TTTGTGGTTGTCAATCATTTGTATCTCGTATTTGTCGATTGCCGTCCAAG
CTGAAACAACTGGTAATTATCTTGAatatatacacccctgtctcaaagca
CCGGTGGAACTTTGTTCCTCAGTGGTGATGAAAATTCCTGGGgatataaa
ttctattgttccaaggatAAAACATCCAGTGGGGATGATTTTAGACTgca
gtttttaaacattgattttcggatggggatgaaatcaaagtaagCAATGA
CTTTAAGTTTGAAACTATCTATTTACAAAGCAAAGGTTACGATCTACAAT
CGGAAAATCCTCCAGACAAGAAAAAGTAATTTACATTTTCGACTGTTAGT
TTATTgtacaaaagaagaaaaaagcctTATTTAAATCGTTCACTGTTTTA
GATGCAAGAGCCGGGGGTGAAGATTTTTCGATCGAATGTGATACCGAAAA
GATGACGATTTATATTCTTAAAGACGAAATTTCAATTCCTGAAAGCGATA
TTTCCAAATACAACATCTCATGGAATGATCCTACTTGTGGACCAAGTGAA
CAATCAAATGAAACATATTTGGTTTTGGAGGCTGGTTATTCGTCTTGTGG
AACCAAAGCTGTTGTTGAAGGCGATCATGTTATATTCAAGAATAAGGTAA
ATTAAGTAAGATTGTTGATGTTTTTATTCGGCATTGGAAATAGTCGTGAT
TAGGGACACTCGATACAACTGAGAGCATGTTTCGAAGCTATGACACTAAA
ATTCTTTTTACAGTATAtagcccccaaaacggaggctgcccccaaaacgg
agcttttcattaaaattaagattctgacttgtagatttatcagaattaaa
cgatttttgtatattttgaaagaatgatggttatacttaaaaatgagcat
gtttttgctggtttgagacagattcaaaataacatatttgcgtctaaagg
aaatattttaacaccaaaatgagacaaaaattgcatataactcactctag
ctccttggatattgaaaataagttatgaaaacggggtataggaaactttc
tacacctaatgccgttcagaaaatgcaaatacatctgtgactttagaggc
tgggtaaaagatatagcatcttgaaggtcaaccagtattttggagcccta
gaatcagcattgacaaaaccgaaaattctaaatatgagaaaaagcaaaaa
gtcttggaattctattcctatcaccttgagttagtagtttataacaaaat
taacattatatataaaaatttttgctgaatcggcaaaaacggcaaattct
gtcatttttttgcaaaatataggagaaaaatatctttaaagcttaatatt
ttcagtttcagttaagctttttttctaaaNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNaaaatttctaaattttcagtttggactttgcaatat
cgaaaatcttaaaatatttcataaaagtcataaattttaaatccatcggg
tcgtaaatttaagggaaaacacaaatatgttcaagTTTTCCACCCCTATT
Acaactgggcttaataatttgattttaactacacctccgttttgggggcc
ccaaacctgcattttgacaaccaggggtatactgtgaagattttatcaaa
taaatttatgcccaaaaccctctaaatcatatttcaaaactatggtcaaa
attttgtattcatatcttaaagatatcttgaGAAATTTTTAAGCGATTGA
AGAATATtgtttaaattgaaaattttgaaaaagaacttccaggaaataaa
gtagagatgttaaaggtgttcatgcagcaaaattttttgtaaaatctctt
ttcctctagatttgagagaaatttcaaatttgatcgccgttttgggggtc
ACATACTGTAGAGAaaattacacccccttctcacaaacgtAGTAGGAATT
TTTACCCATTGGAGTTAGAAATtacgtttctttataagaacatatataAG
GACATTTATATAAGAGCATAGGgattcgatagccaaaatgttaagaacaa
gttaggaatatttttaggtttaaatctgaaaaacttaaaacgggcttcaa
aaactttggatgttcttataaaaaaacgtgtaggaatTTATACTAATTCT
ATGCTTATAATAATGTGATAATTTTCTCCTCCAGGTATCCATCAACTTGA
ACAAAACAAACGCATATCAAAACGATTTATTGGAAAGGATTGACACCTTT
GCCACATATTCCGTTGAATGCAACGTCCCACAAGGTGTGAATGTAACGCA
CGAACATGGAGCCAATATCACCAGAGATGCTGATTTGGTGGAAGGTGTAT
CAAGTAAGTAAAACTCGTAAGGAGATATCTGCCGATAAAAAAAGAAGCGT
TTTAACCAGAGCTGtgcatcaactttttttgaTAATCTTTTGAGTATTTT
AATCGCATTAATTTTcacgagttttaatttcgcgttttcgcaaatatttt
cattttcgcgaaaataacaCTCGCAAAATCGCGTTAGATGGCAGACTCGT
AAagttaaatccacgcgaaattttcaaaatcagattttAAGCGTAAAATC
AACTGTGAATACGCTACTTTCTAAGTTTAATTTTTTGGTTCAGAAACGTG
GAAGTTTATCTAATTGAAGTAAAATGCCTCTATATTGACAAATTCAGCAT
CAACTTGAGCTTAAAAATTATCACTATCTTTCTAGGTTCGACTGATGAAT
TCACTGTCGCAATGAATCTCCATAAATCATCAAACTTCAATGAAAGTCTT
ACATATCCTGCAGTTATTGATAGATTGGGACGTTTCAATTTGGAACTTGA
AATTGACACTGTTGCAAATTTGTATATCATTCCACGAGATTGTCATGGTA
CTTCTACTTCTGATCGAGATGACGTCATTCGGGAAGCTATTGTCATTGAC
GGGTAATTATGCAAATAATCTCAAGCTTTAAATTCTGCTCTATTGAATAA
TGCAGATTCCATATGATTTGACCATGATTGATAAAAAATCACTCGCCGTA
TTGAACATTTCATCAAAACTTGTCATTTATACCCTATTAAGAGATAGGGA
GATATGTAGTGAAAAATTAGGTAGCTAAATTTCAGCATATAGCTTAAATC
TTTACCCGTAACATTAATACAATCTTTTGCCATTTCTTGCTTTTATCCAA
ACAAACTTAACAATTTCAACTGTTTTAGATGTCCAAATGCTGACCACGTT
TTCAAAGAAGAGTTTACCGCTGACAATGGAAAGAAATTCCGATTTTCATT
GAACGTATTCCGATTCAAAAACTCGAACGGTATGGTCTACATTCATTGCT
CTGCACATGTCTGTTTGGAAGGAAGTAATACCACAGAATGTCAATTCGGT
TGTGATGTTAATAACAGAAGACGAAGACGTTCAGTGGAGGAGAATGCTTT
GACACTAAATGATGATCTTTCCAAAGATTATGACATCCGAACTGGGTTGA
TTATCGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073589-exon-scaffold_95-1491911889:158924..158994 | TCONS_00073589-exon-scaffold_95-1491911889:158924..158994 | Clytia hemisphaerica | exon |
| TCONS_00073589-exon-scaffold_95-1510915933:158924..158994 | TCONS_00073589-exon-scaffold_95-1510915933:158924..158994 | Clytia hemisphaerica | exon |
| TCONS_00073589-exon-scaffold_95-1575043694:158924..158994 | TCONS_00073589-exon-scaffold_95-1575043694:158924..158994 | Clytia hemisphaerica | exon |
| TCONS_00073589-exon-scaffold_95-1491911889:159412..159485 | TCONS_00073589-exon-scaffold_95-1491911889:159412..159485 | Clytia hemisphaerica | exon |
| TCONS_00073589-exon-scaffold_95-1510915933:159412..159485 | TCONS_00073589-exon-scaffold_95-1510915933:159412..159485 | Clytia hemisphaerica | exon |
| TCONS_00073589-exon-scaffold_95-1575043694:159412..159485 | TCONS_00073589-exon-scaffold_95-1575043694:159412..159485 | Clytia hemisphaerica | exon |
| TCONS_00073589-exon-scaffold_95-1491911889:159825..160069 | TCONS_00073589-exon-scaffold_95-1491911889:159825..160069 | Clytia hemisphaerica | exon |
| TCONS_00073589-exon-scaffold_95-1510915933:159825..160069 | TCONS_00073589-exon-scaffold_95-1510915933:159825..160069 | Clytia hemisphaerica | exon |
| TCONS_00073589-exon-scaffold_95-1575043694:159825..160069 | TCONS_00073589-exon-scaffold_95-1575043694:159825..160069 | Clytia hemisphaerica | exon |
| TCONS_00073589-exon-scaffold_95-1491911889:162852..163131 | TCONS_00073589-exon-scaffold_95-1491911889:162852..163131 | Clytia hemisphaerica | exon |
| TCONS_00073589-exon-scaffold_95-1510915933:162852..163131 | TCONS_00073589-exon-scaffold_95-1510915933:162852..163131 | Clytia hemisphaerica | exon |
| TCONS_00073589-exon-scaffold_95-1575043694:162852..163131 | TCONS_00073589-exon-scaffold_95-1575043694:162852..163131 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_95 | supercontig | scaffold_95:158924..163131 + |
Blast
The following BLAST results are available for this feature:
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