TCONS_00073455 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073455
Unique NameTCONS_00073455
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length802

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073455 ID=TCONS_00073455|Name=TCONS_00073455|organism=Clytia hemisphaerica|type=transcript|length=802bp
ATTTCACAAATAAAAGATATAAGTTACTGCGAATTCCAATATAATCGAAT
ATTTTTGcatgatttttgaagaaaaagtagtttttgtaagaaaattttag
aatttttgcctGTTCGGTAAATTCCGATATTATATGTTGCGCTCACATGG
CGTAACATTTTCGAATAAGAGACATGGTTCTGTTACCCAGGCTCCTTTCA
GTCAAATAGTCAAGCGATAGCACAGAAGCAGCAATATGCCTctGTTCAAA
GACTTGCTAAACCCATCCCTTGAGGAAGAACGAAGAAAACACAAGTTTTC
AAGGCTAGTGCCCTCTCCCAACTCATATTTTATGGATGTTAAGTGTCCAG
gaTGTTATAAAATCACCACCGTTTTCAGTCACGCACAAACTGTAGTCTTA
TGTGTCAGCTGCTCAACTGTTTTATGTCAACCAACTGGTGGAAGAGCCAG
ATTAACAGAAGGGTGTTCATTCAGGAAGAAGCCACAATAAATTCGATCAA
TGAAATGAGGGGATGTCAAGCGTAAACCGTTTGCCAACTTATCACCTGAA
GGATTATATACACCTACTGATGGATATCACTCGAAATATAtcatttaaaa
taatattttgtacATTGTAAAATTCAATCCTTAATGAGTTGGGAAAAGAT
TTGTGCTTGAGattacttttcaaaatatttcgtttcaattcttttaaaag
TTCTGAAAATGCATGTAGTTAACCATCGTCAGATCACAAGCAAAATCATT
GAATCAGATGCATCTGGAAACTTTCTTCACTATTTTGACTGCACAGAATC
AC
Run BLAST on NCBI

transcript from alignment at scaffold_92:12021..20823-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073455 ID=TCONS_00073455|Name=TCONS_00073455|organism=Clytia hemisphaerica|type=transcript|length=8803bp|location=Sequence derived from alignment at scaffold_92:12021..20823- (Clytia hemisphaerica)
ATTTCACAAATAAAAGATATAAGTTACTGCGAATTCCAATATAATCGAAT
ATTTTTGCATGATTTTTGAAGAAAAAGTAGTTTTTGTAAGAAAATTTTAG
AATTTTTGCCTGTTCGGTAAATTCCGATATTATATGTTGCGCTCACATGG
CGTAACATTTTCGAATAAGAGACATGGTTCTGTTACCCAGGCTCCTTTCA
GTCAAATAGTCAAGCGATAGCACAGAAGCAGCAATATGCCTGTATGTAAT
TTATTTGGTATTTTGGTTGTTATTGTTTTATTCTGGATTATTTTTGGAAT
ATTTTGGAGTTTGATGTTGGTATCATGTGTTGAGTTTGTTATTTCTTTCT
TTTTAGCTGTTCAAAGACTTGCTAAACCCATCCCTTGAGGAAGAACGAAG
AAAACACAAGTTTTCAAGGCTAGTGCCCTCTCCCAACTCATATTTTATGG
ATGTTAAGTGTCCAGGTAATAAAACTTTACAACATTAAATCACATTTAAA
AGTAATGGAGTTAAGACCTACTGAACTTGTTACATAAAATATCTTTGATT
TGCTGAGTTAGCACTTTTCTCTGCTGACTTACAAATTCAGTATTCAAACT
AGCCACTTAAATCACTCACTCATTATTTGATTCTGGTACAATTGAATAAT
GAAATAGAGGAAGGCTAGTAATTTTTACATCATCATTAGCCTCATTTGGG
TGTGCGACGAATGTACGATAAGTATAAGACAATCCAACCTAATTAACCAT
TTGTGGATAAAGGACCTTGATGCTTTCCTTAGTGCTGTGGAAAGAATGGC
AGAATTCAATCTAACATTCTATGTCTGGTGGTAAAATTTGCAATTTATTA
ATTATGTTGGCGCGTGCGCCTCTTTTCCCATCTTGCACCCTTATTGAAAA
ATTGAATGTTGGTACAAAAGAAATTTTGCTTGGCGCGAGGCTTGCTGCAC
GGAAAAATATCTTCGGCGCGAGATTTCGTGGAATCCATACTGGACAGTAT
GTATTGTTTGGTTGTGTATAATATTCTCAACTTCAGTTGAGCTACAATCT
GACAATGTCTGTGTGTGTGTGTGTGTGTGTCTGTCTGTCTGTCACAAAAA
CTTTAGGGCAGCCTGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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AGCCTTTGACGCTAAGAAATTTCAACAGAATATTGATTTTCAAACCTGTA
ACATTTTGTATTCCGTCCTTCGCTACACCTGCCATCTTATAATTCAAATG
CATAAAATATAACAGAGATGATATCCAATACTCTTCCGTTACGTTTGTAG
GAAAATGTTATTATCTCCCTAACCATAAAAACAGAGATACCGCAATAAAA
AATAGATGGGCCGTATTTTGATATACAAGGGCCGCGCTGATGGACCGTCT
ACATAAATATGACAAAATAAGGACCCGTTTGTCTGGGGACAAACAAATGT
GAAAGTCATAAGTCAAAACCACTGTTTTAAAACCAAGCGAAACGAAGCAC
AAAAATTAATGTGGCTGGAATATCAATATCTGTAATAATATAGAAGAAAA
ATTACTTTCATCGATTTTTGCTATAATTAATGTAAATGACGCTAAGAAAG
AGGGGTGGGGGGTTCTTCAGATAGTGTCACAATGACGTTAGTTGCAGGAA
AAATCAATATGCGAGTGACCCCTAACTGTTATTTGGCAAAGTTTTAAGTC
AATTTTGTAGGGTATTTTAGTTTGAAAACCAGACCCCCGCGCTCGATAGG
ATCGGTCATCAGAACGGCTCGATGACTGATCGATAGATTACTTAGCGATC
CGGATAGGAGATCGATAGAGGATCGATACTCAAGATTTTTTAAGCTTATG
ATTAGTTATCGATCTATCATCGATCTTTTATCGATATTATCGACCCTATC
GACTCTTTCTAAAAATTGTGCTTTAATATTAATTGATCTTTCTTTCTATC
GATTACCTATCGATTTACGATCGATAAAAAATCAATTAACGATCAATGAT
GAATCGATATACTCGATTGAAATACTAGCTCGATAATGGATCAACAAAGG
ATCGATACTCAAGATTTTTTAATGGCTGAATCTTCCATCGATCTCCTATC
TGGATCGTTAAGTTAAGTAATCCATCCATCACATATCGAGCCGTTCCGAT
GATCGATCTTATCGAGCGCGGGGGTCTGGTAAAAAGTACAACTGTTCCCC
CTTCCCATCCAGAGCCCTATAGCAAACTCTAATTTCACACATATTTTTCA
AAATTTGTACATTCACACATATTTTCATGCTCACGCAAACCTGTGTCACA
CAAAATTGGTAAACTTTTTGGGAAAATCAGATAAGTTGGATGTGATAAGA
CAGTCACAAGCAGATTTGTTTGCGATCAGGCGTCTGTATAACTGTATTAA
AAACTTGTTGAATGGAGGTTACACACCTTGCCTGACTCTCTGGTTACCAA
AGCACAAGACTTAATATATTCATCCATTTTCAGGATTATTTAAAATGCTG
TAAAATGTATGAAATTGTGATGAGAAGATTAAAATTGCCTTACAGGATAA
CTCAAACTTGATTTATTTTTTTTACAGGATGTTATAAAATCACCACCGTT
TTCAGTCACGCACAAACTGTAGTCTTATGTGTCAGCTGCTCAACTGTTTT
ATGTCAACCAACTGGTGGAAGAGCCAGATTAACAGAAGGTATTAAATAAC
TTTATTAAAAAAAAAAGGGTTATTCAAAACAAAGGGGTAACCCATTTTTT
TAACCTTGCTTTCCCAATGTAGACTTTATACGTATAGAAAGAAAAAATTT
TAACTAGAGATTTGTCAAAGTCAGATTGACAGTCATGGAAGGTCTGAATC
ACTTTACCAATCTTGCAAAAAAGAGTGAGCAAGAATAGAAAAAAATTTTC
TAAACATTTTTCATTTCTTTTGGGATATCAGCACAACTTTGAGGTTAAGA
AGCTGTATAATAGTAATAAAAAACAAATATATTTTAAAAATATCTTTAAT
ACTGCTTCTTTTGGTGATTTTGGTCAAGCTGTCACTTTTTATGGGTTGCA
GGAAACCCAAACAATCATAAGATGACTGCATTGAATCTGCAAGAAATATT
TCTATTGAACTAATCTTAAGGACTGTCTTTACACTTGATGCAGCTTGATG
TATGGTGTTTGTTTTTTCGATTTAACTTTTTTTCCTGAAATTTTTTCATG
ATAAAGGTATATATTTCTGAAAGCCAATAAAATTATCTATCAAATGTAAT
CAATTAGGATTATTATGCACAAAGTGAGTAGAAATTACAATGCTTTGAAA
AATATAACGTTTGTTAACTTCAAAGAGTTCAACTTGCCCAACCACTTACT
TTTTGGACCTACCCTAAGGTAGTCCTTTAAATTAACCCTTGTCCGTCCGT
CCGTTCGTCTGTTGCCAGCTTTTCTCGGGATCGGCTCATCATTAGTTTTT
TCTAATTTTTTGCACAATGATGCAAAATGGCAATACCCAAAATGTGACGG
AGCCCGATTTTCGAAAAAAAATTATTTCCGGCCGAAAATGCCGGAAATAT
GCCGGAAAACCCGTTTTTTTGGCATTTTCTCAAGATTTCATCATTANNNN
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CCTCACATATAAATGAATTTGTGTTGCAATTTTGATTACTTTTAATCCTG
AAGAGCTTTCCTAGGAAAGAAACAAATTTAAGGTAGCTTCAATAAGAATA
TTTTTTGACTGTCCACGTGAGCAACTTGCAACAGTCTTAGTTTCGTATGA
TTACCTGGCGTTAAAACTATAAATTTGACTAGGCTTAATAAGATTTTCAT
TATTTTTCAATCAGGGTTAATTTTTATAATTTCATTATTAATTTTTCACC
GGACTGGCGGCTACTTGCCCTGCCATATTTCTCACCAAATTTGTTTTCTT
TTTTTTTACTAGGGTGTTCATTCAGGAAGAAGCCACAATAAATTCGATCA
ATGAAATGAGGGGATGTCAAGCGTAAACCGTTTGCCAACTTATCACCTGA
AGGATTATATACACCTACTGATGGATATCACTCGAAATATATCATTTAAA
ATAATATTTTGTACATTGTAAAATTCAATCCTTAATGAGTTGGGAAAAGA
TTTGTGCTTGAGATTACTTTTCAAAATATTTCGTTTCAATTCTTTTAAAA
GTTCTGAAAATGCATGTAGTTAACCATCGTCAGATCACAAGCAAAATCAT
TGAATCAGATGCATCTGGAAACTTTCTTCACTATTTTGACTGCACAGAAT
CAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045590XLOC_045590Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073455-exon-scaffold_92-1575043694:20583..20823TCONS_00073455-exon-scaffold_92-1575043694:20583..20823Clytia hemisphaericaexon
TCONS_00073455-exon-scaffold_92-1575043694:20359..20467TCONS_00073455-exon-scaffold_92-1575043694:20359..20467Clytia hemisphaericaexon
TCONS_00073455-exon-scaffold_92-1575043694:15736..15846TCONS_00073455-exon-scaffold_92-1575043694:15736..15846Clytia hemisphaericaexon
TCONS_00073455-exon-scaffold_92-1575043694:12021..12361TCONS_00073455-exon-scaffold_92-1575043694:12021..12361Clytia hemisphaericaexon
TCONS_00073455-exon-scaffold_92-1510915933:20583..20823TCONS_00073455-exon-scaffold_92-1510915933:20583..20823Clytia hemisphaericaexon
TCONS_00073455-exon-scaffold_92-1510915933:20359..20467TCONS_00073455-exon-scaffold_92-1510915933:20359..20467Clytia hemisphaericaexon
TCONS_00073455-exon-scaffold_92-1510915933:15736..15846TCONS_00073455-exon-scaffold_92-1510915933:15736..15846Clytia hemisphaericaexon
TCONS_00073455-exon-scaffold_92-1510915933:12021..12361TCONS_00073455-exon-scaffold_92-1510915933:12021..12361Clytia hemisphaericaexon
TCONS_00073455-exon-scaffold_92-1491911889:20583..20823TCONS_00073455-exon-scaffold_92-1491911889:20583..20823Clytia hemisphaericaexon
TCONS_00073455-exon-scaffold_92-1491911889:20359..20467TCONS_00073455-exon-scaffold_92-1491911889:20359..20467Clytia hemisphaericaexon
TCONS_00073455-exon-scaffold_92-1491911889:15736..15846TCONS_00073455-exon-scaffold_92-1491911889:15736..15846Clytia hemisphaericaexon
TCONS_00073455-exon-scaffold_92-1491911889:12021..12361TCONS_00073455-exon-scaffold_92-1491911889:12021..12361Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_92supercontigscaffold_92:12021..20823 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1176.03	1223.59	1303.79	1429.9	983.257	821.803	1276.14	1372.21	2437.19	2000.14	2670.26	3136.54	3044.93	3230.41	2949.83	2791.35	3148.85	3218.86	1832.89	1951.6	3073.81	2963.55	2005.37	1947.96	1798.49	1783.06	2985.19	3066.1	1738.52	1784.4
Blast
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BLAST of TCONS_00073455 vs. Swiss-Prot (Human)
Match: RS27L (40S ribosomal protein S27-like OS=Homo sapiens GN=RPS27L PE=1 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 2.342e-27
Identity = 71/82 (86.59%), Postives = 77/82 (93.90%), Query Frame = 2 
Query:  236 MPLFKDLLNPSLEEERRKHKFSRLVPSPNSYFMDVKCPGCYKITTVFSHAXXXXXXXXXXXXXXXPTGGRARLTEGCSFRKK 481
            MPL +DLL+PSLEEE++KHK  RLV SPNSYFMDVKCPGCYKITTVFSHAQTVVLCV CSTVLCQPTGG+ARLTEGCSFR+K
Sbjct:    1 MPLARDLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82
The following BLAST results are available for this feature:
BLAST of TCONS_00073455 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS27L2.342e-2786.5940S ribosomal protein S27-like OS=Homo sapiens GN=... [more]
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