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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073012 ID=TCONS_00073012|Name=TCONS_00073012|organism=Clytia hemisphaerica|type=transcript|length=2477bp CTTATAACTGTCTCTCCTCCGTACCGGATTTTCAATCAGGTTTTGAGGTT TCATGTTAATAACCGAACAGAAAAACGAAGGAGAGCTTTTTAATCTGATG GTTAACGAGAAAACGCTATTAAGTAGCATATTACTGATAACACAGATTTT CATTGATggttaaaaaagaattttgatgtGGCATTTTTGGAACAGGGCTT AAGCGAATGGATAACGGAATAAAGAAGATATATTTTATTTGGGACAGAAA AGAATGGTTTCATAGCTTTTAAAGACCAGTGTGAAATCACTTGATCAGAA AGACTTTTAAACGATGTCGTCTTCACCAGCACCACAAACGACTTctacaa caaaatcaaaattcttgCATATGAAACTTTCATCATCCATCGAACGCAAT TTCTATTGGATAATATGGCTAACATCAATCATCTATCCTTTCTATCACTC ACACACAACCTCCATGAAGTACTTCGACCAAATCAAAGACGACTTGACGC CATCATGGTTCGGTCTCCATAAAGATGTTTCAGATTACGAATGGACATTT TGGCGATCGATGGCGTTCCTCCTAGCAGCATTATTCTCAATAAATTCAGC CATAGTATTTCTGGTTAAACGTTTTATCCCAGCAGAAAGCCAGCACCTGC TTATATTATTATCAACATTAATTCTCCAAGGAGCTGTCATATCCATAAAA GGACTATTAGTGGTTCTATTGTTCATCACACTCAGTTACTATTTGCTTGA CCGTACCAAAAGGATCAGCACGATTTGGATTTCCTCGATCATTTTATTAT ACATTATAAACAACCATGATTGGAAAACCAAGCTTTTTGAATACATGAGA ATCCATAAAGATTCATACGATCTGGTGAAATTAGTTCTCATGATGTGCAT TTTAAGAATTATTTCGTTCTCGAATTTCTATCTACGATCGAAAGACCGGC AACATGATCTGGACCTTCCAAAGCTAATCACCTTTTGTCTATACATCCCT GTATGTTACAATGGACCTATAATCAATTTCGATACGTTTTACAAAGATGT ATACCAGACTGCACGACAATATTCAATCACAGAAATCACCAAAGATGTAG TATACACACTGGCAAACATCTTCGCATTGgaaatcttttttcacttcATT TACGCCAATACCTTATGTGTATACCATGATATTCTCCAAGAGATGACAGT CTTTGATGCAATATCCCTTTTCTGGATACATCTCCACATTTTCAATATCA AATATTTCATCTTTTACAGATTCTCTGGTATATTTGCCAAGGTTGACGGA GTTGAACCACCTGGACCACCGAAATGTATTGCCTCCTTATACACCTTTGT GGATATGTGGAGATATTTTGATAAAGGCCTAaacacatttttatttcaaa acatttataTACCGTTGGGTGGTTCTGCCCAAGGTTTTGGTAAACAAACT CTGGCCTCTTGTCTATGTTTCAGCTTCGTAGGTTATTGGCACGGAGCTGA TAAATCATTAATGTTCTGGGCCCTCACAAACTGGCTTGGAATCGTTATAG AGTCTCTTGGGACAcgaataatcaaaacaaacatttacAGAAACTCTATA AACAGATTCGGGTGTTTGGCGCACCGACGATTGTGTGCACTGGGTGGTGC TTTTTCAGTGTTCACTTTAATTTTTNTAGAAACACTATAAACAGATTTGG GTGTTTGGCTCACCGACGATTGTGTGCACTGGGCGGCGCTTTTTCAGTGT TCACTTTAATTTTTACTAATATGGTCTTTTTGGTTGGTCATGACTCTGCA GTTATTTTGTTATATAGGGTTTTCTCTGTTTGGCATTGCCCTCTGATTTG TTTATTTGTATTTTACTGTGGAAATAATTGTAGTATTGATGCTAGTTATA cttaaattcatgatattcatgacgtaatgttttctacggaaatgcCCCGG TTTTAGCCAATAGTGGCAAACTTAAATTAGACAAACGTTGTATAAATtta ccactactggcaaaaaccggggtctttccgtggaaaacattacgtcatga atagcATGAATATCTTTTTCTCAGTGCCCGGAAAAGGCACCTCCCTAATA TTTGAAGCTCTAATAAGCGATAAAACTCTTTATAACTTTAGGAGGGCTAA CTTTCTTCTACTTCACTTTCAATGGGGATGAGATTGCTATCAAAATGTTC AATGGGAGTTCACTTTCAGGGAGTTTACAAATTTGGGCGATTTTCAACTA AATTTCTCAGTGGGGGTATGCTTCATCGGGTTTGTAAGCGAGAATGCATT TAGGATTATATATATTCATAATTATCAGGACAAAAGAGATTAGAGACAAA TAAAACAACATACTGtataattataattataattataattttcatcgcaa cctttttagaatttcaatGTGTGCTGACAGGATTTAGTATGAGCTGTTGA TGCACCCTTTTACTTTGCAGTAATCCG Run BLAST on NCBI transcript from alignment at scaffold_86:826455..830221- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073012 ID=TCONS_00073012|Name=TCONS_00073012|organism=Clytia hemisphaerica|type=transcript|length=3767bp|location=Sequence derived from alignment at scaffold_86:826455..830221- (Clytia hemisphaerica) CTTATAACTGTCTCTCCTCCGTACCGGATTTTCAATCAGGTTTTGAGGTT
TCATGTTAATAACCGAACAGAAAAACGAAGGAGAGCTTTTTAATCTGATG
GTTAACGAGAAAACGCTATTAAGTAGCATATTACTGATAACACAGATTTT
CATTGATGGTTAAAAAAGAATTTTGATGTGGCATTTTTGGAACAGGGCTT
AAGCGAATGGATAACGGAATAAAGAAGATATATTTTATTTGGGACAGAAA
AGAATGGTTTCATAGCTTTTAAAGACCAGGTAAGAATATTGTTTTACTTT
TTGCTTCCCAATGAAGCCCTGTCAACTAAAGTATAACACACACTGTTGAT
GGTTACCTACTGCTAACAACGTTGGGGTTTATAAACATCTAGGTAGACCC
AGGCGGAAGAAGCAGAAACATCAAAACTAAGTTAACAGCATCCATATCCA
GGTTAGAAATCTAAGAAATCTTCTTACTTTCAGTGTGAAATCACTTGATC
AGAAAGACTTTTAAACGATGTCGTCTTCACCAGCACCACAAACGACTTCT
ACAACAAAATCAAAATTCTTGCATATGAAACTTTCATCATCCATCGAACG
CAATTTCTATTGGATAATATGGCTAACATCAATCATCTATCCTTTCTATC
ACTCACACACAACCTCCATGAAGTATTTCGACCAAATCAAAGACGACTTG
ACGCCATCATGGTTCGGTCTCCATAAAGATGTTTCAGATTACGAATGGAC
ATTTTGGCGATCGATGGCNTCGATCTAGTATATTAAATGAAGATCAGTGG
GGAAAAAACGTTCCTTAAATATAGGGTATAACGCCTTACTGATCATGTAC
ATTGAAAAATATTTGAGAAGTCAGTTCACTTTCTGTTTATTCTACAATAT
TTTTCGTTGGAATATGCGATAACCTTTGCTAACAATGAAAGTTCTACTCT
AAATGCAAATGATAAAAAGCTACAGTATTTAACTAGCTGAATTAACCTTT
GCTAACAATGAAAGTTCTACTCTAAATGCAAATGATAAAAAGCTACAGTA
TTTAACTAGCTGAATTAACAAGCTATCAGAGACAAGCTTATAACTGTCTC
TCCTCCGTACCGGATTTTCAATCAGGTTTTGAGGTTTCATGTTAATAACC
GAACAGAAAAACGAAGGAGAGCTTTTTAATCTGATGGTTAACGAGAAAAC
GCTATTAAGTAGCATATTACTGATAACACAGATTTTCATTGATGGTTAAA
AAAGAATTTTGATGTGGCATTTTTGGAACAGGGCTTAAGCGAATGGATAA
CGGAATAAAGAAGATATATTTTATTTGGGACAGAAAAGAATGGTTTCATA
GCTTTTAAAGACCAGGTAAGAATATTGTTTTACTTTTTGCTTCCCAATGA
AGCCCTGTCAACTAAAGTATAACACACACTGTTGATGGTTACCTACTGCT
AACAACGTTGGGGTTTATAAACATCTAGGTAGACCCAGGCGGAAGAAGCA
GAAACATCAAAACTAAGTTAACAGCATCCATATCCAGGTTAGAAATCTAA
GAAATCTTCTTACTTTCAGTGTGAAATCACTTGATCAGAAAGACTTTTAA
ACGATGTCGTCTTCACCAGCACCACAAACGACTTCTACAACAAAATCAAA
ATTCTTGCATATGAAACTTTCATCATCCATCGAACGCAATTTCTATTGGA
TAATATGGCTAACATCAATCATCTATCCTTTCTATCACTCACACACAACC
TCCATGAAGTACTTCGACCAAATCAAAGACGACTTGACGCCATCATGGTT
CGGTCTCCATAAAGATGTTTCAGATTACGAATGGACATTTTGGCGATCGA
TGGCGTTCCTCCTAGCAGCATTATTCTCAATAAATTCAGCCATAGTATTT
CTGGTTAAACGTTTTATCCCAGCAGAAAGCCAGCACCTGCTTATATTATT
ATCAACATTAATTCTCCAAGGAGCTGTCATATCCATAAAAGGACTATTAG
TGGTTCTATTGTTCATCACACTCAGTTACTATTTGCTTGACCGTACCAAA
AGGATCAGCACGATTTGGATTTCCTCGATCATTTTATTATACATTATAAA
CAACCATGATTGGAAAACCAAGCTTTTTGAATACATGAGAATCCATAAAG
ATTCATACGATCTGGTGAAATTAGTTCTCATGATGTGCATTTTAAGAATT
ATTTCGTTCTCGAATTTCTATCTACGATCGAAAGACCGGCAACATGATCT
GGACCTTCCAAAGCTAATCACCTTTTGTCTATACATCCCTGTATGTTACA
ATGGACCTATAATCAATTTCGATACGTTTTACAAAGATGTATACCAGACT
GCACGACAATATTCAATCACAGAAATCACCAAAGATGTAGTATACACACT
GGCAAACATCTTCGCATTGGAAATCTTTTTTCACTTCATTTACGCCAATA
CCTTATGTGTATACCATGATATTCTCCAAGAGATGACAGTCTTTGATGCA
ATATCCCTTTTCTGGATACATCTCCACATTTTCAATATCAAATATTTCAT
CTTTTACAGATTCTCTGGTATATTTGCCAAGGTTGACGGAGTTGAACCAC
CTGGACCACCGAAATGTATTGCCTCCTTATACACCTTTGTGGATATGTGG
AGATATTTTGATAAAGGCCTAAACACATTTTTATTTCAAAACATTTATAT
ACCGTTGGGTGGTTCTGCCCAAGGTTTTGGTAAACAAACTCTGGCCTCTT
GTCTATGTTTCAGCTTCGTAGGTTATTGGCACGGAGCTGATAAATCATTA
ATGTTCTGGGCCCTCACAAACTGGCTTGGAATCGTTATAGAGTCTCTTGG
GACACGAATAATCAAAACAAACATTTACAGAAACTCTATAAACAGATTCG
GGTGTTTGGCGCACCGACGATTGTGTGCACTGGGTGGTGCTTTTTCAGTG
TTCACTTTAATTTTTNTAGAAACACTATAAACAGATTTGGGTGTTTGGCT
CACCGACGATTGTGTGCACTGGGCGGCGCTTTTTCAGTGTTCACTTTAAT
TTTTACTAATATGGTCTTTTTGGTTGGTCATGACTCTGCAGTTATTTTGT
TATATAGGGTTTTCTCTGTTTGGCATTGCCCTCTGATTTGTTTATTTGTA
TTTTACTGTGGAAATAATTGTAGTATTGATGCTAGTTATACTTAAATTCA
TGATATTCATGACGTAATGTTTTCTACGGAAATGCCCCGGTTTTAGCCAA
TAGTGGCAAACTTAAATTAGACAAACGTTGTATAAATTTACCACTACTGG
CAAAAACCGGGGTCTTTCCGTGGAAAACATTACGTCATGAATAGCATGAA
TATCTTTTTCTCAGTGCCCGGAAAAGGCACCTCCCTAATATTTGAAGCTC
TAATAAGCGATAAAACTCTTTATAACTTTAGGAGGGCTAACTTTCTTCTA
CTTCACTTTCAATGGGGATGAGATTGCTATCAAAATGTTCAATGGGAGTT
CACTTTCAGGGAGTTTACAAATTTGGGCGATTTTCAACTAAATTTCTCAG
TGGGGGTATGCTTCATCGGGTTTGTAAGCGAGAATGCATTTAGGATTATA
TATATTCATAATTATCAGGACAAAAGAGATTAGAGACAAATAAAACAACA
TACTGTATAATTATAATTATAATTATAATTTTCATCGCAACCTTTTTAGA
ATTTCAATGTGTGCTGACAGGATTTAGTATGAGCTGTTGATGCACCCTTT
TACTTTGCAGTAATCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00073012-exon-scaffold_86-1575043694:829943..830221 | TCONS_00073012-exon-scaffold_86-1575043694:829943..830221 | Clytia hemisphaerica | exon |
TCONS_00073012-exon-scaffold_86-1575043694:826455..828652 | TCONS_00073012-exon-scaffold_86-1575043694:826455..828652 | Clytia hemisphaerica | exon |
TCONS_00073012-exon-scaffold_86-1510915933:829943..830221 | TCONS_00073012-exon-scaffold_86-1510915933:829943..830221 | Clytia hemisphaerica | exon |
TCONS_00073012-exon-scaffold_86-1510915933:826455..828652 | TCONS_00073012-exon-scaffold_86-1510915933:826455..828652 | Clytia hemisphaerica | exon |
TCONS_00073012-exon-scaffold_86-1491911889:829943..830221 | TCONS_00073012-exon-scaffold_86-1491911889:829943..830221 | Clytia hemisphaerica | exon |
TCONS_00073012-exon-scaffold_86-1491911889:826455..828652 | TCONS_00073012-exon-scaffold_86-1491911889:826455..828652 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_86 | supercontig | scaffold_86:826455..830221 - |
Blast
BLAST of TCONS_00073012 vs. Swiss-Prot (Human)
Match: HHAT (Protein-cysteine N-palmitoyltransferase HHAT OS=Homo sapiens GN=HHAT PE=1 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 7.428e-40 Identity = 109/424 (25.71%), Postives = 203/424 (47.88%), Query Frame = 2
Query: 434 YPFYHSHTTSMKYFDQIKDDL---TPSWFG-LHKDVSDYEWTFWRSMAFLLAALFSINSAIVFLVKRFIPAESQHXXXXXXXXXXQGAVISIKGLLVVLLFITLSYYLLDRTKRXXXXXXXXXXXXXXXNNHDWKTKLFEYMRIHKDSYDLVKLVLMMCILRIISFSN--FYLRSKDRQHDLDLPKLITFCLYIPVCYNGPIINFDTFYKDVYQTAR---QYSITEITKDVVYTLANIFALEIFFHFIYANTLCVYHDILQEMTVFDAISLFWIHLHIFNIKYFIFYRFSGIFAKVDGVEPPGPPKCIASLYTFVDMWRYFDKGLNTFLFQNIYIPLGGSAQGFGKQTLASCLCFSFVGYWHGADKSLMFWALTNWLGIVIESLGTRIIKTNIYRNSINR-FGCLAHRRLCALGGAFSVFTLIF 1675
Y FY + S ++ +++ + T + FG L KD +D+EW+FW + +V + + + + +++L + V+ G+ +VLL T+S+ + ++ T S ++L + + K Y ++ Y L++ L + L SFS + + P ++ + Y PV +NGPI++F F K + Q + S+ + + L + E+ H +Y + + +L+ ++ + L + F +KY + + + ++DG+ PP P+C++++++F MWRYFD GL+ FL + +YIP+GGS G ++ + F+FV YWHG L WA NWLG+ +E+ R+++T ++S+ R F A RR A + S LI
Sbjct: 20 YSFYEVYKVSREHEEELDQEFELETDTLFGGLKKDATDFEWSFWMEWGKQWLVWLLLGHMVVSQMATLLARKHRPWILMLYGMWACWCVLGTPGVAMVLLHTTISFCVAQFRSQLLTWLCSLLLLSTLRLQGVEEVKRRWYKT--ENEYYLLQFTLTVRCLYYTSFSLELCWQQLPAASTSYSFPWMLAYVFYYPVLHNGPILSFSEFIKQMQQQEHDSLKASLCVLALGLGRLLCWWWLAELMAHLMYMHAIYSSIPLLETVSCWTLGGLALAQVLFFYVKYLVLFGVPALLMRLDGLTPPALPRCVSTMFSFTGMWRYFDVGLHNFLIRYVYIPVGGSQHGLLGTLFSTAMTFAFVSYWHGGYDYLWCWAALNWLGVTVENGVRRLVETPCIQDSLARYFSPQARRRFHAALASCSTSMLIL 441
The following BLAST results are available for this feature:
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