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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073011 ID=TCONS_00073011|Name=TCONS_00073011|organism=Clytia hemisphaerica|type=transcript|length=2375bp
TAACGAGAAAACGCTATTAAGTAGCATATTACTGATAACACAGATTTTCA
TTGATggttaaaaaagaattttgatgtGGCATTTTTGGAACAGGGCTTAA
GCGAATGGATAACGGAATAAAGAAGATATATTTTATTTGGGACAGAAAAG
AATGGTTTCATAGCTTTTAAAGACCAGTGTGAAATCACTTGATCAGAAAG
ACTTTTAAACGATGTCGTCTTCACCAGCACCACAAACGACTTctacaaca
aaatcaaaattcttgCATATGAAACTTTCATCATCCATCGAACGCAATTT
CTATTGGATAATATGGCTAACATCAATCATCTATCCTTTCTATCACTCAC
ACACAACCTCCATGAAGTACTTCGACCAAATCAAAGACGACTTGACGCCA
TCATGGTTCGGTCTCCATAAAGATGTTTCAGATTACGAATGGACATTTTG
GCGATCGATGGCGTTCCTCCTAGCAGCATTATTCTCAATAAATTCAGCCA
TAGTATTTCTGGTTAAACGTTTTATCCCAGCAGAAAGCCAGCACCTGCTT
ATATTATTATCAACATTAATTCTCCAAGGAGCTGTCATATCCATAAAAGG
ACTATTAGTGGTTCTATTGTTCATCACACTCAGTTACTATTTGCTTGACC
GTACCAAAAGGATCAGCACGATTTGGATTTCCTCGATCATTTTATTATAC
ATTATAAACAACCATGATTGGAAAACCAAGCTTTTTGAATACATGAGAAT
CCATAAAGATTCATACGATCTGGTGAAATTAGTTCTCATGATGTGCATTT
TAAGAATTATTTCGTTCTCGAATTTCTATCTACGATCGAAAGACCGGCAA
CATGATCTGGACCTTCCAAAGCTAATCACCTTTTGTCTATACATCCCTGT
ATGTTACAATGGACCTATAATCAATTTCGATACGTTTTACAAAGATGTAT
ACCAGACTGCACGACAATATTCAATCACAGAAATCACCAAAGATGTAGTA
TACACACTGGCAAACATCTTCGCATTGgaaatcttttttcacttcATTTA
CGCCAATACCTTATGTGTATACCATGATATTCTCCAAGAGATGACAGTCT
TTGATGCAATATCCCTTTTCTGGATACATCTCCACATTTTCAATATCAAA
TATTTCATCTTTTACAGATTCTCTGGTATATTTGCCAAGGTTGACGGAGT
TGAACCACCTGGACCACCGAAATGTATTGCCTCCTTATACACCTTTGTGG
ATATGTGGAGATATTTTGATAAAGGCCTAaacacatttttatttcaaaac
atttataTACCGTTGGGTGGTTCTGCCCAAGGTTTTGGTAAACAAACTCT
GGCCTCTTGTCTATGTTTCAGCTTCGTAGGTTATTGGCACGGAGCTGATA
AATCATTAATGTTCTGGGCCCTCACAAACTGGCTTGGAATCGTTATAGAG
TCTCTTGGGACAcgaataatcaaaacaaacatttacAGAAACTCTATAAA
CAGATTCGGGTGTTTGGCGCACCGACGATTGTGTGCACTGGGTGGTGCTT
TTTCAGTGTTCACTTTAATTTTTNTAGAAACACTATAAACAGATTTGGGT
GTTTGGCTCACCGACGATTGTGTGCACTGGGCGGCGCTTTTTCAGTGTTC
ACTTTAATTTTTACTAATATGGTCTTTTTGGTTGGTCATGACTCTGCAGT
TATTTTGTTATATAGGGTTTTCTCTGTTTGGCATTGCCCTCTGATTTGTT
TATTTGTATTTTACTGTGGAAATAATTGTAGTATTGATGCTAGTTATAct
taaattcatgatattcatgacgtaatgttttctacggaaatgcCCCGGTT
TTAGCCAATAGTGGCAAACTTAAATTAGACAAACGTTGTATAAATttacc
actactggcaaaaaccggggtctttccgtggaaaacattacgtcatgaat
agcATGAATATCTTTTTCTCAGTGCCCGGAAAAGGCACCTCCCTAATATT
TGAAGCTCTAATAAGCGATAAAACTCTTTATAACTTTAGGAGGGCTAACT
TTCTTCTACTTCACTTTCAATGGGGATGAGATTGCTATCAAAATGTTCAA
TGGGAGTTCACTTTCAGGGAGTTTACAAATTTGGGCGATTTTCAACTAAA
TTTCTCAGTGGGGGTATGCTTCATCGGGTTTGTAAGCGAGAATGCATTTA
GGATTATATATATTCATAATTATCAGGACAAAAGAGATTAGAGACAAATA
AAACAACATACTGtataattataattataattataattttcatcgcaacc
tttttagaatttcaatGTGTGCTGACAGGATTTAGTATGAGCTGTTGATG
CACCCTTTTACTTTGCAGTAATCCG Run BLAST on NCBI protein sequence of TCONS_00073011-protein >TCONS_00073011-protein ID=TCONS_00073011-protein|Name=TCONS_00073011-protein|organism=Clytia hemisphaerica|type=polypeptide|length=458bp
MSSSPAPQTTSTTKSKFLHMKLSSSIERNFYWIIWLTSIIYPFYHSHTTS
MKYFDQIKDDLTPSWFGLHKDVSDYEWTFWRSMAFLLAALFSINSAIVFL
VKRFIPAESQHLLILLSTLILQGAVISIKGLLVVLLFITLSYYLLDRTKR
ISTIWISSIILLYIINNHDWKTKLFEYMRIHKDSYDLVKLVLMMCILRII
SFSNFYLRSKDRQHDLDLPKLITFCLYIPVCYNGPIINFDTFYKDVYQTA
RQYSITEITKDVVYTLANIFALEIFFHFIYANTLCVYHDILQEMTVFDAI
SLFWIHLHIFNIKYFIFYRFSGIFAKVDGVEPPGPPKCIASLYTFVDMWR
YFDKGLNTFLFQNIYIPLGGSAQGFGKQTLASCLCFSFVGYWHGADKSLM
FWALTNWLGIVIESLGTRIIKTNIYRNSINRFGCLAHRRLCALGGAFSVF
TLIFXETL Run BLAST on NCBI transcript from alignment at scaffold_86:826455..829033- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073011 ID=TCONS_00073011|Name=TCONS_00073011|organism=Clytia hemisphaerica|type=transcript|length=2579bp|location=Sequence derived from alignment at scaffold_86:826455..829033- (Clytia hemisphaerica)
TAACGAGAAAACGCTATTAAGTAGCATATTACTGATAACACAGATTTTCA
TTGATGGTTAAAAAAGAATTTTGATGTGGCATTTTTGGAACAGGGCTTAA
GCGAATGGATAACGGAATAAAGAAGATATATTTTATTTGGGACAGAAAAG
AATGGTTTCATAGCTTTTAAAGACCAGGTAAGAATATTGTTTTACTTTTT
GCTTCCCAATGAAGCCCTGTCAACTAAAGTATAACACACACTGTTGATGG
TTACCTACTGCTAACAACGTTGGGGTTTATAAACATCTAGGTAGACCCAG
GCGGAAGAAGCAGAAACATCAAAACTAAGTTAACAGCATCCATATCCAGG
TTAGAAATCTAAGAAATCTTCTTACTTTCAGTGTGAAATCACTTGATCAG
AAAGACTTTTAAACGATGTCGTCTTCACCAGCACCACAAACGACTTCTAC
AACAAAATCAAAATTCTTGCATATGAAACTTTCATCATCCATCGAACGCA
ATTTCTATTGGATAATATGGCTAACATCAATCATCTATCCTTTCTATCAC
TCACACACAACCTCCATGAAGTACTTCGACCAAATCAAAGACGACTTGAC
GCCATCATGGTTCGGTCTCCATAAAGATGTTTCAGATTACGAATGGACAT
TTTGGCGATCGATGGCGTTCCTCCTAGCAGCATTATTCTCAATAAATTCA
GCCATAGTATTTCTGGTTAAACGTTTTATCCCAGCAGAAAGCCAGCACCT
GCTTATATTATTATCAACATTAATTCTCCAAGGAGCTGTCATATCCATAA
AAGGACTATTAGTGGTTCTATTGTTCATCACACTCAGTTACTATTTGCTT
GACCGTACCAAAAGGATCAGCACGATTTGGATTTCCTCGATCATTTTATT
ATACATTATAAACAACCATGATTGGAAAACCAAGCTTTTTGAATACATGA
GAATCCATAAAGATTCATACGATCTGGTGAAATTAGTTCTCATGATGTGC
ATTTTAAGAATTATTTCGTTCTCGAATTTCTATCTACGATCGAAAGACCG
GCAACATGATCTGGACCTTCCAAAGCTAATCACCTTTTGTCTATACATCC
CTGTATGTTACAATGGACCTATAATCAATTTCGATACGTTTTACAAAGAT
GTATACCAGACTGCACGACAATATTCAATCACAGAAATCACCAAAGATGT
AGTATACACACTGGCAAACATCTTCGCATTGGAAATCTTTTTTCACTTCA
TTTACGCCAATACCTTATGTGTATACCATGATATTCTCCAAGAGATGACA
GTCTTTGATGCAATATCCCTTTTCTGGATACATCTCCACATTTTCAATAT
CAAATATTTCATCTTTTACAGATTCTCTGGTATATTTGCCAAGGTTGACG
GAGTTGAACCACCTGGACCACCGAAATGTATTGCCTCCTTATACACCTTT
GTGGATATGTGGAGATATTTTGATAAAGGCCTAAACACATTTTTATTTCA
AAACATTTATATACCGTTGGGTGGTTCTGCCCAAGGTTTTGGTAAACAAA
CTCTGGCCTCTTGTCTATGTTTCAGCTTCGTAGGTTATTGGCACGGAGCT
GATAAATCATTAATGTTCTGGGCCCTCACAAACTGGCTTGGAATCGTTAT
AGAGTCTCTTGGGACACGAATAATCAAAACAAACATTTACAGAAACTCTA
TAAACAGATTCGGGTGTTTGGCGCACCGACGATTGTGTGCACTGGGTGGT
GCTTTTTCAGTGTTCACTTTAATTTTTNTAGAAACACTATAAACAGATTT
GGGTGTTTGGCTCACCGACGATTGTGTGCACTGGGCGGCGCTTTTTCAGT
GTTCACTTTAATTTTTACTAATATGGTCTTTTTGGTTGGTCATGACTCTG
CAGTTATTTTGTTATATAGGGTTTTCTCTGTTTGGCATTGCCCTCTGATT
TGTTTATTTGTATTTTACTGTGGAAATAATTGTAGTATTGATGCTAGTTA
TACTTAAATTCATGATATTCATGACGTAATGTTTTCTACGGAAATGCCCC
GGTTTTAGCCAATAGTGGCAAACTTAAATTAGACAAACGTTGTATAAATT
TACCACTACTGGCAAAAACCGGGGTCTTTCCGTGGAAAACATTACGTCAT
GAATAGCATGAATATCTTTTTCTCAGTGCCCGGAAAAGGCACCTCCCTAA
TATTTGAAGCTCTAATAAGCGATAAAACTCTTTATAACTTTAGGAGGGCT
AACTTTCTTCTACTTCACTTTCAATGGGGATGAGATTGCTATCAAAATGT
TCAATGGGAGTTCACTTTCAGGGAGTTTACAAATTTGGGCGATTTTCAAC
TAAATTTCTCAGTGGGGGTATGCTTCATCGGGTTTGTAAGCGAGAATGCA
TTTAGGATTATATATATTCATAATTATCAGGACAAAAGAGATTAGAGACA
AATAAAACAACATACTGTATAATTATAATTATAATTATAATTTTCATCGC
AACCTTTTTAGAATTTCAATGTGTGCTGACAGGATTTAGTATGAGCTGTT
GATGCACCCTTTTACTTTGCAGTAATCCG Coding sequence (CDS) from alignment at scaffold_86:826455..829033- >TCONS_00073011 ID=TCONS_00073011|Name=TCONS_00073011|organism=Clytia hemisphaerica|type=CDS|length=1377bp|location=Sequence derived from alignment at scaffold_86:826455..829033- (Clytia hemisphaerica)
ATGTCGTCTTCACCAGCACCACAAACGACTTCTACAACAAAATCAAAATT
CTTGCATATGAAACTTTCATCATCCATCGAACGCAATTTCTATTGGATAA
TATGGCTAACATCAATCATCTATCCTTTCTATCACTCACACACAACCTCC
ATGAAGTACTTCGACCAAATCAAAGACGACTTGACGCCATCATGGTTCGG
TCTCCATAAAGATGTTTCAGATTACGAATGGACATTTTGGCGATCGATGG
CGTTCCTCCTAGCAGCATTATTCTCAATAAATTCAGCCATAGTATTTCTG
GTTAAACGTTTTATCCCAGCAGAAAGCCAGCACCTGCTTATATTATTATC
AACATTAATTCTCCAAGGAGCTGTCATATCCATAAAAGGACTATTAGTGG
TTCTATTGTTCATCACACTCAGTTACTATTTGCTTGACCGTACCAAAAGG
ATCAGCACGATTTGGATTTCCTCGATCATTTTATTATACATTATAAACAA
CCATGATTGGAAAACCAAGCTTTTTGAATACATGAGAATCCATAAAGATT
CATACGATCTGGTGAAATTAGTTCTCATGATGTGCATTTTAAGAATTATT
TCGTTCTCGAATTTCTATCTACGATCGAAAGACCGGCAACATGATCTGGA
CCTTCCAAAGCTAATCACCTTTTGTCTATACATCCCTGTATGTTACAATG
GACCTATAATCAATTTCGATACGTTTTACAAAGATGTATACCAGACTGCA
CGACAATATTCAATCACAGAAATCACCAAAGATGTAGTATACACACTGGC
AAACATCTTCGCATTGGAAATCTTTTTTCACTTCATTTACGCCAATACCT
TATGTGTATACCATGATATTCTCCAAGAGATGACAGTCTTTGATGCAATA
TCCCTTTTCTGGATACATCTCCACATTTTCAATATCAAATATTTCATCTT
TTACAGATTCTCTGGTATATTTGCCAAGGTTGACGGAGTTGAACCACCTG
GACCACCGAAATGTATTGCCTCCTTATACACCTTTGTGGATATGTGGAGA
TATTTTGATAAAGGCCTAAACACATTTTTATTTCAAAACATTTATATACC
GTTGGGTGGTTCTGCCCAAGGTTTTGGTAAACAAACTCTGGCCTCTTGTC
TATGTTTCAGCTTCGTAGGTTATTGGCACGGAGCTGATAAATCATTAATG
TTCTGGGCCCTCACAAACTGGCTTGGAATCGTTATAGAGTCTCTTGGGAC
ACGAATAATCAAAACAAACATTTACAGAAACTCTATAAACAGATTCGGGT
GTTTGGCGCACCGACGATTGTGTGCACTGGGTGGTGCTTTTTCAGTGTTC
ACTTTAATTTTTNTAGAAACACTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073011-exon-scaffold_86-1575043694:828857..829033 | TCONS_00073011-exon-scaffold_86-1575043694:828857..829033 | Clytia hemisphaerica | exon |
| TCONS_00073011-exon-scaffold_86-1575043694:826455..828652 | TCONS_00073011-exon-scaffold_86-1575043694:826455..828652 | Clytia hemisphaerica | exon |
| TCONS_00073011-exon-scaffold_86-1510915933:828857..829033 | TCONS_00073011-exon-scaffold_86-1510915933:828857..829033 | Clytia hemisphaerica | exon |
| TCONS_00073011-exon-scaffold_86-1510915933:826455..828652 | TCONS_00073011-exon-scaffold_86-1510915933:826455..828652 | Clytia hemisphaerica | exon |
| TCONS_00073011-exon-scaffold_86-1491911889:828857..829033 | TCONS_00073011-exon-scaffold_86-1491911889:828857..829033 | Clytia hemisphaerica | exon |
| TCONS_00073011-exon-scaffold_86-1491911889:826455..828652 | TCONS_00073011-exon-scaffold_86-1491911889:826455..828652 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_86 | supercontig | scaffold_86:826455..829033 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR004299 | MBOAT_fam |
Blast
BLAST of TCONS_00073011 vs. Swiss-Prot (Human)
Match: HHAT (Protein-cysteine N-palmitoyltransferase HHAT OS=Homo sapiens GN=HHAT PE=1 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 5.836e-40 Identity = 109/424 (25.71%), Postives = 203/424 (47.88%), Query Frame = 2
Query: 332 YPFYHSHTTSMKYFDQIKDDL---TPSWFG-LHKDVSDYEWTFWRSMAFLLAALFSINSAIVFLVKRFIPAESQHXXXXXXXXXXQGAVISIKGLLVVLLFITLSYYLLDRTKRXXXXXXXXXXXXXXXNNHDWKTKLFEYMRIHKDSYDLVKLVLMMCILRIISFSN--FYLRSKDRQHDLDLPKLITFCLYIPVCYNGPIINFDTFYKDVYQTAR---QYSITEITKDVVYTLANIFALEIFFHFIYANTLCVYHDILQEMTVFDAISLFWIHLHIFNIKYFIFYRFSGIFAKVDGVEPPGPPKCIASLYTFVDMWRYFDKGLNTFLFQNIYIPLGGSAQGFGKQTLASCLCFSFVGYWHGADKSLMFWALTNWLGIVIESLGTRIIKTNIYRNSINR-FGCLAHRRLCALGGAFSVFTLIF 1573
Y FY + S ++ +++ + T + FG L KD +D+EW+FW + +V + + + + +++L + V+ G+ +VLL T+S+ + ++ T S ++L + + K Y ++ Y L++ L + L SFS + + P ++ + Y PV +NGPI++F F K + Q + S+ + + L + E+ H +Y + + +L+ ++ + L + F +KY + + + ++DG+ PP P+C++++++F MWRYFD GL+ FL + +YIP+GGS G ++ + F+FV YWHG L WA NWLG+ +E+ R+++T ++S+ R F A RR A + S LI
Sbjct: 20 YSFYEVYKVSREHEEELDQEFELETDTLFGGLKKDATDFEWSFWMEWGKQWLVWLLLGHMVVSQMATLLARKHRPWILMLYGMWACWCVLGTPGVAMVLLHTTISFCVAQFRSQLLTWLCSLLLLSTLRLQGVEEVKRRWYKT--ENEYYLLQFTLTVRCLYYTSFSLELCWQQLPAASTSYSFPWMLAYVFYYPVLHNGPILSFSEFIKQMQQQEHDSLKASLCVLALGLGRLLCWWWLAELMAHLMYMHAIYSSIPLLETVSCWTLGGLALAQVLFFYVKYLVLFGVPALLMRLDGLTPPALPRCVSTMFSFTGMWRYFDVGLHNFLIRYVYIPVGGSQHGLLGTLFSTAMTFAFVSYWHGGYDYLWCWAALNWLGVTVENGVRRLVETPCIQDSLARYFSPQARRRFHAALASCSTSMLIL 441
The following BLAST results are available for this feature:
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