TCONS_00072534 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072534
Unique NameTCONS_00072534
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length577

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072534 ID=TCONS_00072534|Name=TCONS_00072534|organism=Clytia hemisphaerica|type=transcript|length=577bp
gtaaaagataaaagaaaaacaactaaaaaatgCCAGAAGAGTCCAATTTG
TTGCAAGAAGTCGATCTTTTAATCAAAGATGTCCAGTTCGCTCTCAACGT
CTTCAAATTATCGGACATTCTTCCCCAGTCCCCAAACGAAGTTTatgtga
acattgaaacaaagGAAACAGAGAAGTTCACCATTCAATTAACATCACAA
GGTTTTAAAGTGGTTGCTCATCAGTTCGACCAGAATGATGAGAATGGTTC
TGCAAAATACCCAACACCTTTTGAAACCATTAATGCATTGCTGGAGCATA
TCAGTGCAAGTTTCGTGGAGCTGTTTGGTAATGCATTGAAGCAGAAGCTA
GAGGCTTTACAAAGTGCTCAAGATGCTGAAAATGAGTAAACTAGAAATTT
ATTAGTATTCATATTTTACATTTAGCAGTTTTATAAGATTAtaatattta
gatttttatCCTCACACACATTGTACACGCATTATTGACCAGCttttttt
agtatatttataGGTTACCACCGTTAAACTTGGGGACCATGGATTCGATA
TTTAACGATTCAATGAAAACATAAAAT
Run BLAST on NCBI

protein sequence of TCONS_00072534-protein

>TCONS_00072534-protein ID=TCONS_00072534-protein|Name=TCONS_00072534-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
MPEESNLLQEVDLLIKDVQFALNVFKLSDILPQSPNEVYVNIETKETEKF
TIQLTSQGFKVVAHQFDQNDENGSAKYPTPFETINALLEHISASFVELFG
NALKQKLEALQSAQDAENE
Run BLAST on NCBI

transcript from alignment at scaffold_79:28288..28864

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072534 ID=TCONS_00072534|Name=TCONS_00072534|organism=Clytia hemisphaerica|type=transcript|length=577bp|location=Sequence derived from alignment at scaffold_79:28288..28864 (Clytia hemisphaerica)
ATTTTATGTTTTCATTGAATCGTTAAATATCGAATCCATGGTCCCCAAGT
TTAACGGTGGTAACCtataaatatactaaaaaaaGCTGGTCAATAATGCG
TGTACAATGTGTGTGAGGataaaaatctaaatattaTAATCTTATAAAAC
TGCTAAATGTAAAATATGAATACTAATAAATTTCTAGTTTACTCATTTTC
AGCATCTTGAGCACTTTGTAAAGCCTCTAGCTTCTGCTTCAATGCATTAC
CAAACAGCTCCACGAAACTTGCACTGATATGCTCCAGCAATGCATTAATG
GTTTCAAAAGGTGTTGGGTATTTTGCAGAACCATTCTCATCATTCTGGTC
GAACTGATGAGCAACCACTTTAAAACCTTGTGATGTTAATTGAATGGTGA
ACTTCTCTGTTTCctttgtttcaatgttcacatAAACTTCGTTTGGGGAC
TGGGGAAGAATGTCCGATAATTTGAAGACGTTGAGAGCGAACTGGACATC
TTTGATTAAAAGATCGACTTCTTGCAACAAATTGGACTCTTCTGGcattt
tttagttgtttttcttttatcttttac

Coding sequence (CDS) from alignment at scaffold_79:28288..28864

>TCONS_00072534 ID=TCONS_00072534|Name=TCONS_00072534|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at scaffold_79:28288..28864 (Clytia hemisphaerica)
TTACTCATTTTCAGCATCTTGAGCACTTTGTAAAGCCTCTAGCTTCTGCT
TCAATGCATTACCAAACAGCTCCACGAAACTTGCACTGATATGCTCCAGC
AATGCATTAATGGTTTCAAAAGGTGTTGGGTATTTTGCAGAACCATTCTC
ATCATTCTGGTCGAACTGATGAGCAACCACTTTAAAACCTTGTGATGTTA
ATTGAATGGTGAACTTCTCTGTTTCctttgtttcaatgttcacatAAACT
TCGTTTGGGGACTGGGGAAGAATGTCCGATAATTTGAAGACGTTGAGAGC
GAACTGGACATCTTTGATTAAAAGATCGACTTCTTGCAACAAATTGGACT
CTTCTGGcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045013XLOC_045013Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072534-proteinTCONS_00072534-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072534-exon-scaffold_79-1491911889:28288..28864TCONS_00072534-exon-scaffold_79-1491911889:28288..28864Clytia hemisphaericaexon
TCONS_00072534-exon-scaffold_79-1510915933:28288..28864TCONS_00072534-exon-scaffold_79-1510915933:28288..28864Clytia hemisphaericaexon
TCONS_00072534-exon-scaffold_79-1575043694:28288..28864TCONS_00072534-exon-scaffold_79-1575043694:28288..28864Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_79supercontigscaffold_79:28288..28864 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.0754	12.8796	5.67616	4.16492	3.38026	2.77386	6.81705	6.49807	11.6986	8.45285	6.73945	9.43835	7.18113	7.52426	9.25157	13.747	5.06606	5.41509	1.94717	2.78826	1.49139	2.72792	8.73252	8.14012	1.55262	1.57043	2.24728	0.42324	4.60118	5.56004
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023231GSKIP_dom
IPR007967DUF727
Blast
[Close]
BLAST of TCONS_00072534 vs. Swiss-Prot (Human)
Match: GSKIP (GSK3-beta interaction protein OS=Homo sapiens GN=GSKIP PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.290e-18
Identity = 42/103 (40.78%), Postives = 67/103 (65.05%), Query Frame = 3 
Query:   57 EVDLLIKDVQFALNVFKLSDILPQSPNEVYVNIETKETEKFTIQLTSQGFKVVAHQFDQNDENGSAKYPTPF-ETINALLEHISASFVELFGNALKQKLEALQ 362
            E + ++ DV FA+N   +S  L  + +  Y+N+ETKE  ++ ++LT  G KVV + FDQ D++      TP+ ET+ +LL+ +S ++ E FGNAL Q+LEAL+
Sbjct:   36 EAEAVVNDVLFAVNNMFVSKSLRCADDVAYINVETKERNRYCLELTEAGLKVVGYAFDQVDDH----LQTPYHETVYSLLDTLSPAYREAFGNALLQRLEALK 134
The following BLAST results are available for this feature:
BLAST of TCONS_00072534 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GSKIP1.290e-1840.78GSK3-beta interaction protein OS=Homo sapiens GN=G... [more]
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