Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072452 ID=TCONS_00072452|Name=TCONS_00072452|organism=Clytia hemisphaerica|type=transcript|length=1171bpRun BLAST on NCBI protein sequence of TCONS_00072452-protein >TCONS_00072452-protein ID=TCONS_00072452-protein|Name=TCONS_00072452-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp MMKILLLLVVFSGVVFSEWIKEMENQELFQGDIVLDPDEDERGLNKNTFARun BLAST on NCBI transcript from alignment at scaffold_77:529960..536817- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072452 ID=TCONS_00072452|Name=TCONS_00072452|organism=Clytia hemisphaerica|type=transcript|length=6858bp|location=Sequence derived from alignment at scaffold_77:529960..536817- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_77:529960..536817- >TCONS_00072452 ID=TCONS_00072452|Name=TCONS_00072452|organism=Clytia hemisphaerica|type=CDS|length=8154bp|location=Sequence derived from alignment at scaffold_77:529960..536817- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072452 vs. Swiss-Prot (Human)
Match: MEP1A (Meprin A subunit alpha OS=Homo sapiens GN=MEP1A PE=1 SV=2) HSP 1 Score: 132.494 bits (332), Expect = 2.861e-33 Identity = 82/219 (37.44%), Postives = 118/219 (53.88%), Query Frame = 3 Query: 210 ELFQGDIVLDPDEDERGLNKNTFASIKGGRWPNAR----IPYVXXXXXXXXXXXXXXXXXXXYHSYTCIRFHRRTNERSYIKFYKGRGCSSPVGYRYGRVNSVSLASGCWTKGVVIHEIGHSIGLYHEQSRPDRDNHVRIQTQNIISGMAYNFNKQRSSNIDSKGTPYDFDSIMHYGPYAFARSRGLITIKTLDPNYQNRIGNRGGFSTIDKRQINLMY 854 +LFQGDI+L S G R PN R IPY++ ++ + AI A + +C+ F E SYI F + GC S VG ++ N +S+ GC K ++ HEI H++G YHEQSR DRD++V I I+SG +NF+ S I TPYD++S+MHY P++F ++ + TI P + + IG R FS ID ++N MY Sbjct: 53 DLFQGDILLQ-------------KSRNGLRDPNTRWTFPIPYILADNLGLNAKGAILYAFEMFRLKSCVDFKPYEGESSYIIFQQFDGCWSEVGDQHVGQN-ISIGQGCAYKAIIEHEILHALGFYHEQSRTDRDDYVNIWWDQILSGYQHNFDTYDDSLITDLNTPYDYESLMHYQPFSFNKNASVPTITAKIPEFNSIIGQRLDFSAIDLERLNRMY 257 The following BLAST results are available for this feature:
BLAST of TCONS_00072452 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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