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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072140 ID=TCONS_00072140|Name=TCONS_00072140|organism=Clytia hemisphaerica|type=transcript|length=1480bp
TGGCATGAGAAAGGGCATGGCCCTTTTATTGTATAATAGAGTGTTGCTTT
CATTTTACATGACAGCTgactaaaggaagaaaaaacaaCCATGCGTATAA
AATCTagagaaatttatcaaaatttcattcaGATCAGATCAACACATTGA
CAGAGATAAAACTTTGAAAGAGAGGACtagaaatatttatattttgtcAT
GCTGAGATCAGTGTTGAGTTTAACTATCATCATTGCTGCAGTGTATGCAT
GCAGTGACGAGAAAAGCAGCTGtcctggatggaaaattttatgTAAAACA
AATCAAGCTGTCCGAAACCTTTGTAAAAAGACTTGTGGTATATGCaaaga
tgaaaagaaagaaaaagaagaaaagtgtGGAATTTCAAAAGTTCCAAATA
TAGAGGCTGTAACAAGTGCTAATGCCCCACCAGGAGCCTGGCCATGGGTT
GTATCTCTGCAGACCACATGGGGGTATCAATTTTGTGGTGGATCAATCGT
GTCTCCAAACTTGATTATGACAGCTGCTACTTGTCTAATAACTCGCCAAG
ACACGCCAGCTAAAATTATGGTTGTTGCAGGGGCACATGACATCAAAGAA
AAATCAGAATATGAACAAAAGATTATCGCAAAGAGTATTATTCGTCACCC
AGCTTATGATTATGATAAACGTGGAAGTCACAATATTGCTTTGATTGAGC
TATCAGAGCCATTGAAAATGAATGATCACGTTATGAATGTATGCATGCCA
AAACAATATACTCGGCCAAAAGTTGGAGACACTTGCATCTATTTAGGCTG
GGGAGTACCACATCAAACATCAACAACCAAACTTCAACAGGTCCCACTTT
CCATTTTAAAGAATAGAAGATATTTGGGCTATCAATACATTGATGCAAAA
TACCAACAGTCAGACAAGCCCAGTATTGCTTATGGTAACCCTTTGGTGTG
TCAACGCGCTGATAAAACATGGCAAATTGATGGGGTATCAAACTTTAGGA
ATTCCTATAGTCAATATATCGCATTTTCCGAAGTAAATACTATTTTGAAA
TGGCTGGAGGAGAAGGAGGATAAGTATTTGTAACTAAAATATTACTTCCA
AACAAGAGATATTTATAACCTTGCTTCAAGCTCACaatatcatgaattag
aaagaaaaaaaaagaatgatctAATTCTTAATAAGAAGCTAAAATCTATA
TTatataaactttttatttttacttactACTGATCTATAACAAAACTTTT
TGTATAGCAAGCATATAATCTAttaaggaaaataaattttttggctAATT
AAATGCAGATTTAACGCCTATTTGCTTCAACGATTCTCTAAGGTAAAAAG
TCTTTAAATGTTAGCACAATACTTCAAATGGtgataaaattatgaaattt
ttataaacagatcagctaaacaaaagaaattatcaagattatgtcttttc
gttctttaaaaatttgaaaatgagtactcg Run BLAST on NCBI protein sequence of TCONS_00072140-protein >TCONS_00072140-protein ID=TCONS_00072140-protein|Name=TCONS_00072140-protein|organism=Clytia hemisphaerica|type=polypeptide|length=294bp
MLRSVLSLTIIIAAVYACSDEKSSCPGWKILCKTNQAVRNLCKKTCGICK
DEKKEKEEKCGISKVPNIEAVTSANAPPGAWPWVVSLQTTWGYQFCGGSI
VSPNLIMTAATCLITRQDTPAKIMVVAGAHDIKEKSEYEQKIIAKSIIRH
PAYDYDKRGSHNIALIELSEPLKMNDHVMNVCMPKQYTRPKVGDTCIYLG
WGVPHQTSTTKLQQVPLSILKNRRYLGYQYIDAKYQQSDKPSIAYGNPLV
CQRADKTWQIDGVSNFRNSYSQYIAFSEVNTILKWLEEKEDKYL Run BLAST on NCBI transcript from alignment at scaffold_71:1125995..1130764+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072140 ID=TCONS_00072140|Name=TCONS_00072140|organism=Clytia hemisphaerica|type=transcript|length=4770bp|location=Sequence derived from alignment at scaffold_71:1125995..1130764+ (Clytia hemisphaerica)
TGGCATGAGAAAGGGCATGGCCCTTTTATTGTATAATAGAGTGTTGCTTT
CATTTTACATGACAGCTgactaaaggaagaaaaaacaaCCATGCGTATAA
AATCTagagaaatttatcaaaatttcattcaGATCAGATCAACACATTGA
CAGAGATAAAACTTTGAAAGAGAGGACtagaaatatttatattttgtcAT
GCTGAGATCAGTGTTGAGTTTAACTATCATCATTGCTGCAGTGTGTAAGT
TCAAAGTCTTACTTTGGCAAATCTTTTCAATCTTTCTATATTAATTGAAC
AGTAAGAAAGAaattattcttgatattttgtgATGTAAAAGAAACATCCA
AACAACATTAGGCATTTGATACAGTCGATTATAGTTTAAAACTTGTGGCA
AACGTCCAGTGTacaattcctattgaaattctAGATGCATGCAGTGACGA
GAAAAGCAGCTGtcctggatggaaaattttatgTAAAACAAATCAAGCTG
TCCGAAACCTTTGTAAAAAGACTTGTGGTATATGCaaagatgaaaagaaa
gaaaaagaagaaaagtgtGGAATTTCAAAAGTTCCAAATATAGAGGCTGT
AACAAGTGCTAATGCCCCACCAGGAGCCTGGCCATGGGTTGTATCTCTGC
AGACCACATGGGGGTATCAATTTTGTGGTGGATCAATCGTGTCTCCAAAC
TTGGtagattgttttttattgaattaATAATGTAGAAAATGACTACTAAT
TTGGCACTATAAATATTTATAGTTCCTTATTAATTTAGTTGAGCTTCTAG
ATTTTATCAATTATAGCTTCATATTTTGATGAGATTTTgctaaagtacct
gaaaatcagaTCGGtctttaacctttccagcgcgcaactttttaaatttt
cacgctgtcagcgcgcaacattttttcagaaaatagacatgctcagttat
ttgatcataactcaagaactaggaATCTTTAGAACAAAAGTAAGTATTCC
TGAAAAGCTACTTAAATTCTACAACTTTTAGACCAAGtaccaatccaaat
aaaatattccaacaaaaatggtagcatcacgtaaaccacagttttttttc
acgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNATGCTAAATGTCAtcataataattccatgtgGCTGTTATG
TGGTTCCTGCCATCATTTTAATCCATATAAGCTGTAATCAGGACATCGTT
ATGAGCCAAGAATTTCGGGGATCGATCGACCGTTGCTGGTGGAGCGGAAG
AAGTATGCAATTCAACATAACTCCaggcttttcaaattctttggtgctcc
tttgaaataaatgaggtttagaaaacacttttgcattgaatttgTCCACT
TTCCATGCTCCAACctgaataaaaagtaaaaagtactgTAAGTTTGGGTC
GACTCCGATGGTTTGTCgagaaaagtggtcaaaatgacaaataaatggAA
TTTGTATGctagaaacaaaacacaaaatataagatatacttactggatgt
tttgccattataaaaacaatgtttccatgaagaaaagtggcctaaaccag
tcaaaaaatccaagaactttagcagtaagtttgaaaaacccaTTTCTTGG
TCGCCATCTTGATTCAGTGTTTTTCTCTACCTTTTCTCCGAAATCTGCTG
CCTCACCACGTGATCAAAATATTACATCaccatatatcaaaagaaagctt
agaacctctactttccgtttctctttacttctacggctagcaaagaagcc
aatgggagaaatatagcttagaagatcactatgtcaaaaagacgactata
ctcgtccggcggaacgtatgctcgacgactatactcgtccgccgggctga
aaaggttaaACAGTCTTTTAAAGGCTGGTACCAAATCAATCGAATTGGTT
GTATCCCAAAATTATGGTGCAGCCAAATAAATCAATCAGTGCTCAGAAAA
ACGTTTGATTGTTGAATAAACTTTTGGATAGTTAGtatattaaaaatttt
ccaaaaggtTGCTACGAGTCTGGTCAATTAAGCTACCATTTTAAAGCGTT
TTTActtgaaaacccaaaaatttgTTACTGTCGTTGACAAGAGACCGAAT
TATAATATTCTACCGACTCGTTTGAGCAATGAACCAGACTCTGTTGTTCC
CGATCTTTTAATCAATTAGTTTTCCTTAAAAGattgctttgaaagaaaat
ttgtttaacAGTCTAAATTCTTGATTTAACTGCTATTAAATTGCTCTTTA
TAAGGAACTTAGTTGcatagtggtatagtggtcatcaTCCCCGACTCTAG
CCTGGAAGGCCTTAGTTCGCTTTgcaagtgaatataccttcgcccgggtc
aacccataccatgtgaagggaattgggtaccattactctgaaACAAGAAT
GTGGGTAGATAAGACTGGCATTGTGACATGCTGTGGCACTTGGTTTGGCC
TTGCGTGAGCATCGCTCTCTCAGTGTCGTTCGAGTACCAATGTATACGTC
ATGGCTAACTGCGTCTGTCAAGTTGCAGTGCCTGTCAGCGCTGCGATTCC
TACTCCTTCAGAAGTAGAACCCATCTTGAATGATTCGGAGGGCATATATC
TATATTTCAGGTACTTAAAATCCCAATTATGGCAACAATATTGCACTaaa
tatgtgactccccaagcgatttaaagtacctgaaaatcggACCGGTCTTT
AGACAGTCTTTTAAGGACCGGTAAATGACCGGTAAAAATTTACTAAAAGG
CCACTACGAGTCTAGTTAATTTAGTTGCCGCTGCGAAGCGTCCGGTCCTA
GACCGGCCCCAGACCGGCCCCGATCGCCCAGTCGACATCCTTTTACAACA
ATTTTTTCATGTAATAGTTACTAAAAATCACTAACTAGCGGCCCGGACCG
GTCTAACGAACGACCCGGACCGGGCCACGAGCGTCTAGAAGCGGCCGGGA
CCATTAGAGATCACATTTCTAGAAGGTCTGGAGGCCGatgtaaaacaaaa
atttgaccgcTACTAGACCGCTCGTAATACCGGACCAAGACTGGTCTGAT
attcaggtactttaaatcgcttgggaAGTCACATATACTAATggtcaaat
atatttttccatttcaaagATTATGACAGCTGCTACTTGTCTAATAACTC
GCCAAGACACGCCAGCTAAAATTATGGTTGTTGCAGGGGCACATGACATC
AAAGAAAAATCAGAATATGAACAAAAGATTATCGCAAAGAGTATTATTCG
TCACCCAGCTTATGATTATGATAAACGTGGAAGTCACAATATTGCTTTGA
TTGAGCTATCAGAGCCATTGAAAATGAATGATCACGTTATGAATGTATGC
ATGCCAAAACAATATACTCGGCCAAAAGTTGGAGACACTTGCATCTATTT
AGGTTAGAATCTCAGAGCTTTTTTAATACTTTACAAACTTCCAACCAACA
TTGTAATCAGCGtattagaaagaaaattttaaatcattTCAATAAGATAA
TATTTTAACCAAATTCCAAGTTTTTTCGCTACACTTTGTGCAGTAAATAT
TATGTGTTGTGTTGTATTTTGTACTTTGATTTTTAGAAAGAGAGAAAGAA
AACACTTTGAAGTATAACTAACTTTATTGTTTTTAGGCTGGGGAGTACCA
CATCAAACATCAACAACCAAACTTCAACAGGTCCCACTTTCCATTTTAAA
GAATAGAAGATATTTGGGCTATCAATACATTGATGCAAAATACCAACAGT
CAGACAAGCCCAGTATTGCTTATGGTAACCCTTTGGTGTGTCAACGCGCT
GATAAAACATGGCAAATTGATGGGGTATCAAACTTTAGGAATTCCTATAG
TCAATATATCGCATTTTCCGAAGTAAATACTATTTTGAAATGGCTGGAGG
AGAAGGAGGATAAGTATTTGTAACTAAAATATTACTTCCAAACAAGAGAT
ATTTATAACCTTGCTTCAAGCTCACaatatcatgaattagaaagaaaaaa
aaagaatgatctAATTCTTAATAAGAAGCTAAAATCTATATTatataaac
tttttatttttacttactACTGATCTATAACAAAACTTTTTGTATAGCAA
GCATATAATCTAttaaggaaaataaattttttggctAATTAAATGCAGAT
TTAACGCCTATTTGCTTCAACGATTCTCTAAGGTAAAAAGTCTTTAAATG
TTAGCACAATACTTCAAATGGtgataaaattatgaaatttttataaacag
atcagctaaacaaaagaaattatcaagattatgtcttttcgttctttaaa
aatttgaaaatgagtactcg Coding sequence (CDS) from alignment at scaffold_71:1125995..1130764+ >TCONS_00072140 ID=TCONS_00072140|Name=TCONS_00072140|organism=Clytia hemisphaerica|type=CDS|length=3540bp|location=Sequence derived from alignment at scaffold_71:1125995..1130764+ (Clytia hemisphaerica)
ATGCTGAGATCAGTGTTGAGTTTAACTATCATCATTGCTGCAGTGTATGC
ATGCAGTGACGAGAAAAGCAGCTGtcctggatggaaaattttatgTAAAA
CAAATCAAGCTGTCCGAAACCTTTGTAAAAAGACTTGTGGTATATGCaaa
gatgaaaagaaagaaaaagaagaaaagtgtGGAATTTCAAAAGTTCCAAA
TATAGAGGCTGTAACAAGTGCTAATGCCCCACCAGGAGCCTGGCCATGGG
TTGTATCTCTGCAGACCACATGGGGGTATCAATTTTGTGGTGGATCAATC
GTGTCTCCAAACTTGATTATGACAGCTGCTACTTGTCTAATAACTCGCCA
AGACACGCCAGCTAAAATTATGGTTGTTGCAGGGGCACATGACATCAAAG
AAAAATCAGAATATGAACAAAAGATTATCGCAAAGAGTATTATTCGTCAC
CCAGCTTATGATTATGATAAACGTGGAAGTCACAATATTGCTTTGATTGA
GCTATCAGAGCCATTGAAAATGAATGATCACGTTATGAATGTATGCATGC
CAAAACAATATACTCGGCCAAAAGTTGGAGACACTTGCATCTATTTAGGC
TGGGGAGTACCACATCAAACATCAACAACCAAACTTCAACAGGTCCCACT
TTCCATTTTAAAGAATAGAAGATATTTGGGCTATCAATACATTGATGCAA
AATACCAACAGTCAGACAAGCCCAGTATTGCTTATGGTAACCCTTTGGTG
TGTCAACGCGCTGATAAAACATGGCAAATTGATGGGGTATCAAACTTTAG
GAATTCCTATAGTCAATATATCGCATTTTCCGAAGTAAATACTATTTTGA
AATGGCTGGAGGAGAAGGAGGATAAGTATTTGTAAATGCTGAGATCAGTG
TTGAGTTTAACTATCATCATTGCTGCAGTGTATGCATGCAGTGACGAGAA
AAGCAGCTGtcctggatggaaaattttatgTAAAACAAATCAAGCTGTCC
GAAACCTTTGTAAAAAGACTTGTGGTATATGCaaagatgaaaagaaagaa
aaagaagaaaagtgtGGAATTTCAAAAGTTCCAAATATAGAGGCTGTAAC
AAGTGCTAATGCCCCACCAGGAGCCTGGCCATGGGTTGTATCTCTGCAGA
CCACATGGGGGTATCAATTTTGTGGTGGATCAATCGTGTCTCCAAACTTG
ATTATGACAGCTGCTACTTGTCTAATAACTCGCCAAGACACGCCAGCTAA
AATTATGGTTGTTGCAGGGGCACATGACATCAAAGAAAAATCAGAATATG
AACAAAAGATTATCGCAAAGAGTATTATTCGTCACCCAGCTTATGATTAT
GATAAACGTGGAAGTCACAATATTGCTTTGATTGAGCTATCAGAGCCATT
GAAAATGAATGATCACGTTATGAATGTATGCATGCCAAAACAATATACTC
GGCCAAAAGTTGGAGACACTTGCATCTATTTAGGCTGGGGAGTACCACAT
CAAACATCAACAACCAAACTTCAACAGGTCCCACTTTCCATTTTAAAGAA
TAGAAGATATTTGGGCTATCAATACATTGATGCAAAATACCAACAGTCAG
ACAAGCCCAGTATTGCTTATGGTAACCCTTTGGTGTGTCAACGCGCTGAT
AAAACATGGCAAATTGATGGGGTATCAAACTTTAGGAATTCCTATAGTCA
ATATATCGCATTTTCCGAAGTAAATACTATTTTGAAATGGCTGGAGGAGA
AGGAGGATAAGTATTTGTAAATGCTGAGATCAGTGTTGAGTTTAACTATC
ATCATTGCTGCAGTGTATGCATGCAGTGACGAGAAAAGCAGCTGtcctgg
atggaaaattttatgTAAAACAAATCAAGCTGTCCGAAACCTTTGTAAAA
AGACTTGTGGTATATGCaaagatgaaaagaaagaaaaagaagaaaagtgt
GGAATTTCAAAAGTTCCAAATATAGAGGCTGTAACAAGTGCTAATGCCCC
ACCAGGAGCCTGGCCATGGGTTGTATCTCTGCAGACCACATGGGGGTATC
AATTTTGTGGTGGATCAATCGTGTCTCCAAACTTGATTATGACAGCTGCT
ACTTGTCTAATAACTCGCCAAGACACGCCAGCTAAAATTATGGTTGTTGC
AGGGGCACATGACATCAAAGAAAAATCAGAATATGAACAAAAGATTATCG
CAAAGAGTATTATTCGTCACCCAGCTTATGATTATGATAAACGTGGAAGT
CACAATATTGCTTTGATTGAGCTATCAGAGCCATTGAAAATGAATGATCA
CGTTATGAATGTATGCATGCCAAAACAATATACTCGGCCAAAAGTTGGAG
ACACTTGCATCTATTTAGGCTGGGGAGTACCACATCAAACATCAACAACC
AAACTTCAACAGGTCCCACTTTCCATTTTAAAGAATAGAAGATATTTGGG
CTATCAATACATTGATGCAAAATACCAACAGTCAGACAAGCCCAGTATTG
CTTATGGTAACCCTTTGGTGTGTCAACGCGCTGATAAAACATGGCAAATT
GATGGGGTATCAAACTTTAGGAATTCCTATAGTCAATATATCGCATTTTC
CGAAGTAAATACTATTTTGAAATGGCTGGAGGAGAAGGAGGATAAGTATT
TGTAAATGCTGAGATCAGTGTTGAGTTTAACTATCATCATTGCTGCAGTG
TATGCATGCAGTGACGAGAAAAGCAGCTGtcctggatggaaaattttatg
TAAAACAAATCAAGCTGTCCGAAACCTTTGTAAAAAGACTTGTGGTATAT
GCaaagatgaaaagaaagaaaaagaagaaaagtgtGGAATTTCAAAAGTT
CCAAATATAGAGGCTGTAACAAGTGCTAATGCCCCACCAGGAGCCTGGCC
ATGGGTTGTATCTCTGCAGACCACATGGGGGTATCAATTTTGTGGTGGAT
CAATCGTGTCTCCAAACTTGATTATGACAGCTGCTACTTGTCTAATAACT
CGCCAAGACACGCCAGCTAAAATTATGGTTGTTGCAGGGGCACATGACAT
CAAAGAAAAATCAGAATATGAACAAAAGATTATCGCAAAGAGTATTATTC
GTCACCCAGCTTATGATTATGATAAACGTGGAAGTCACAATATTGCTTTG
ATTGAGCTATCAGAGCCATTGAAAATGAATGATCACGTTATGAATGTATG
CATGCCAAAACAATATACTCGGCCAAAAGTTGGAGACACTTGCATCTATT
TAGGCTGGGGAGTACCACATCAAACATCAACAACCAAACTTCAACAGGTC
CCACTTTCCATTTTAAAGAATAGAAGATATTTGGGCTATCAATACATTGA
TGCAAAATACCAACAGTCAGACAAGCCCAGTATTGCTTATGGTAACCCTT
TGGTGTGTCAACGCGCTGATAAAACATGGCAAATTGATGGGGTATCAAAC
TTTAGGAATTCCTATAGTCAATATATCGCATTTTCCGAAGTAAATACTAT
TTTGAAATGGCTGGAGGAGAAGGAGGATAAGTATTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072140-exon-scaffold_71-1491911889:1125995..1126238 | TCONS_00072140-exon-scaffold_71-1491911889:1125995..1126238 | Clytia hemisphaerica | exon |
| TCONS_00072140-exon-scaffold_71-1510915933:1125995..1126238 | TCONS_00072140-exon-scaffold_71-1510915933:1125995..1126238 | Clytia hemisphaerica | exon |
| TCONS_00072140-exon-scaffold_71-1575043694:1125995..1126238 | TCONS_00072140-exon-scaffold_71-1575043694:1125995..1126238 | Clytia hemisphaerica | exon |
| TCONS_00072140-exon-scaffold_71-1491911889:1126429..1126697 | TCONS_00072140-exon-scaffold_71-1491911889:1126429..1126697 | Clytia hemisphaerica | exon |
| TCONS_00072140-exon-scaffold_71-1510915933:1126429..1126697 | TCONS_00072140-exon-scaffold_71-1510915933:1126429..1126697 | Clytia hemisphaerica | exon |
| TCONS_00072140-exon-scaffold_71-1575043694:1126429..1126697 | TCONS_00072140-exon-scaffold_71-1575043694:1126429..1126697 | Clytia hemisphaerica | exon |
| TCONS_00072140-exon-scaffold_71-1491911889:1129564..1129846 | TCONS_00072140-exon-scaffold_71-1491911889:1129564..1129846 | Clytia hemisphaerica | exon |
| TCONS_00072140-exon-scaffold_71-1510915933:1129564..1129846 | TCONS_00072140-exon-scaffold_71-1510915933:1129564..1129846 | Clytia hemisphaerica | exon |
| TCONS_00072140-exon-scaffold_71-1575043694:1129564..1129846 | TCONS_00072140-exon-scaffold_71-1575043694:1129564..1129846 | Clytia hemisphaerica | exon |
| TCONS_00072140-exon-scaffold_71-1491911889:1130081..1130764 | TCONS_00072140-exon-scaffold_71-1491911889:1130081..1130764 | Clytia hemisphaerica | exon |
| TCONS_00072140-exon-scaffold_71-1510915933:1130081..1130764 | TCONS_00072140-exon-scaffold_71-1510915933:1130081..1130764 | Clytia hemisphaerica | exon |
| TCONS_00072140-exon-scaffold_71-1575043694:1130081..1130764 | TCONS_00072140-exon-scaffold_71-1575043694:1130081..1130764 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_71 | supercontig | scaffold_71:1125995..1130764 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004252 | serine-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004252 |
serine-type endopeptidase activity |
Blast
BLAST of TCONS_00072140 vs. Swiss-Prot (Human)
Match: CTRB1 (Chymotrypsinogen B OS=Homo sapiens GN=CTRB1 PE=2 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 1.020e-22 Identity = 70/238 (29.41%), Postives = 112/238 (47.06%), Query Frame = 1
Query: 379 GISKVPNIEAVTSANAPPGAWPWVVSLQTTWGYQFCGGSIVSPNLIMTAATCLITRQDTPAKIMVVAGAHDIKEKSEYEQKIIAKSIIRHPAYDYDKRGSHNIALIELSEPLKMNDHVMNVCMPKQYTRPKVGDTCIYLGWGVPH---QTSTTKLQQVPLSILKN---RRYLGYQYID----AKYQQSDKPSIAYGNPLVCQRADKTWQIDGVSNFRN---SYSQYIAFSEVNTILKW 1053
G+S++ N E +A PG+WPW VSLQ G+ FCGGS++S + ++TAA C + D +VVAG D E Q + + ++P + +++I L++L+ P + + V VC+P G C GWG + KLQQ L +L N ++ G + D A G PLVCQ+ D W + G+ ++ + S S ++ V ++ W
Sbjct: 30 GLSRIVNGE-----DAVPGSWPWQVSLQDKTGFHFCGGSLISEDWVVTAAHCGVRTSD-----VVVAGEFDQGSDEENIQVLKIAKVFKNPKFSILTV-NNDITLLKLATPARFSQTVSAVCLPSADDDFPAGTLCATTGWGKTKYNANKTPDKLQQAALPLLSNAECKKSWGRRITDVMICAGASGVSSCMGDSGGPLVCQK-DGAWTLVGIVSWGSDTCSTSSPGVYARVTKLIPW 255
The following BLAST results are available for this feature:
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