XLOC_044800 (gene) - C. hemisphaerica

Overview
NameXLOC_044800
Unique NameXLOC_044800
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_71:1125995..1130764+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_044800 ID=XLOC_044800|Name=XLOC_044800|organism=Clytia hemisphaerica|type=gene|length=4770bp|location=Sequence derived from alignment at scaffold_71:1125995..1130764+ (Clytia hemisphaerica)
TGGCATGAGAAAGGGCATGGCCCTTTTATTGTATAATAGAGTGTTGCTTT
CATTTTACATGACAGCTgactaaaggaagaaaaaacaaCCATGCGTATAA
AATCTagagaaatttatcaaaatttcattcaGATCAGATCAACACATTGA
CAGAGATAAAACTTTGAAAGAGAGGACtagaaatatttatattttgtcAT
GCTGAGATCAGTGTTGAGTTTAACTATCATCATTGCTGCAGTGTGTAAGT
TCAAAGTCTTACTTTGGCAAATCTTTTCAATCTTTCTATATTAATTGAAC
AGTAAGAAAGAaattattcttgatattttgtgATGTAAAAGAAACATCCA
AACAACATTAGGCATTTGATACAGTCGATTATAGTTTAAAACTTGTGGCA
AACGTCCAGTGTacaattcctattgaaattctAGATGCATGCAGTGACGA
GAAAAGCAGCTGtcctggatggaaaattttatgTAAAACAAATCAAGCTG
TCCGAAACCTTTGTAAAAAGACTTGTGGTATATGCaaagatgaaaagaaa
gaaaaagaagaaaagtgtGGAATTTCAAAAGTTCCAAATATAGAGGCTGT
AACAAGTGCTAATGCCCCACCAGGAGCCTGGCCATGGGTTGTATCTCTGC
AGACCACATGGGGGTATCAATTTTGTGGTGGATCAATCGTGTCTCCAAAC
TTGGtagattgttttttattgaattaATAATGTAGAAAATGACTACTAAT
TTGGCACTATAAATATTTATAGTTCCTTATTAATTTAGTTGAGCTTCTAG
ATTTTATCAATTATAGCTTCATATTTTGATGAGATTTTgctaaagtacct
gaaaatcagaTCGGtctttaacctttccagcgcgcaactttttaaatttt
cacgctgtcagcgcgcaacattttttcagaaaatagacatgctcagttat
ttgatcataactcaagaactaggaATCTTTAGAACAAAAGTAAGTATTCC
TGAAAAGCTACTTAAATTCTACAACTTTTAGACCAAGtaccaatccaaat
aaaatattccaacaaaaatggtagcatcacgtaaaccacagttttttttc
acgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNATGCTAAATGTCAtcataataattccatgtgGCTGTTATG
TGGTTCCTGCCATCATTTTAATCCATATAAGCTGTAATCAGGACATCGTT
ATGAGCCAAGAATTTCGGGGATCGATCGACCGTTGCTGGTGGAGCGGAAG
AAGTATGCAATTCAACATAACTCCaggcttttcaaattctttggtgctcc
tttgaaataaatgaggtttagaaaacacttttgcattgaatttgTCCACT
TTCCATGCTCCAACctgaataaaaagtaaaaagtactgTAAGTTTGGGTC
GACTCCGATGGTTTGTCgagaaaagtggtcaaaatgacaaataaatggAA
TTTGTATGctagaaacaaaacacaaaatataagatatacttactggatgt
tttgccattataaaaacaatgtttccatgaagaaaagtggcctaaaccag
tcaaaaaatccaagaactttagcagtaagtttgaaaaacccaTTTCTTGG
TCGCCATCTTGATTCAGTGTTTTTCTCTACCTTTTCTCCGAAATCTGCTG
CCTCACCACGTGATCAAAATATTACATCaccatatatcaaaagaaagctt
agaacctctactttccgtttctctttacttctacggctagcaaagaagcc
aatgggagaaatatagcttagaagatcactatgtcaaaaagacgactata
ctcgtccggcggaacgtatgctcgacgactatactcgtccgccgggctga
aaaggttaaACAGTCTTTTAAAGGCTGGTACCAAATCAATCGAATTGGTT
GTATCCCAAAATTATGGTGCAGCCAAATAAATCAATCAGTGCTCAGAAAA
ACGTTTGATTGTTGAATAAACTTTTGGATAGTTAGtatattaaaaatttt
ccaaaaggtTGCTACGAGTCTGGTCAATTAAGCTACCATTTTAAAGCGTT
TTTActtgaaaacccaaaaatttgTTACTGTCGTTGACAAGAGACCGAAT
TATAATATTCTACCGACTCGTTTGAGCAATGAACCAGACTCTGTTGTTCC
CGATCTTTTAATCAATTAGTTTTCCTTAAAAGattgctttgaaagaaaat
ttgtttaacAGTCTAAATTCTTGATTTAACTGCTATTAAATTGCTCTTTA
TAAGGAACTTAGTTGcatagtggtatagtggtcatcaTCCCCGACTCTAG
CCTGGAAGGCCTTAGTTCGCTTTgcaagtgaatataccttcgcccgggtc
aacccataccatgtgaagggaattgggtaccattactctgaaACAAGAAT
GTGGGTAGATAAGACTGGCATTGTGACATGCTGTGGCACTTGGTTTGGCC
TTGCGTGAGCATCGCTCTCTCAGTGTCGTTCGAGTACCAATGTATACGTC
ATGGCTAACTGCGTCTGTCAAGTTGCAGTGCCTGTCAGCGCTGCGATTCC
TACTCCTTCAGAAGTAGAACCCATCTTGAATGATTCGGAGGGCATATATC
TATATTTCAGGTACTTAAAATCCCAATTATGGCAACAATATTGCACTaaa
tatgtgactccccaagcgatttaaagtacctgaaaatcggACCGGTCTTT
AGACAGTCTTTTAAGGACCGGTAAATGACCGGTAAAAATTTACTAAAAGG
CCACTACGAGTCTAGTTAATTTAGTTGCCGCTGCGAAGCGTCCGGTCCTA
GACCGGCCCCAGACCGGCCCCGATCGCCCAGTCGACATCCTTTTACAACA
ATTTTTTCATGTAATAGTTACTAAAAATCACTAACTAGCGGCCCGGACCG
GTCTAACGAACGACCCGGACCGGGCCACGAGCGTCTAGAAGCGGCCGGGA
CCATTAGAGATCACATTTCTAGAAGGTCTGGAGGCCGatgtaaaacaaaa
atttgaccgcTACTAGACCGCTCGTAATACCGGACCAAGACTGGTCTGAT
attcaggtactttaaatcgcttgggaAGTCACATATACTAATggtcaaat
atatttttccatttcaaagATTATGACAGCTGCTACTTGTCTAATAACTC
GCCAAGACACGCCAGCTAAAATTATGGTTGTTGCAGGGGCACATGACATC
AAAGAAAAATCAGAATATGAACAAAAGATTATCGCAAAGAGTATTATTCG
TCACCCAGCTTATGATTATGATAAACGTGGAAGTCACAATATTGCTTTGA
TTGAGCTATCAGAGCCATTGAAAATGAATGATCACGTTATGAATGTATGC
ATGCCAAAACAATATACTCGGCCAAAAGTTGGAGACACTTGCATCTATTT
AGGTTAGAATCTCAGAGCTTTTTTAATACTTTACAAACTTCCAACCAACA
TTGTAATCAGCGtattagaaagaaaattttaaatcattTCAATAAGATAA
TATTTTAACCAAATTCCAAGTTTTTTCGCTACACTTTGTGCAGTAAATAT
TATGTGTTGTGTTGTATTTTGTACTTTGATTTTTAGAAAGAGAGAAAGAA
AACACTTTGAAGTATAACTAACTTTATTGTTTTTAGGCTGGGGAGTACCA
CATCAAACATCAACAACCAAACTTCAACAGGTCCCACTTTCCATTTTAAA
GAATAGAAGATATTTGGGCTATCAATACATTGATGCAAAATACCAACAGT
CAGACAAGCCCAGTATTGCTTATGGTAACCCTTTGGTGTGTCAACGCGCT
GATAAAACATGGCAAATTGATGGGGTATCAAACTTTAGGAATTCCTATAG
TCAATATATCGCATTTTCCGAAGTAAATACTATTTTGAAATGGCTGGAGG
AGAAGGAGGATAAGTATTTGTAACTAAAATATTACTTCCAAACAAGAGAT
ATTTATAACCTTGCTTCAAGCTCACaatatcatgaattagaaagaaaaaa
aaagaatgatctAATTCTTAATAAGAAGCTAAAATCTATATTatataaac
tttttatttttacttactACTGATCTATAACAAAACTTTTTGTATAGCAA
GCATATAATCTAttaaggaaaataaattttttggctAATTAAATGCAGAT
TTAACGCCTATTTGCTTCAACGATTCTCTAAGGTAAAAAGTCTTTAAATG
TTAGCACAATACTTCAAATGGtgataaaattatgaaatttttataaacag
atcagctaaacaaaagaaattatcaagattatgtcttttcgttctttaaa
aatttgaaaatgagtactcg
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00072140TCONS_00072140Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00072140-proteinTCONS_00072140-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:1125995..1130764 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.56	0.46	0.73	0.56	0	0.18	0.54	0.34	1.22	0.32	0.85	1.13	0.54	0.4	1.22	0.61	108.86	191.17	0.06	0.16	331.17	304.32	97.68	120.34	26.4	15.86	30.62	44.89	523.15	560.85