TCONS_00071185 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071185
Unique NameTCONS_00071185
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length687

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071185 ID=TCONS_00071185|Name=TCONS_00071185|organism=Clytia hemisphaerica|type=transcript|length=687bp
TTCGGATTAACAAAATCCGGAGCTCTTTTGATGGAGTACATCTCCTCAAA
TGCAAACCGCCTCACCAGTTCAACCACGTTAAGATCGATATTGAAGTCTG
GGCAGTATAAAAAGAAGATTTGGTTCGACATATGTAGAAAGTTAGTTGAT
GCTTTATCCTTTATGTACGATAAAGGGCTACTCCACAATGATCTCCACAG
TGAGAACATTTTGATTCGAAGTAACAAACAACCGTGTATAATTGATTTCG
GAAAATGTACCCTTGTGAATTCACCATTTCATTATAATATCAAGGCTGGA
TCTAAAGAGCAGCTTAAATTCAACACGTACCACATTCACTTGGCCACCGA
ATTAAGGAACGTGCCAAATTCTCCCCAGACTGTCTACACAGACATATACT
CACTTGGCTTCAATTTCGCCAGCATTGGGAAATTTCAGAACATTGAGGAC
ATTACTAAACTGGCGAAACGAATGACAGTTGAAGAACCCTTAAATCGGTA
CGATCTGATGGATTGCAATGTCAGTTTGTTAAAGTACTAGattttattag
atttttatAAGGATTTTACCTTTTTTACGTCAAACAAAAAGTACTTTAAT
GTGATTAAAGTTTGTGGGCACCATCAGAAgataatatttttactttttac
tttcaaaCATTACGTGTTGGTTCTTGAAATACCTTTG
Run BLAST on NCBI

protein sequence of TCONS_00071185-protein

>TCONS_00071185-protein ID=TCONS_00071185-protein|Name=TCONS_00071185-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
FGLTKSGALLMEYISSNANRLTSSTTLRSILKSGQYKKKIWFDICRKLVD
ALSFMYDKGLLHNDLHSENILIRSNKQPCIIDFGKCTLVNSPFHYNIKAG
SKEQLKFNTYHIHLATELRNVPNSPQTVYTDIYSLGFNFASIGKFQNIED
ITKLAKRMTVEEPLNRYDLMDCNVSLLKY
Run BLAST on NCBI

transcript from alignment at scaffold_6:6111..6797

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071185 ID=TCONS_00071185|Name=TCONS_00071185|organism=Clytia hemisphaerica|type=transcript|length=687bp|location=Sequence derived from alignment at scaffold_6:6111..6797 (Clytia hemisphaerica)
CAAAGGTATTTCAAGAACCAACACGTAATGtttgaaagtaaaaagtaaaa
atattatcTTCTGATGGTGCCCACAAACTTTAATCACATTAAAGTACTTT
TTGTTTGACGTAAAAAAGGTAAAATCCTTataaaaatctaataaaatCTA
GTACTTTAACAAACTGACATTGCAATCCATCAGATCGTACCGATTTAAGG
GTTCTTCAACTGTCATTCGTTTCGCCAGTTTAGTAATGTCCTCAATGTTC
TGAAATTTCCCAATGCTGGCGAAATTGAAGCCAAGTGAGTATATGTCTGT
GTAGACAGTCTGGGGAGAATTTGGCACGTTCCTTAATTCGGTGGCCAAGT
GAATGTGGTACGTGTTGAATTTAAGCTGCTCTTTAGATCCAGCCTTGATA
TTATAATGAAATGGTGAATTCACAAGGGTACATTTTCCGAAATCAATTAT
ACACGGTTGTTTGTTACTTCGAATCAAAATGTTCTCACTGTGGAGATCAT
TGTGGAGTAGCCCTTTATCGTACATAAAGGATAAAGCATCAACTAACTTT
CTACATATGTCGAACCAAATCTTCTTTTTATACTGCCCAGACTTCAATAT
CGATCTTAACGTGGTTGAACTGGTGAGGCGGTTTGCATTTGAGGAGATGT
ACTCCATCAAAAGAGCTCCGGATTTTGTTAATCCGAA

Coding sequence (CDS) from alignment at scaffold_6:6111..6797

>TCONS_00071185 ID=TCONS_00071185|Name=TCONS_00071185|organism=Clytia hemisphaerica|type=CDS|length=540bp|location=Sequence derived from alignment at scaffold_6:6111..6797 (Clytia hemisphaerica)
CTAGTACTTTAACAAACTGACATTGCAATCCATCAGATCGTACCGATTTA
AGGGTTCTTCAACTGTCATTCGTTTCGCCAGTTTAGTAATGTCCTCAATG
TTCTGAAATTTCCCAATGCTGGCGAAATTGAAGCCAAGTGAGTATATGTC
TGTGTAGACAGTCTGGGGAGAATTTGGCACGTTCCTTAATTCGGTGGCCA
AGTGAATGTGGTACGTGTTGAATTTAAGCTGCTCTTTAGATCCAGCCTTG
ATATTATAATGAAATGGTGAATTCACAAGGGTACATTTTCCGAAATCAAT
TATACACGGTTGTTTGTTACTTCGAATCAAAATGTTCTCACTGTGGAGAT
CATTGTGGAGTAGCCCTTTATCGTACATAAAGGATAAAGCATCAACTAAC
TTTCTACATATGTCGAACCAAATCTTCTTTTTATACTGCCCAGACTTCAA
TATCGATCTTAACGTGGTTGAACTGGTGAGGCGGTTTGCATTTGAGGAGA
TGTACTCCATCAAAAGAGCTCCGGATTTTGTTAATCCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044241XLOC_044241Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071185-exon-scaffold_6-1491911889:6111..6797TCONS_00071185-exon-scaffold_6-1491911889:6111..6797Clytia hemisphaericaexon
TCONS_00071185-exon-scaffold_6-1510915933:6111..6797TCONS_00071185-exon-scaffold_6-1510915933:6111..6797Clytia hemisphaericaexon
TCONS_00071185-exon-scaffold_6-1575043694:6111..6797TCONS_00071185-exon-scaffold_6-1575043694:6111..6797Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071185-proteinTCONS_00071185-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:6111..6797 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.53147	6.7311	3.02533	1.80878	21.7198	21.9089	8.20639	10.6307	9.69444	8.44443	7.89558	10.7265	4.4426	4.56242	5.56317	2.93984	3.84451	5.13979	1.73577	1.23843	2.87045	2.83521	2.63812	5.10634	11.1563	16.9976	1.32304	0.868911	0.906177	0.587524
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071185 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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