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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070681 ID=TCONS_00070681|Name=TCONS_00070681|organism=Clytia hemisphaerica|type=transcript|length=2129bpRun BLAST on NCBI protein sequence of TCONS_00070681-protein >TCONS_00070681-protein ID=TCONS_00070681-protein|Name=TCONS_00070681-protein|organism=Clytia hemisphaerica|type=polypeptide|length=426bp MSGGLYGGDEVGAVVFDIGSSSTRVGFAGEDIPKSDICSTIGIIKENEAMRun BLAST on NCBI transcript from alignment at scaffold_57:433461..452346- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070681 ID=TCONS_00070681|Name=TCONS_00070681|organism=Clytia hemisphaerica|type=transcript|length=18886bp|location=Sequence derived from alignment at scaffold_57:433461..452346- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_57:433461..452346- >TCONS_00070681 ID=TCONS_00070681|Name=TCONS_00070681|organism=Clytia hemisphaerica|type=CDS|length=16653bp|location=Sequence derived from alignment at scaffold_57:433461..452346- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00070681 vs. Swiss-Prot (Human)
Match: ACL6A (Actin-like protein 6A OS=Homo sapiens GN=ACTL6A PE=1 SV=1) HSP 1 Score: 507.679 bits (1306), Expect = 1.766e-173 Identity = 248/432 (57.41%), Postives = 316/432 (73.15%), Query Frame = 1
Query: 58 MSGGLYGGDEVGAVVFDIGSSSTRVGFAGEDIPKSDICSTIGIIKENE----AMDIDNETTKPANRRYHFDPQHY-LPLANKEMVNFVRDGMIHDWDLLEKLLNHCYKDHIRDAADQHPVLMSEAPWNTKEKREKLTELMFEKYNIPAFFLCKNAVLSCFAHGRSTSLIVDSGATHTSAVPVHDGFVLQKGVIRSPLAGDLLTAQCLELMDSWNVDVVPAYMXXXXXXXXXXXXXXYIARE-LPELTESYKQFMKREVMKDFQKSVLQVSDSPFVRNELDVVPSALYEFPNGLNKHIGVDRFRISETLFDTSHMNNIKGFENTTLLGAPHVISTSIGMCDMDIRTGLYNSVIVVGGSTLVNGFVERLNRELLQKTPNNMRLKLVSNNQASERRYSSWIGGSILASLGSFQQMWVSKQEYEESGKTIVEKKCP 1335
MSGG+YGGDEVGA+VFDIGS + R G+AGED PK D + IG++ E + M+ID + K Y+ D +P N E ++ +++GM+ DWD + +L+H YK H++ A HPVLMSEAPWNT+ KREKLTELMFE YNIPAFFLCK AVL+ FA+GRST LI+DSGATHT+A+PVHDG+VLQ+G+++SPLAGD +T QC EL N+++VP YM+ SKE V E A + +E LP++T S+ +M V++DFQ SVLQVSDS + +P+ YEFPNG N G +R +I E LFD S N+KG T+LG HV++TS+GMCD+DIR GLY SVIV GG+TL+ F +RLNREL QKTP +MRLKL++NN ERR+SSWIGGSILASLG+FQQMW+SKQEYEE GK VE+KCP
Sbjct: 1 MSGGVYGGDEVGALVFDIGSYTVRAGYAGEDCPKVDFPTAIGMVVERDDGSTLMEIDGDKGKQGGPTYYIDTNALRVPRENMEAISPLKNGMVEDWDSFQAILDHTYKMHVKSEASLHPVLMSEAPWNTRAKREKLTELMFEHYNIPAFFLCKTAVLTAFANGRSTGLILDSGATHTTAIPVHDGYVLQQGIVKSPLAGDFITMQCRELFQEMNIELVPPYMIASKEAVREGSPANWKRKEKLPQVTRSWHNYMCNCVIQDFQASVLQVSDSTYDEQVAAQMPTVHYEFPNGYNCDFGAERLKIPEGLFDPS---NVKGLSGNTMLGVSHVVTTSVGMCDIDIRPGLYGSVIVAGGNTLIQSFTDRLNRELSQKTPPSMRLKLIANNTTVERRFSSWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKCP 429 The following BLAST results are available for this feature:
BLAST of TCONS_00070681 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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