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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070434 ID=TCONS_00070434|Name=TCONS_00070434|organism=Clytia hemisphaerica|type=transcript|length=2595bp
gcCAGAATTCAGTACGATCAAGATAGTATTTTTACGAACGTTCTGCGTTT
TATACCTCTTGATATCCGCCATTTTATTGCACATGGTTGCCATGTTCCGC
CCATGGAAACAGGAATGGGTTGGGAAGCCAAGTAATTTGTTTGAGATTTC
GATATGGAAGATATGCAGGAAGTcgagaaaatcaacaaaatgttATGAAG
GTGAACTGGATGATGCCCCAGGTTGGTTTATGGCACTTCGATGGTTTATC
ATGTTAtcagtattcatgcagtacatCTCCTTGTTGTTCACATTGGCTAA
AATCACTTTCACCAAAAACTCAACTAGTCGACAGTTCTGGATACCCGCTT
TCTTATGCTTGTTCTCAGcTGTATTCATACTATGTGGAATGTTGATGTTA
GTCGGTTACCGTGAGTTTGACTTCTTAGAAGAATCCAGAATGTATCGCAT
GGGGTGGCGATTTGAAGAAGTCCGAATTGACGAGGCATGGGGCTGGCCTT
ACTACCTAAGTTGGGGTAATTTTGCAATTTGTTTGGTCGGCTTTTTAGTA
TGTATGTACACGCATGTCACAGATACAAAATGGAGTAAAAGTTATGAAAT
GTTTAACATGAGAAATAAAGCCAAGAAACTTTTGAGGTAATTTCTGATTG
GAGGAACGAAGGATATTGTGCGACTTAAACGAGAATCTTTAATGGAGTTT
CCGAAGAAAAGGAATACGTTTGTAAATAATTGAACACTGGagaagttatt
atttttttgaaatcatttggTAAAGGCATTACACGGAGTGGGCACTCACA
CCCGTGTGTCTCAGACTTACTGGGATTCCAGcccctggaaaatttggcca
aaatttagtcctggtggaaaaaataccctacattttTAGACCCCTTCTTt
gaaattgactttgacttcatctctatttaaaattcaatagaaaaaattgc
actctaaaaccattCCAAACTGGATTTCTTAACCTGAGAACGATAacatt
tctatccccactgggatttcgaaagaaatttttaaCCACACTGTGGGAAG
TTCCACCACCCGGGGCCCGGGGGTGTGAGACAGGGGTCTGTTTCTTATGA
cattttttggtgaaaaactaatctccttgtaaaatattttttaattactc
AAATTCTTGAAACTAcccattattttcaattttttaatttttcttgaaaa
gcgaatttttaataaaaacgggaggctcaatttttccaaaaacctTTAGT
TTTGACTGTTTTGGGATGGTAATGTAACGAGTTTTAAAAACTAGCCAGTT
TATATGTTTGGCTGTAGTAGCCAATCGCCAATCGATCAATTTATTTTTTC
GGTCTCACCAGAAAATTAAGTTGTTCGCCGTGATCAATTCCAAAAAGGCT
TAAAAGATTTAAAAGTTGAAAGCATCTGAAAGGTTGGTAAGTGTTCAGAG
CAATCAACGAAAGTCTTTTGGCtttttcgaaaatatatttttcatgtcaG
ATAATTAGAGAGAAATTTATACAGTGTTCTTGTATTTACAATAATATTTA
TGGTGGACACAGAAGGTACTCTTAGCAAGGAATATAACAAAGATTGCAGA
TTATTTTGCTTCGCCTGCCGTTGCTTGGAAAATACAGAGTGGCTCCATAA
TGGGATATCTGTGGATAATGTGCATGGTAACCAGCTGATATTACGTATTT
ATATACAAAATCATTGTGTGCAATCTTGGGTGgcacaaatttaattttta
aattttcaaagaaaacgtAACTTTTTCCAGTGCTGAAACttgaaattatg
tttttattCAGTCGACCTTTATTGCAGTCTTTTTAGCAGAAATGGAAGAA
GCAACATGCTGCCAATTCTTATGGATTAATGgtatatttaaaagtttttg
ctgTTGTGTATATGGTCTGTTCAATTTTCGAAATGTATGAAGAAGTTGAA
TGGTGTTCTGATTCACTCTACATTTCTCAAAACTTGAACCAATCCTTCTT
TAACTCTCATCTGACGATCTATAGCATAAACCGATTCGTCCGGTCGGGAA
ACAATCGGTTTGCCATCACTCCATAACCATTCCGAAAcgggttgttgttg
ttgtgccGAAGCAGCGATTAATCTTGAGTTGTTGTCTTGATCGTTGTGTT
GTAAGATGCCAAGGAAAATATGTTGTAACAAAAATTCATCTCTCAACTTC
TTGTTAACTTCGAGCTCGTTGACTTTTTCAAAGCCCATTTGGTGGAACAC
GTCATCATGTAAGACTTGTATAGTGAATTGCTTAGCCTTGAGAAGCTCCT
TGAAATGTTGTTGAACATCACCAGTGACTTTAACGCATAATCCTTTGACG
AAGCAAACTTTATCAACAACCATTTTGCGATTTTGTAACAAACCTCTGAT
TGGACTCTTCTTAAAAAGCGAGTACATGACAGACAAATCTTCGTTGCTCT
TCAATGTTTGCATGAGTTTGATAGCAGAGTGCTTGATGAGGTCATCGATT
ACAGTGATAGTGAGGTTAGGCCCATAACTTAAGGCTACTTTTACATGGGC
ATCGTTGATCTTGTGTGAAACCTATGGAAAAGACGAGAAAATGTG Run BLAST on NCBI protein sequence of TCONS_00070434-protein >TCONS_00070434-protein ID=TCONS_00070434-protein|Name=TCONS_00070434-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
PEFSTIKIVFLRTFCVLYLLISAILLHMVAMFRPWKQEWVGKPSNLFEIS
IWKICRKSRKSTKCYEGELDDAPGWFMALRWFIMLSVFMQYISLLFTLAK
ITFTKNSTSRQFWIPAFLCLFSAVFILCGMLMLVGYREFDFLEESRMYRM
GWRFEEVRIDEAWGWPYYLSWGNFAICLVGFLVCMYTHVTDTKWSKSYEM
FNMRNKAKKLLR Run BLAST on NCBI transcript from alignment at scaffold_56:187273..191298+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070434 ID=TCONS_00070434|Name=TCONS_00070434|organism=Clytia hemisphaerica|type=transcript|length=4026bp|location=Sequence derived from alignment at scaffold_56:187273..191298+ (Clytia hemisphaerica)
gcCAGAATTCAGTACGATCAAGATAGTATTTTTACGAACGTTCTGCGTTT
TATACCTCTTGATATCCGCCATTTTATTGCACATGGTTGCCATGTTCCGC
CCATGGAAACAGGAATGGGTTGGGAAGCCAAGTAATTTGTTTGAGATTTC
GATATGGAAGATATGCAGGAAGTcgagaaaatcaacaaaatgttATGAAG
GTGAACTGGATGATGCCCCAGGTGAAAATAATCTTATTTTGGCATTTTCA
ATGATGTACTGTACTGATCACGAAGGAAATCATCTACAGTGGATTCCCTT
TAACACGATCCTTTATAACTCAAAATTACCTTTACTCCAAATAAATTGTG
CTCCAtatgtgtgttcgagttatggagactgtaTGTATTAAGTTAACAGC
TTCTGAATTGTCTAGATCCTAATCAGCTGAAGACGGCGGTATACGAGCAC
TTTTAccatcctcgattttgcggtGCAGAATAATTGTTTTTCTGAATTAC
TTCCAGTCACTCtgtcgtcctcaaaagtgcaaattaaACTCAAGCTAAAC
TAATTAAAACTCGTTATTGTTAACAAATGTTAGCTCAGTCCTTTTACAAA
TACAATAGGCTGACCAGAATGACTGGAcacaacccagctggcacacaacg
ttgttttaacaacgttcaaataacgttatatggacgttatgaacgtcaca
tggacgttgttttaacgttgtgTGACGTTTGGGAACGTTATCTGGACAAA
GATGCACGTTAGCGTGTCATATGGAGGCGATTATCAaagtacaatttttt
taattttctttcattgtCTTATAGGTTGGTTTATGGCACTTCGATGGTTT
ATCATGTTAtcagtattcatgcagtacatCTCCTTGTTGTTCACATTGGC
TAAAATCACTTTCACCAAAAACTCAACTAGTCGACAGTTCTGGATACCCG
CTTTCTTATGCTTGTTCTCAGGTAAGCGTTTTCAATTATGAATCAAGTTT
TATGAAaaccagtagcgtagacaaggggACGCAAAATTTGTTTTGGAGAG
CAGATTtctatgacacagtaattactCTTTATATTACGAATagataatta
ctgtttcatAAAATTCTGCTcgcctacacaaattttgcgcctcTCTTCTA
CGCTACGCTACTGAAAGCAGTAAAACCTTTTGAGCGTCTTGTTGAATAAT
AGGTGAGTCTTTTGTATGCTGCATTTTCCAGCAGAGAAGGTCAGTTTTCA
TTTTGTCTTGATTTTGATTGACTGTGGACGTGTTTTaaccacagatttct
gtaaaagataaaagtgaatatcgcaaaaaaaatgctgcttttgttttcga
aaacacGGGAgacttcttattggtcaagtgctgatattctattgtaatgt
tacgtgacctaggtaggatttcctactaCTAATCGATCAGTCACTCTATT
ATTATCGAAAGGCTAGACAcataaatggggggggggttttgtacttttac
ggtgtgacgggattggcccttttttagtacggtattacgggatttgacga
aaaaagagacgggaaaacggtattttaaaatcagacggtgacgggaTTTA
GGTACAattttgccctgtacaagccggtgtgactgtgttattattttttc
aattttcgggattccgggattcatcaaaaattttgacgggaaaacggtat
ttcgaacccctacaaacccccccatAAATCCACTCTCTCGGTCTTCATcc
atttatactcttttgaGTTATTTCACTGtagtattttttcttttcatagc
TGTATTCATACTATGTGGAATGTTGATGTTAGTCGGTTACCGTGAGTTTG
ACTTCTTAGAAGAATCCAGAATGTATCGCATGGGGTGGCGATTTGAAGAA
GTCCGAATTGACGAGGCATGGGGCTGGCCTTACTACCTAAGTTGGGGTAA
TTTTGCAATTTGTTTGGTCGGCTTTTTAGTATGTATGTACACGCATGTCA
CAGATACAAAATGGAGTAAAAGTTATGAAATGTTTAACATGAGAAATAAA
GCCAAGAAACTTTTGAGGTAATTTCTGATTGGAGGAACGAAGGATATTGT
GCGACTTAAACGAGAATCTTTAATGGAGTTTCCGAAGAAAAGGAATACGT
TTGTAAATAATTGAACACTGGagaagttattatttttttgaaatcatttg
gTAAAGGCATTACACGGAGTGGGCACTCACACCCGTGTGTCTCAGACTTA
CTGGGATTCCAGcccctggaaaatttggccaaaatttagtcctggtggaa
aaaataccctacattttTAGACCCCTTCTTtgaaattgactttgacttca
tctctatttaaaattcaatagaaaaaattgcactctaaaaccattCCAAA
CTGGATTTCTTAACCTGAGAACGATAacatttctatccccactgggattt
cgaaagaaatttttaaCCACACTGTGGGAAGTTCCACCACCCGGGGCCCG
GGGGTGTGAGACAGGGGTCTGTTTCTTATGAcattttttggtgaaaaact
aatctccttgtaaaatattttttaattactcAAATTCTTGAAACTAccca
ttattttcaattttttaatttttcttgaaaagcgaatttttaataaaaac
gggaggctcaatttttccaaaaacctTTAGTTTTGACTGTTTTGGGATGG
TAATGTAACGAGTTTTAAAAACTAGCCAGTTTATATGTTTGGCTGTAGTA
GCCAATCGCCAATCGATCAATTTATTTTTTCGGTCTCACCAGAAAATTAA
GTTGTTCGCCGTGATCAATTCCAAAAAGGCTTAAAAGATTTAAAAGTTGA
AAGCATCTGAAAGGTTGGTAAGTGTTCAGAGCAATCAACGAAAGTCTTTT
GGCtttttcgaaaatatatttttcatgtcaGATAATTAGAGAGAAATTTA
TACAGTGTTCTTGTATTTACAATAATATTTATGGTGGACACAGAAGGTAC
TCTTAGCAAGGAATATAACAAAGATTGCAGATTATTTTGCTTCGCCTGCC
GTTGCTTGGAAAATACAGAGTGGCTCCATAATGGGATATCTGTGGATAAT
GTGCATGGTAACCAGCTGATATTACGTATTTATATACAAAATCATTGTGT
GCAATCTTGGGTGgcacaaatttaatttttaaattttcaaagaaaacgtA
ACTTTTTCCAGTGCTGAAACttgaaattatgtttttattCAGTCGACCTT
TATTGCAGTCTTTTTAGCAGAAATGGAAGAAGCAACATGCTGCCAATTCT
TATGGATTAATGgtatatttaaaagtttttgctgTTGTGTATATGGTCTG
TTCAATTTTCGAAATGTATGAAGAAGTTGAATGGTGTTCTGATTCACTCT
ACATTTCTCAAAACTTGAACCAATCCTTCTTTAACTCTCATCTGACGATC
TATAGCATAAACCGATTCGTCCGGTCGGGAAACAATCGGTTTGCCATCAC
TCCATAACCATTCCGAAAcgggttgttgttgttgtgccGAAGCAGCGATT
AATCTTGAGTTGTTGTCTTGATCGTTGTGTTGTAAGATGCCAAGGAAAAT
ATGTTGTAACAAAAATTCATCTCTCAACTTCTTGTTAACTTCGAGCTCGT
TGACTTTTTCAAAGCCCATTTGGTGGAACACGTCATCATGTAAGACTTGT
ATAGTGAATTGCTTAGCCTTGAGAAGCTCCTTGAAATGTTGTTGAACATC
ACCAGTGACTTTAACGCATAATCCTTTGACGAAGCAAACTTTATCAACAA
CCATTTTGCGATTTTGTAACAAACCTCTGATTGGACTCTTCTTAAAAAGC
GAGTACATGACAGACAAATCTTCGTTGCTCTTCAATGTTTGCATGAGTTT
GATAGCAGAGTGCTTGATGAGGTCATCGATTACAGTGATAGTGAGGTTAG
GCCCATAACTTAAGGCTACTTTTACATGGGCATCGTTGATCTTGTGTGAA
ACCTATGGAAAAGACGAGAAAATGTG Coding sequence (CDS) from alignment at scaffold_56:187273..191298+ >TCONS_00070434 ID=TCONS_00070434|Name=TCONS_00070434|organism=Clytia hemisphaerica|type=CDS|length=1917bp|location=Sequence derived from alignment at scaffold_56:187273..191298+ (Clytia hemisphaerica)
cCAGAATTCAGTACGATCAAGATAGTATTTTTACGAACGTTCTGCGTTTT
ATACCTCTTGATATCCGCCATTTTATTGCACATGGTTGCCATGTTCCGCC
CATGGAAACAGGAATGGGTTGGGAAGCCAAGTAATTTGTTTGAGATTTCG
ATATGGAAGATATGCAGGAAGTcgagaaaatcaacaaaatgttATGAAGG
TGAACTGGATGATGCCCCAGGTTGGTTTATGGCACTTCGATGGTTTATCA
TGTTAtcagtattcatgcagtacatCTCCTTGTTGTTCACATTGGCTAAA
ATCACTTTCACCAAAAACTCAACTAGTCGACAGTTCTGGATACCCGCTTT
CTTATGCTTGTTCTCAGcTGTATTCATACTATGTGGAATGTTGATGTTAG
TCGGTTACCGTGAGTTTGACTTCTTAGAAGAATCCAGAATGTATCGCATG
GGGTGGCGATTTGAAGAAGTCCGAATTGACGAGGCATGGGGCTGGCCTTA
CTACCTAAGTTGGGGTAATTTTGCAATTTGTTTGGTCGGCTTTTTAGTAT
GTATGTACACGCATGTCACAGATACAAAATGGAGTAAAAGTTATGAAATG
TTTAACATGAGAAATAAAGCCAAGAAACTTTTGAGGTAAcCAGAATTCAG
TACGATCAAGATAGTATTTTTACGAACGTTCTGCGTTTTATACCTCTTGA
TATCCGCCATTTTATTGCACATGGTTGCCATGTTCCGCCCATGGAAACAG
GAATGGGTTGGGAAGCCAAGTAATTTGTTTGAGATTTCGATATGGAAGAT
ATGCAGGAAGTcgagaaaatcaacaaaatgttATGAAGGTGAACTGGATG
ATGCCCCAGGTTGGTTTATGGCACTTCGATGGTTTATCATGTTAtcagta
ttcatgcagtacatCTCCTTGTTGTTCACATTGGCTAAAATCACTTTCAC
CAAAAACTCAACTAGTCGACAGTTCTGGATACCCGCTTTCTTATGCTTGT
TCTCAGcTGTATTCATACTATGTGGAATGTTGATGTTAGTCGGTTACCGT
GAGTTTGACTTCTTAGAAGAATCCAGAATGTATCGCATGGGGTGGCGATT
TGAAGAAGTCCGAATTGACGAGGCATGGGGCTGGCCTTACTACCTAAGTT
GGGGTAATTTTGCAATTTGTTTGGTCGGCTTTTTAGTATGTATGTACACG
CATGTCACAGATACAAAATGGAGTAAAAGTTATGAAATGTTTAACATGAG
AAATAAAGCCAAGAAACTTTTGAGGTAAcCAGAATTCAGTACGATCAAGA
TAGTATTTTTACGAACGTTCTGCGTTTTATACCTCTTGATATCCGCCATT
TTATTGCACATGGTTGCCATGTTCCGCCCATGGAAACAGGAATGGGTTGG
GAAGCCAAGTAATTTGTTTGAGATTTCGATATGGAAGATATGCAGGAAGT
cgagaaaatcaacaaaatgttATGAAGGTGAACTGGATGATGCCCCAGGT
TGGTTTATGGCACTTCGATGGTTTATCATGTTAtcagtattcatgcagta
catCTCCTTGTTGTTCACATTGGCTAAAATCACTTTCACCAAAAACTCAA
CTAGTCGACAGTTCTGGATACCCGCTTTCTTATGCTTGTTCTCAGcTGTA
TTCATACTATGTGGAATGTTGATGTTAGTCGGTTACCGTGAGTTTGACTT
CTTAGAAGAATCCAGAATGTATCGCATGGGGTGGCGATTTGAAGAAGTCC
GAATTGACGAGGCATGGGGCTGGCCTTACTACCTAAGTTGGGGTAATTTT
GCAATTTGTTTGGTCGGCTTTTTAGTATGTATGTACACGCATGTCACAGA
TACAAAATGGAGTAAAAGTTATGAAATGTTTAACATGAGAAATAAAGCCA
AGAAACTTTTGAGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070434-exon-scaffold_56-1491911889:187273..187493 | TCONS_00070434-exon-scaffold_56-1491911889:187273..187493 | Clytia hemisphaerica | exon |
| TCONS_00070434-exon-scaffold_56-1510915933:187273..187493 | TCONS_00070434-exon-scaffold_56-1510915933:187273..187493 | Clytia hemisphaerica | exon |
| TCONS_00070434-exon-scaffold_56-1575043694:187273..187493 | TCONS_00070434-exon-scaffold_56-1575043694:187273..187493 | Clytia hemisphaerica | exon |
| TCONS_00070434-exon-scaffold_56-1491911889:188097..188243 | TCONS_00070434-exon-scaffold_56-1491911889:188097..188243 | Clytia hemisphaerica | exon |
| TCONS_00070434-exon-scaffold_56-1510915933:188097..188243 | TCONS_00070434-exon-scaffold_56-1510915933:188097..188243 | Clytia hemisphaerica | exon |
| TCONS_00070434-exon-scaffold_56-1575043694:188097..188243 | TCONS_00070434-exon-scaffold_56-1575043694:188097..188243 | Clytia hemisphaerica | exon |
| TCONS_00070434-exon-scaffold_56-1491911889:189072..191298 | TCONS_00070434-exon-scaffold_56-1491911889:189072..191298 | Clytia hemisphaerica | exon |
| TCONS_00070434-exon-scaffold_56-1510915933:189072..191298 | TCONS_00070434-exon-scaffold_56-1510915933:189072..191298 | Clytia hemisphaerica | exon |
| TCONS_00070434-exon-scaffold_56-1575043694:189072..191298 | TCONS_00070434-exon-scaffold_56-1575043694:189072..191298 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_56 | supercontig | scaffold_56:187273..191298 + |
Blast
The following BLAST results are available for this feature:
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