XLOC_043866 (gene) - C. hemisphaerica

Overview
NameXLOC_043866
Unique NameXLOC_043866
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_56:187273..191298+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_043866 ID=XLOC_043866|Name=XLOC_043866|organism=Clytia hemisphaerica|type=gene|length=4026bp|location=Sequence derived from alignment at scaffold_56:187273..191298+ (Clytia hemisphaerica)
gcCAGAATTCAGTACGATCAAGATAGTATTTTTACGAACGTTCTGCGTTT
TATACCTCTTGATATCCGCCATTTTATTGCACATGGTTGCCATGTTCCGC
CCATGGAAACAGGAATGGGTTGGGAAGCCAAGTAATTTGTTTGAGATTTC
GATATGGAAGATATGCAGGAAGTcgagaaaatcaacaaaatgttATGAAG
GTGAACTGGATGATGCCCCAGGTGAAAATAATCTTATTTTGGCATTTTCA
ATGATGTACTGTACTGATCACGAAGGAAATCATCTACAGTGGATTCCCTT
TAACACGATCCTTTATAACTCAAAATTACCTTTACTCCAAATAAATTGTG
CTCCAtatgtgtgttcgagttatggagactgtaTGTATTAAGTTAACAGC
TTCTGAATTGTCTAGATCCTAATCAGCTGAAGACGGCGGTATACGAGCAC
TTTTAccatcctcgattttgcggtGCAGAATAATTGTTTTTCTGAATTAC
TTCCAGTCACTCtgtcgtcctcaaaagtgcaaattaaACTCAAGCTAAAC
TAATTAAAACTCGTTATTGTTAACAAATGTTAGCTCAGTCCTTTTACAAA
TACAATAGGCTGACCAGAATGACTGGAcacaacccagctggcacacaacg
ttgttttaacaacgttcaaataacgttatatggacgttatgaacgtcaca
tggacgttgttttaacgttgtgTGACGTTTGGGAACGTTATCTGGACAAA
GATGCACGTTAGCGTGTCATATGGAGGCGATTATCAaagtacaatttttt
taattttctttcattgtCTTATAGGTTGGTTTATGGCACTTCGATGGTTT
ATCATGTTAtcagtattcatgcagtacatCTCCTTGTTGTTCACATTGGC
TAAAATCACTTTCACCAAAAACTCAACTAGTCGACAGTTCTGGATACCCG
CTTTCTTATGCTTGTTCTCAGGTAAGCGTTTTCAATTATGAATCAAGTTT
TATGAAaaccagtagcgtagacaaggggACGCAAAATTTGTTTTGGAGAG
CAGATTtctatgacacagtaattactCTTTATATTACGAATagataatta
ctgtttcatAAAATTCTGCTcgcctacacaaattttgcgcctcTCTTCTA
CGCTACGCTACTGAAAGCAGTAAAACCTTTTGAGCGTCTTGTTGAATAAT
AGGTGAGTCTTTTGTATGCTGCATTTTCCAGCAGAGAAGGTCAGTTTTCA
TTTTGTCTTGATTTTGATTGACTGTGGACGTGTTTTaaccacagatttct
gtaaaagataaaagtgaatatcgcaaaaaaaatgctgcttttgttttcga
aaacacGGGAgacttcttattggtcaagtgctgatattctattgtaatgt
tacgtgacctaggtaggatttcctactaCTAATCGATCAGTCACTCTATT
ATTATCGAAAGGCTAGACAcataaatggggggggggttttgtacttttac
ggtgtgacgggattggcccttttttagtacggtattacgggatttgacga
aaaaagagacgggaaaacggtattttaaaatcagacggtgacgggaTTTA
GGTACAattttgccctgtacaagccggtgtgactgtgttattattttttc
aattttcgggattccgggattcatcaaaaattttgacgggaaaacggtat
ttcgaacccctacaaacccccccatAAATCCACTCTCTCGGTCTTCATcc
atttatactcttttgaGTTATTTCACTGtagtattttttcttttcatagc
TGTATTCATACTATGTGGAATGTTGATGTTAGTCGGTTACCGTGAGTTTG
ACTTCTTAGAAGAATCCAGAATGTATCGCATGGGGTGGCGATTTGAAGAA
GTCCGAATTGACGAGGCATGGGGCTGGCCTTACTACCTAAGTTGGGGTAA
TTTTGCAATTTGTTTGGTCGGCTTTTTAGTATGTATGTACACGCATGTCA
CAGATACAAAATGGAGTAAAAGTTATGAAATGTTTAACATGAGAAATAAA
GCCAAGAAACTTTTGAGGTAATTTCTGATTGGAGGAACGAAGGATATTGT
GCGACTTAAACGAGAATCTTTAATGGAGTTTCCGAAGAAAAGGAATACGT
TTGTAAATAATTGAACACTGGagaagttattatttttttgaaatcatttg
gTAAAGGCATTACACGGAGTGGGCACTCACACCCGTGTGTCTCAGACTTA
CTGGGATTCCAGcccctggaaaatttggccaaaatttagtcctggtggaa
aaaataccctacattttTAGACCCCTTCTTtgaaattgactttgacttca
tctctatttaaaattcaatagaaaaaattgcactctaaaaccattCCAAA
CTGGATTTCTTAACCTGAGAACGATAacatttctatccccactgggattt
cgaaagaaatttttaaCCACACTGTGGGAAGTTCCACCACCCGGGGCCCG
GGGGTGTGAGACAGGGGTCTGTTTCTTATGAcattttttggtgaaaaact
aatctccttgtaaaatattttttaattactcAAATTCTTGAAACTAccca
ttattttcaattttttaatttttcttgaaaagcgaatttttaataaaaac
gggaggctcaatttttccaaaaacctTTAGTTTTGACTGTTTTGGGATGG
TAATGTAACGAGTTTTAAAAACTAGCCAGTTTATATGTTTGGCTGTAGTA
GCCAATCGCCAATCGATCAATTTATTTTTTCGGTCTCACCAGAAAATTAA
GTTGTTCGCCGTGATCAATTCCAAAAAGGCTTAAAAGATTTAAAAGTTGA
AAGCATCTGAAAGGTTGGTAAGTGTTCAGAGCAATCAACGAAAGTCTTTT
GGCtttttcgaaaatatatttttcatgtcaGATAATTAGAGAGAAATTTA
TACAGTGTTCTTGTATTTACAATAATATTTATGGTGGACACAGAAGGTAC
TCTTAGCAAGGAATATAACAAAGATTGCAGATTATTTTGCTTCGCCTGCC
GTTGCTTGGAAAATACAGAGTGGCTCCATAATGGGATATCTGTGGATAAT
GTGCATGGTAACCAGCTGATATTACGTATTTATATACAAAATCATTGTGT
GCAATCTTGGGTGgcacaaatttaatttttaaattttcaaagaaaacgtA
ACTTTTTCCAGTGCTGAAACttgaaattatgtttttattCAGTCGACCTT
TATTGCAGTCTTTTTAGCAGAAATGGAAGAAGCAACATGCTGCCAATTCT
TATGGATTAATGgtatatttaaaagtttttgctgTTGTGTATATGGTCTG
TTCAATTTTCGAAATGTATGAAGAAGTTGAATGGTGTTCTGATTCACTCT
ACATTTCTCAAAACTTGAACCAATCCTTCTTTAACTCTCATCTGACGATC
TATAGCATAAACCGATTCGTCCGGTCGGGAAACAATCGGTTTGCCATCAC
TCCATAACCATTCCGAAAcgggttgttgttgttgtgccGAAGCAGCGATT
AATCTTGAGTTGTTGTCTTGATCGTTGTGTTGTAAGATGCCAAGGAAAAT
ATGTTGTAACAAAAATTCATCTCTCAACTTCTTGTTAACTTCGAGCTCGT
TGACTTTTTCAAAGCCCATTTGGTGGAACACGTCATCATGTAAGACTTGT
ATAGTGAATTGCTTAGCCTTGAGAAGCTCCTTGAAATGTTGTTGAACATC
ACCAGTGACTTTAACGCATAATCCTTTGACGAAGCAAACTTTATCAACAA
CCATTTTGCGATTTTGTAACAAACCTCTGATTGGACTCTTCTTAAAAAGC
GAGTACATGACAGACAAATCTTCGTTGCTCTTCAATGTTTGCATGAGTTT
GATAGCAGAGTGCTTGATGAGGTCATCGATTACAGTGATAGTGAGGTTAG
GCCCATAACTTAAGGCTACTTTTACATGGGCATCGTTGATCTTGTGTGAA
ACCTATGGAAAAGACGAGAAAATGTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00070434TCONS_00070434Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00070434-proteinTCONS_00070434-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:187273..191298 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.19	4.1	4.82	5.15	41.51	30.46	35.58	35.9	26.15	27.53	18.57	13.4	11.59	10.96	8.03	10.32	4.8	5.25	1.33	1.81	3.53	2.62	4.55	5.03	4.46	4.69	16.59	13.2	1.01	0.68