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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070352 ID=TCONS_00070352|Name=TCONS_00070352|organism=Clytia hemisphaerica|type=transcript|length=1406bp
cgtttatttggcacctaagagtacacacacacacacagaattttcagatt
ctagctcaattgAAGCTAAAGGGATTATCAAATAGATTTTGGCTTTTAGA
GATATATacaaaagataaagaaaatctgaccatttaTTATCACAGCAACA
ACCTCTTCAAATAGCgatgaagaaaagaagaaataaatgcTTACCTATAA
ACGTTTCAGCAACTTCTGGATAGGCTGCAATAATTTCATCAagcaatttc
attttgaaggtGGAAATCAACTGAACTGGaaccttcttcttctttttcgc
tTTGTGAACTTGCCtcaaattgttgttttttgcCCATCGCACATGGGAAA
AAACCCGCATCCGTTGAAACGAGACATCTCCATAGCAAAGAAgatatttt
aatgacttaatttCGTCTACTAACTGATCAATCAATTCAATTCAAGTCAA
TTAACTTGCCAAAGATTACAGAACTTGTTATAAATGATTATAAAATGCTA
ATAATAAtggatatattttttgaaaaggtaaGTATTACTTAAATTGATAC
TAATCTCAAATCGCACATGTTTAAAAGAGTTTAATGTCAATTATTTGAAC
GAACAAAACAAttgcgccatttttgttttcgttttagTGGCGGGAAAATG
TAGAGAGAAAGGAACTTTGTAAAATGACAGTGTTCCAATGCCTATTATGT
TCTTCATTTCAAACTTTATTATTAAGACGTTTGATGAACCATTACAATGT
TGTTCATGCTAATGAATTGAATTTCAATGTTAAGTGCAATGTATCAGGCT
GTCCTTTGGTTTTCCGGCGTTATAACTCCTATTACAAACATGTTGTGAGA
AACCATACCAGTGTTTACAACCTTCCTAGTGATAACACACCTGggaatga
aaactttttaaacaatATTGAATCAGAACAGAATGACCATGAAGAAGAGA
TAGGAGTAGACGGTGAAGAAGAAAACATAGTAGAGGAAGAAATTTATGAT
AACGCTGAAGAAGGTGATGAACCCGACAGCTTTGATTCCTCTTCTAATGA
TGAAGATGAATTGGACCAGCAGAATCAAGAGTATGAAGATGATAATGTAA
GCTTTTGTCTCTATTTTGCAATCTTGGCAATTGGGATTGTCTGGGTGTTC
AAATACTGTTGACAACCCTCTGGCTCTGCCGCGGGcgcaccggacagtcc
ggtgttTTTGTCTGGTGTCAAAATATCCTTTGCTACACCGGACGTGGTAA
GCTCAGTGTTAAATGCCGGGAGCCCTAGGCACCGGACATGCGTCGGAAAA
AAAGTTAATGCGCACCGGACACATCGGACTTCGGACTTAAGTCCGGTGTT
GGGGTTGTCAGTTGTCCGGTGACGTATAAAGTATTCTTAACTGACGTCAA
ACATCC Run BLAST on NCBI protein sequence of TCONS_00070352-protein >TCONS_00070352-protein ID=TCONS_00070352-protein|Name=TCONS_00070352-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
MTVFQCLLCSSFQTLLLRRLMNHYNVVHANELNFNVKCNVSGCPLVFRRY
NSYYKHVVRNHTSVYNLPSDNTPGNENFLNNIESEQNDHEEEIGVDGEEE
NIVEEEIYDNAEEGDEPDSFDSSSNDEDELDQQNQEYEDDNVSFCLYFAI
LAIGIVWVFKYC Run BLAST on NCBI transcript from alignment at scaffold_54:7313..8718 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070352 ID=TCONS_00070352|Name=TCONS_00070352|organism=Clytia hemisphaerica|type=transcript|length=1406bp|location=Sequence derived from alignment at scaffold_54:7313..8718 (Clytia hemisphaerica)
GGATGTTTGACGTCAGTTAAGAATACTTTATACGTCACCGGACAACTGAC
AACCCCAACACCGGACTTAAGTCCGAAGTCCGATGTGTCCGGTGCGCATT
AACTTTTTTTCCGACGCATGTCCGGTGCCTAGGGCTCCCGGCATTTAACA
CTGAGCTTACCACGTCCGGTGTAGCAAAGGATATTTTGACACCAGACAAA
aacaccggactgtccggtgcgCCCGCGGCAGAGCCAGAGGGTTGTCAACA
GTATTTGAACACCCAGACAATCCCAATTGCCAAGATTGCAAAATAGAGAC
AAAAGCTTACATTATCATCTTCATACTCTTGATTCTGCTGGTCCAATTCA
TCTTCATCATTAGAAGAGGAATCAAAGCTGTCGGGTTCATCACCTTCTTC
AGCGTTATCATAAATTTCTTCCTCTACTATGTTTTCTTCTTCACCGTCTA
CTCCTATCTCTTCTTCATGGTCATTCTGTTCTGATTCAATattgtttaaa
aagttttcattccCAGGTGTGTTATCACTAGGAAGGTTGTAAACACTGGT
ATGGTTTCTCACAACATGTTTGTAATAGGAGTTATAACGCCGGAAAACCA
AAGGACAGCCTGATACATTGCACTTAACATTGAAATTCAATTCATTAGCA
TGAACAACATTGTAATGGTTCATCAAACGTCTTAATAATAAAGTTTGAAA
TGAAGAACATAATAGGCATTGGAACACTGTCATTTTACAAAGTTCCTTTC
TCTCTACATTTTCCCGCCActaaaacgaaaacaaaaatggcgcaaTTGTT
TTGTTCGTTCAAATAATTGACATTAAACTCTTTTAAACATGTGCGATTTG
AGATTAGTATCAATTTAAGTAATACttaccttttcaaaaaatatatccaT
TATTATTAGCATTTTATAATCATTTATAACAAGTTCTGTAATCTTTGGCA
AGTTAATTGACTTGAATTGAATTGATTGATCAGTTAGTAGACGaaattaa
gtcattaaaatatcTTCTTTGCTATGGAGATGTCTCGTTTCAACGGATGC
GGGTTTTTTCCCATGTGCGATGGgcaaaaaacaacaatttgaGGCAAGTT
CACAAagcgaaaaagaagaagaaggttCCAGTTCAGTTGATTTCCacctt
caaaatgaaattgctTGATGAAATTATTGCAGCCTATCCAGAAGTTGCTG
AAACGTTTATAGGTAAgcatttatttcttcttttcttcatcGCTATTTGA
AGAGGTTGTTGCTGTGATAAtaaatggtcagattttctttatcttttgtA
TATATCTCTAAAAGCCAAAATCTATTTGATAATCCCTTTAGCTTcaattg
agctagaatctgaaaattctgtgtgtgtgtgtgtactcttaggtgccaaa
taaacg Coding sequence (CDS) from alignment at scaffold_54:7313..8718 >TCONS_00070352 ID=TCONS_00070352|Name=TCONS_00070352|organism=Clytia hemisphaerica|type=CDS|length=489bp|location=Sequence derived from alignment at scaffold_54:7313..8718 (Clytia hemisphaerica)
TCAACAGTATTTGAACACCCAGACAATCCCAATTGCCAAGATTGCAAAAT
AGAGACAAAAGCTTACATTATCATCTTCATACTCTTGATTCTGCTGGTCC
AATTCATCTTCATCATTAGAAGAGGAATCAAAGCTGTCGGGTTCATCACC
TTCTTCAGCGTTATCATAAATTTCTTCCTCTACTATGTTTTCTTCTTCAC
CGTCTACTCCTATCTCTTCTTCATGGTCATTCTGTTCTGATTCAATattg
tttaaaaagttttcattccCAGGTGTGTTATCACTAGGAAGGTTGTAAAC
ACTGGTATGGTTTCTCACAACATGTTTGTAATAGGAGTTATAACGCCGGA
AAACCAAAGGACAGCCTGATACATTGCACTTAACATTGAAATTCAATTCA
TTAGCATGAACAACATTGTAATGGTTCATCAAACGTCTTAATAATAAAGT
TTGAAATGAAGAACATAATAGGCATTGGAACACTGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070352-exon-scaffold_54-1491911889:7313..8718 | TCONS_00070352-exon-scaffold_54-1491911889:7313..8718 | Clytia hemisphaerica | exon |
| TCONS_00070352-exon-scaffold_54-1510915933:7313..8718 | TCONS_00070352-exon-scaffold_54-1510915933:7313..8718 | Clytia hemisphaerica | exon |
| TCONS_00070352-exon-scaffold_54-1575043694:7313..8718 | TCONS_00070352-exon-scaffold_54-1575043694:7313..8718 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_54 | supercontig | scaffold_54:7313..8718 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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