TCONS_00070239 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070239
Unique NameTCONS_00070239
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1491

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070239 ID=TCONS_00070239|Name=TCONS_00070239|organism=Clytia hemisphaerica|type=transcript|length=1491bp
attttcatgtatttgagcaaaatatccaaaaattggcaaaatctgaGGAT
ATCACTTCCTCGACCTGCCTGAttcttacagaaaatggctcAAGTGTCTG
TTGAGGCATCATGAGAGAGAAAATTTGAACTCAAATGAAATCATAAGTCA
AATATTCAATTCAAGTCTtcaaatcaaactttcaaatcaaatttcaaact
caattttGATTCTACTTTCATGGACAGAACATTTACACCACATATATTTC
TGGCAAGTTGtttGAACTCCATCATCAAAAGTTACGAACACTTGTGTCTA
TTCATTTTCTGTTCGTCTACACCACGAGGCTGTATGAAGCAGGGATTCAG
AGCCGCCGGACGCCTGTCAATACTTCGAACGAATCCTGGGGGGTTTCAGG
GAGAGCTGTTGTGATATAAGAGTAGACAGTTTAAAGAATAACAAAAGGTT
TGGTTGTTCCAGCTGGTTCGAATTCTTAACGGCGTAATCAAAAGCCATCG
ATGCGAAAGCTGAGTCGACAAAACTGGCCTCTTATGGAGTCACTGGTTTA
ATGGTTACGTTTGGTTATGCTGTATTACTGCTCTCTTCAGCCCTTGccac
cgacaaaatttcttcctatgcttacctaactcctacgctcacttttccca
cGTGATACCGTTTCAGCCCGAATGGCGTGCATGCCAGTCTAACGAAATCC
TTGTTCCTGATCCAACAGCACGACACCACTTGATTCTGAATAACGAGCTG
ATCATTGCTGAGATGGTAGAGGAAGTGTGCAAAGACGTTAAAGTTGAACC
GATGCTATCAGAAATCCAGGAAGGCAAAGAAACGAGAGGAAACCAATCGA
AAAAAGCAAGACTCGACGTAAGCGCTGTTAGCTTTTAGACAAGGAGCCAA
CAGGCATTTTTCGACATAAGGGTCTTTGACACCTACAAGCCCAGAGATAC
TGAAACCAAGAGCTTGCAAAGTGCTACGAAACAAACGATAAAGAGAAGAA
AAGACAATACAACGAGAGAGTACTTCAAGTTGAAAATGGAACATTCGCTC
CCCTAGTCTTCTCCACGAATGGAGCAAGGGAAAAGAGTGCATTGTATTCT
ACGTCTAGCGGGATTAGTCGCATACAAACGGAAATGTAATGTCAATGAAA
TTACGCGTCCAATATTCGcgcaaaactttgtttttcgcTTCTTCGcgcaa
aactttgtttttcgcTTCTTCGCGCAACAATACGGTGCGTGCGAGGCTCG
CAGTCGCGAAAGGTTATCTTGTTAATAACCTTGAGATTGAGAGTTTGAAA
TGTTGTGAGCAGAATCTGTGATTGTAAACATTTTATATAGTGAAAACAAT
TATAACAGTATAAGTAGAAAATTACAGTGCGGGTAACGACCCAGGAAATT
CTAATTGTACATATAAAATCTTTTTGTGTTTACGTACGTGTAAATTTTTA
TTATGTAAGTgtagttttttttagaaatatataTGCTCgag
Run BLAST on NCBI

transcript from alignment at scaffold_516:193264..197086-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070239 ID=TCONS_00070239|Name=TCONS_00070239|organism=Clytia hemisphaerica|type=transcript|length=3823bp|location=Sequence derived from alignment at scaffold_516:193264..197086- (Clytia hemisphaerica)
ATTTTCATGTATTTGAGCAAAATATCCAAAAATTGGCAAAATCTGAGGAT
ATCACTTCCTCGACCTGCCTGATTCTTACAGAAAATGGCTCAAGTGTCTG
TTGAGGCATCATGAGAGAGAAAATTTGAACTCAAATGAAATCATAAGTCA
AATATTCAATTCAAGTCTTCAAATCAAACTTTCAAATCAAATTTCAAACT
CAATTTTGATTCTACTTTCATGGACAGAACATTTACACCACATATATTTC
TGGCAAGTTGGTAAGAATTCATTTAATTTATTAACTTAGATTTCTTTTAT
TTTCCTCTAAAATACTTTGTCAATATTTTCATTATTCTTCATTTGTCTCA
CTTTGTCACATAGATTAAATCTTGTCATTTTTTTATTCATTCAGTTTGAA
CTCCATCATCAAAAGTTACGAACACTTGTGTCTATTCATTTTCTGTTCGT
CTACACCACGAGGCTGTATGAAGCAGGGATTCAGAGCCGCCGGACGCCTG
TCAATACTTCGAACGAATCCTGGGGGGTTTCAGGGAGAGCTGTTGTGATA
TAAGAGTAGACAGTTTAAAGAATAACAAAAGGTTTGGTTGTTCCAGCTGG
TTCGAATTCTTAACGGCGTAATCAAAAGCCATCGATGCGAAAGCTGAGTC
GACAAAACTGGCCTCTTATGGAGTCACTGGTTTAATGGTTACGTTTGGTT
ATGCTGTATTACTGCTCTCTTCAGCCCTTGCCACCGACAAAATTTCTTCC
TATGCTTACCTAACTCCTACGCTCACTTTTCCCACGTGATACCGTTTCAG
CCCGAATGGCGTGCATGCCAGTCTAACGAAATCCTTGTTCCTGATCCAAC
AGCACGACACCACTTGATTCTGTATGTACAATTGCTATCACGAATTTTAC
AAAACACTAAGCCCACTTGCAATGCTCTATAATAAATTGATCCCGTCGAA
TGTTTGGAATGTTTTTAGAAGAAACAGAATAGAAGCTTTATTTTAATTTT
TGAAAACTTGAAATTTATTTAAACGTTCACTCACCCCGGGAAGGAGGGGG
TACTTAGGTAAAATGGGTTCTGGGTATGTACGAGCCAGGTACCGGGTACC
AGAGGCCAAGTTTTCATCAGAGAAAATGTTGACATTTATTCAAGCTCAAC
CATGTCCCCGTGTATCCCAGGCTTTTGTACGTTACTGATTGACCGCCAGA
AAGTACCCTCGTGTTGGCTGATGCGAGCTTCCCCTTTCAGAAGAGGGGGA
CTTCTCAAAACGATAGGTATCATAAAATATTCTGACGTTATACTGGAATG
ATTACACAGACAATGTATATCTATAGGGTATATCTAACTAGCAAGCACCT
AACTAAAAACCAGGATTTTACATCTCGTCTCTTAGTGAGTTCCACTTTGA
CAATTTTCAAAAAATAGAAGCCTTTCAAGTGCTTTGATGCAAATTCGATT
TAAGCATCCAGCGAGGACCTTTTTTTAAACATCTGTTTCCCAGGCATAAC
CTTCCTGGAAAATTTGATCTGCTGACCAAAAGCATCGAAAATCTTATTCC
TAGAAATGAAGATCTGTTTCTCCTCGAAACCTAAATTTTTAGTATTTAGT
ATTTTAAAGTATCTTCCCTAGAAAATTTGGTCTGACAATTTTCAGAATTA
AAATTTTGATCTGTTCTCCCGGGTTGGTCTAAAAAGCAGGGTAGCCAATT
GGGGTAGCCAATTGGGCTAGGTTGTGGGGTACCTAAATATTTTACAGACC
AGAATAGAAATACCGAAAATGAATGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTTTCAAAAGACCTTTTGTACCTATTATAAG
CTGCCATATTTAAAAATTTTGAAAGGAATTAATTGTTTGAAACATCTAAA
CATGATTTAAATTAAACAAGAGATTCAATAACAAAGGATTGTTAAGATAT
GACAAGATTAGAGATCATATGGCTTAAAGGCGATTCCAAAGCTATTATCA
TCGAATTACAGCTTCACGAAAATAACAATTAAAAACATAAATAAAATCTA
AATCTAAAATATTGAAAACTGTTTTGTATATATTTTTTATTCCGGTCTGT
AAATTTTCAATCGAAGCCAAGAAGGAAGACAAAATGGCGCCAGGTCTCTT
GAGAAGTAACAAAGTTCAGTACATTTGGCAAAAAGGCTATTGTGGCTGAA
GTTCGAAAGGAATCTTAAATTTTACTACATGGAATCATTAACAAGATGTT
GTAATAGTTATTTCCACATTAAACAGGTTTCAGATTTCAAAAGTTTAGGC
AAAAAGAGGTACCCCATAACCTAGCCCAATTGGCTACCCCATTGGCTACC
CTGCTTTTTAGACCAACCCTGTTCTCCCAAGCTTGTAAGGAGTAAGATAT
CTGTTTCCCTCTCCTGGAAATTTTCATCTGTTTCCCTTGCTTTTTGTGAT
TGATATCTGTTTTCCCCCAGAAAGTTCAATCTGTTTCTAATGCAATATCA
TCTTTTTGGAAATATATATCTGTTTCCCAATTTATTATGTCATCTCCTAG
AAATATTGATCTGTTTCTCTCTGATGACGTCATCAGCTGGAGCGGGGAAA
CAGATAGTTTTAAGGAAAAGGTCTTTCCTAGAAAATCAGACCTGTTTCCC
ATTTTTCAAAAAAAGGCACTCTCCTGGAAAAGGGAAACAGATATTTCGGG
GAAATGGGCTCGTTGGCTGCTTCTGGGAATAGACGTTAATTGCGTAGAAA
AAACGCGGGTGACGTCTAGTATAGGCTAATATCTAACGTGCGTTATCAGT
AAGTTGGTGCCAATATCGATGTCGCGCATGCTCTCTATCATGTAAAAAAG
GAGGCTTTGTCCCTCTTAGGAATAACGAGCTGATCATTGCTGAGATGGTA
GAGGAAGTGTGCAAAGACGTTAAAGTTGAACCGATGCTATCAGAAATCCA
GGAAGGCAAAGAAACGAGAGGAAACCAATCGAAAAAAGCAAGACTCGACG
TAAGCGCTGTTAGCTTTTAGACAAGGAGCCAACAGGCATTTTTCGACATA
AGGGTCTTTGACACCTACAAGCCCAGAGATACTGAAACCAAGAGCTTGCA
AAGTGCTACGAAACAAACGATAAAGAGAAGAAAAGACAATACAACGAGAG
AGTACTTCAAGTTGAAAATGGAACATTCGCTCCCCTAGTCTTCTCCACGA
ATGGAGCAAGGGAAAAGAGTGCATTGTATTCTACGTCTAGCGGGATTAGT
CGCATACAAACGGAAATGTAATGTCAATGAAATTACGCGTCCAATATTCG
CGCAAAACTTTGTTTTTCGCTTCTTCGCGCAAAACTTTGTTTTTCGCTTC
TTCGCGCAACAATACGGTGCGTGCGAGGCTCGCAGTCGCGAAAGGTTATC
TTGTTAATAACCTTGAGATTGAGAGTTTGAAATGTTGTGAGCAGAATCTG
TGATTGTAAACATTTTATATAGTGAAAACAATTATAACAGTATAAGTAGA
AAATTACAGTGCGGGTAACGACCCAGGAAATTCTAATTGTACATATAAAA
TCTTTTTGTGTTTACGTACGTGTAAATTTTTATTATGTAAGTGTAGTTTT
TTTTAGAAATATATATGCTCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043737XLOC_043737Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070239-exon-scaffold_516-1575043694:196827..197086TCONS_00070239-exon-scaffold_516-1575043694:196827..197086Clytia hemisphaericaexon
TCONS_00070239-exon-scaffold_516-1575043694:196216..196692TCONS_00070239-exon-scaffold_516-1575043694:196216..196692Clytia hemisphaericaexon
TCONS_00070239-exon-scaffold_516-1575043694:193264..194017TCONS_00070239-exon-scaffold_516-1575043694:193264..194017Clytia hemisphaericaexon
TCONS_00070239-exon-scaffold_516-1510915933:196827..197086TCONS_00070239-exon-scaffold_516-1510915933:196827..197086Clytia hemisphaericaexon
TCONS_00070239-exon-scaffold_516-1510915933:196216..196692TCONS_00070239-exon-scaffold_516-1510915933:196216..196692Clytia hemisphaericaexon
TCONS_00070239-exon-scaffold_516-1510915933:193264..194017TCONS_00070239-exon-scaffold_516-1510915933:193264..194017Clytia hemisphaericaexon
TCONS_00070239-exon-scaffold_516-1491911889:196827..197086TCONS_00070239-exon-scaffold_516-1491911889:196827..197086Clytia hemisphaericaexon
TCONS_00070239-exon-scaffold_516-1491911889:196216..196692TCONS_00070239-exon-scaffold_516-1491911889:196216..196692Clytia hemisphaericaexon
TCONS_00070239-exon-scaffold_516-1491911889:193264..194017TCONS_00070239-exon-scaffold_516-1491911889:193264..194017Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_516supercontigscaffold_516:193264..197086 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0720082	0	0	0	0	0	0	0.16682	0.173454	0.0456789	0	0	0	0.0178522	0	0.0973158	0	0	0	0	0.19961	0	0	0	0	0	0	0	1.86258e-05
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070239 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top