TCONS_00068902 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068902
Unique NameTCONS_00068902
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3176

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068902 ID=TCONS_00068902|Name=TCONS_00068902|organism=Clytia hemisphaerica|type=transcript|length=3176bp
NACCAGGAAACCCAGGTTTGATGGGAGAACAAGGCGTACCAGGAGCTCCA
GGATTACCAGGATCCCCCGGAAACAATGGTAAACCAGGAGAACGTGGAGA
TCCAGGACAAGATGGAGGACCAGGAGATCAGGGACCACCAGGATCACCAG
GAAACCCAGGTGCCAGAGGACGTGAAGGAACTCCAGGACGACCTGGCCGA
CGTGGAACACCAGGACCTAATGGAAAACCAGGAGCACCAGGAGCAGCAGG
ACCAAAAGGATCAGACGGTCGACCAGGAGAACGAGGTCCAGAAGGATCTT
CAGGTCCACGTGGAGTCAATGGAGCACGTGGAAGCCCAGGTCCAGATGGA
GCTGCAGGACTTGATGGAGCTCAAGGACCACCAGGTGACATTGGTGCACC
AGGAAAAACCGGAGCCTCAGGAGTACCAGGACCTGTCGGACTTAGAGGAC
CAACTGGACCACCAGGAGTTCGTGGAGCTAAAGGATCATCAGGAGATTCT
GGTGATGATGGTGAACAAGGACCTGCTGGTACCGCTGGACAACCTGGTCT
TGTTGGACCAATCGGAGAAATTGGAGAACGTGGACAAGTTGGAGAAGTCG
GAGAAATCGGAGAGACTGGTCCACAAGGTATGCCAGGACCAAGAGGTCCA
CCTGGACCACAAGGACCGGAAGGCCCAGAAGGAGCCCCAGGACCAATGGG
TAAAGACGGAAACAAAGGACCTGTTGGAGACCCAGGAAATGCTGGCAGAC
CTGGCAAACAAGGAGAAAGTGGAAAGCCAGGAAAAGACGGTGTTCCAGGA
AACCCAGGAACTGCTGGTAAACAAGGACCAAACGGACTTTCAGGATCATC
AGGACCACAAGGACCACCAGGAGAACAAGGTCAGCGAGGACCTCCAGGAC
GAATTGGTGTTGTTGGAAATAATGGACCTAAAGGTTACGTTGGCCCTGAC
GGTTTGAATGGATTAACAGGTAAACGTGGATCACGTGGTAAAGAAGGACC
TCAAGGACCCACTGGTGTCATTGGCCGTGATGGTCGCGATGGAAAGCCAG
GATACAACGGAACTGACGGTGATAACGGTGGTGTTGGACCTAAAGGAGAT
TCTGGTGAACAAGGAGATAATGGAGCACCAGGATCTACTGGTGAGAATGG
TGATGTTGGAGAGCCAGGAGTCGGTGGTGAAGATGGACCACAAGGACCTA
AAGGACCCAATGGTAACCCTGGAGCACCAGGTGCCCGTGGAAAGACAGGA
CCTAAAGGAGACCGTGGTGGTAAAGGAAAGACTGGTTCTGATGGACGTGG
TGGCTCCAAAGGACAGAAAGGAAACATGGGACGTTATGGTATGCAAGGAC
CACCTGGTGATGCAGGAGAGAAAGGAGATGAAGGCCCACAAGGAGAACGT
GGACACCATGGACCACAGGGAAGCCCTGGAGATTCTGGACCAAACGGACC
AGATGGCGAAGAAGGATCCAAAGGATCTCTGGGAAACCAAGGACAAATTG
GTAACGAAGGTATCCTTGGTGCTCCAGGACCTGGAGGAAGTCCAGGAAGT
GCTGGAAATCCAGGTCCCCCAGGTCCACCAGGACCTCCAGGAGATATGTC
TGGTGCATTAGCCGGCAACTTCTGGGATTACTTGAATACTGGACATAACA
TGAAAGGTCCTGGTTATTACAGACAACGAAGATCTGCTGAAAACCACAAC
GATATTGAATCCATCTTCAAAGAGAACTACAGGGTATTCCAAAACTTCGA
CAACTTGTGGAATCGTGTTATGGATGATATTGTCAACAAAAAATCTTTGG
GAACCAAAGCTAACCCAGCAACCACGTGTGCTGATCTCTTCCGAACAAGA
AAGGGATTATCATCAGGCGACTACTGGATTGATCCAAATGAAGGATCATC
ACACGACGCCATTTTGGTTCATTGCAATGCCACCAATTATGAAACATGTG
TTTATGCTAAACAACCGGAAGCCGATAAAGATGTTTGGTTCGCTGGAAAA
CCATCTTTCTTATGGGCTTTCAAAGAATACATGGATGAACCAGAAGGCAT
TTCATATGCTGCCGATTTGGTACAATTGAAAATGATGAGATTGTTAAGTA
ACACCGTTCGACAGAATATTACACTTCATTGTAAAAACTCTAATGGAGAT
ATGAGCATTATGACGGATGAGAATAAAGAATATGAATTCAATTCATTACC
ACGTGGTATGAGATCAAAAACCATCTCTAATGGATGCTCGatcaAAGATA
ACCAATGGCATAGTCGCGTTGTTGAAATCTTTTCCGACAATCTCCGTGGA
TTCCCAGTTCAAGATATTGGAAAATTCATTGCTACTGAAACTGAACAAGT
TGGAGTCACCGTAGGACCTGTTTGTTTCAGTTAGAAGAATGGCATTAAAT
TTTTGATCATCTGGAAGATCTTTTTGATAGAAGAACAGAGGCAGTTTGGA
GAAGAATAGACATTAGATTGAACCATTTCCTAACCATTGCAACGAGTAAA
GGAAAAATTTATCACATACACTGCTTTCACAACTACTGGGGTTGCGTCGA
AACATCTTGATACAACAAACCCTTCAAAACGTTTGATGAACACTCCACAT
ATCACAATTTtagatttcaatcaaaaattttagattaacagttttttata
gaaattttataataaactagaatttttttccatttaataaCATCTAATCG
TAATGTGACcagattattttatttttatgcttcattgaaaatctcttgtt
tgttctttttccaaaaaagactGCCACTATCTTCTTGAAATAAGATTTTA
CTGTCATTATTTATAATTTCAACTTAAAAGAGGAaacaataaaagagaaa
acaatTGCTTGCGAGGGAGCTTACACCACACCCCTTTGAAATGTATTTAC
AGTATGACACGGCTTCAAGtactttttttactcttttattcaagaaaaag
cTAAAAGATAATTGAAAGAGTTTGTCGTCGTatatttgtgagtattttga
cTTTTACCTCTTGTACATACGTTATTTACtatgaacaataaaaaaattaa
attggtACACCTTTTATAGGGAAATAATAactataaaatatgaaaaaatN
attgcttttgtaaacaaaaaaatagcaaagttgatttcgagcaaatttgc
aatagaatgttttgattataaaatag
Run BLAST on NCBI

transcript from alignment at scaffold_49:766687..773433-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068902 ID=TCONS_00068902|Name=TCONS_00068902|organism=Clytia hemisphaerica|type=transcript|length=6747bp|location=Sequence derived from alignment at scaffold_49:766687..773433- (Clytia hemisphaerica)
NACCAGGAAACCCAGGTTTGATGGTAAGTGATATTTTGCTTTTGATTTAT
ATTTTGTACCAAAGTTTCGATATTTTGTAACCGAGTTATTTGATTTGACA
AGATTGTTTGGGTGATTTAATTCTCCATCGTGGAATTTATTTAACCCACC
TTTAGGAAATTAATTACATAAATTGAAGCACTCGCCAGGTTCGAGCATTT
TTCTTCCTAAATTTACTACTTACTAATTACTACTCTCTTTAGACTAACCA
TCGTATTTTCTCGAACTATAAACTCCTAAGAAATCAATAAAATAGTGAGA
ATTATTTGAAGAAAATTATTCTAAAGGCACCTACTAAATTATTTTGATAT
CACTCCATTCTAGGGAGAACAAGGCGTACCAGGAGCTCCAGGATTACCAG
GATCCCCCGGAAACAATGGTAAACCAGGAGAACGTGGAGATCCAGGACAA
GATGGAGGACCAGGAGATCAGGGACCACCAGGATCACCAGGAAACCCAGG
TGCCAGAGGACGTGAAGGAACTCCAGGACGACCTGGCCGACGTGGAACAC
CAGGACCTAATGGAAAACCAGTAAGAAAGAACTCTAATAATAATTTGTGA
AAATCATGTCTTTTGTCCAAGGCTGATTATTGAATCAAACAAAACACACA
TCAATTGAATTACTGTAGAGAATCATTTAGTTGTTCGAGAAACTGTTAAA
AATTGCCAGAAATTGATGATCCTATTAAGTAGAACACCAATTACAATAAT
CGTACAAATAGTCCCTTGTAAAAAATTATCATCAAAATAGACTTTTCAAT
AAAGTAATCAACCATTCTTCTTTCTCAAGGGAGCACCAGGAGCAGCAGGA
CCAAAAGGATCAGACGGTCGACCAGGAGAACGAGGTCCAGAAGGATCTTC
AGGTCCACGTGGAGTCAATGGAGCACGTGGAAGCCCAGTAAGTTGTCGCT
GTCTTTTTTCTATAGAAAAGTCTTATCAATGAAGTGAGATTACAATTAAC
TCGAACCTCTAAAGAACACATTTACTTTTTTTTTTGGATTAATCTTAAAA
TTAAGTTATCATTGTCCAAACTCGTACACAGTCCCTTAGTTCACTTTTCA
AAGATTCTGATAGCACTCACGCGGCAAGTGGCTCTGGGTACAAGATTGGT
CACTGTCCGTTTTCTAGTTAAACCAACGATGTAAGACGATAATAAGTCTC
TCTGTAAACTGTAGTTTCAAAGCCATGCCACTCAAATCTCATCTTCAGCT
TGCAAGCCCTATTTGACTGGAATATTCTTTCGTATTTCTCTTAGGGTCCA
GATGGAGCTGCAGGACTTGATGGAGCTCAAGGACCACCAGGTGACATTGG
TGCACCAGGAAAAACCGGAGCCTCAGGAGTACCAGGACCTGTCGGACTTA
GAGTAAGTATTAACCAGTATTGAGCGCAGAGTGCTTTTGTTAATGAGTAA
TTATTGAATGGATAAAATGTGGTATAAATGCATCGATGTAAGTAAGTGTT
GAATCGAATCTGAAGTTGGATGATATAAAATTAAAAGCATCTTGAAAATT
AATACATAAGTTTCAAACATTAAGTTTGAATAAAAACAAAAAAAGATTAA
ATCGTTGTTATAATGGTTGATTCTTTTTCTTTCCAATGATAGGGACCAAC
TGGACCACCAGGAGTTCGTGGAGCTAAAGGATCATCAGGAGATTCTGGTG
ATGATGGTGAACAAGGACCTGCTGGTACCGCTGGACAACCTGGTCTTGTT
GTAAGTAAAGTCTCCTTTGTTGCTATTAGAAAAAGACTTGCATTTTCTAA
TAATTATATTTCGTTGTTCTTTTGGTGCTGCGAATACACCATGTAAGAAA
TACTATAATTCAGTAGGTTAGACAACAAAAGATGACATAAAATAATAAAA
TAGGTGAAACATAAAAAGCTAAAAAAGGTACACAAAATAAAAAAGGTCGT
TTATAGCTGGAAGAATATTTCGACCATTGACGTGTCTTTATTTTGACATG
TAAGATATTGCAAATGATAATGTCATTAAAATAAATCAAATCACAATTTT
TCTAGGGACCAATCGGAGAAATTGGAGAACGTGGACAAGTTGGAGAAGTC
GGAGAAATCGGAGAGACTGGTCCACAAGGTATGCCAGGACCAAGAGGTCC
ACCTGGACCACAAGGACCGGAAGGCCCAGAAGGAGCCCCAGGACCAATGG
GTAAAGACGGAAACAAAGGACCTGTTGGAGACCCAGGAAATGCTGGCAGA
CCTGGCAAACAAGGAGAAAGTGGAAAGCCAGGAAAAGACGGTGTTCCAGG
AAACCCAGGAACTGCTGGTAAACAAGGACCAAACGGACTTTCAGGATCAT
CAGGACCACAAGGACCACCAGGAGAACAAGGTCAGCGAGGACCTCCAGGA
CGAATTGGTGTTGTTGGAAATAATGGACCTAAAGGTTACGTTGGCCCTGA
CGGTTTGAATGGATTAACAGGTAAACGTGGATCACGTGGTAAAGAAGGAC
CTCAAGGACCCACTGGTGTCATTGGCCGTGATGGTCGCGATGGAAAGCCA
GGATACAACGGAACTGACGGTGATAACGGTGGTGTTGGACCTAAAGGAGA
TTCTGGTGAACAAGGAGATAATGGAGCACCAGGATCTACTGGTGAGAATG
GTGATGTTGGAGAGCCAGGAGTCGGTGGTGAAGATGGACCACAAGGACCT
AAAGGACCCAATGGTAACCCTGGAGCACCAGGTGCCCGTGGAAAGACAGG
ACCTAAAGGAGACCGTGGTGGTAAAGGAAAGACTGGTTCTGATGGACGTG
GTGGCTCCAAAGGACAGAAAGGAAACATGGGACGTTATGGTATGCAAGGA
CCACCTGGTGATGCAGGAGAGAAAGGAGATGAAGGCCCACAAGGAGAACG
TGGACACCATGGACCACAGGTACTTTTAACTTTGAGTTGATTCTTTGGTG
ATAGGGTCAATATTTTAAGACAGTTTTGGATGATCGAAAATTTACAGTAT
TCTAAATCTAATTTTAGATCATTCAACTTTTTTATAGACTTAAACGTTAG
AGAATAGAATACGTATTTGCTCTATATAATAATAGAGAGACAAACAAAGT
CGTTATAGCCATTCATTTTCACTTATATTGAAATACTGGAGATACATCGA
GATAAAAGGAAATAAAAATCTTCTCTCTTTATATTAGAAAGAAGACTTAT
CTAATAACATTTTTTCTCCATGTATAGGGAAGCCCTGGAGATTCTGGACC
AAACGGACCAGATGGCGAAGAAGGATCCAAAGGATCTCTGGGAAACCAAG
GACAAATTGGTAACGAAGGTATCCTTGGTGCTCCAGGACCTGGAGGAAGT
CCAGGAAGTGCTGGAAATCCAGGTCCCCCAGGTCCACCAGGACCTCCAGG
AGATATGTCTGGTGCATTAGCCGGCAACTTCTGGGATTACTTGAATACTG
GACATAACATGAAAGGTCCTGGTTATTACAGACAACGAAGATCTGCTGAA
AACCACAACGATATTGAATCCATCTTCAAAGAGGTATAATATTTTCTCTT
TTATTAACATGATACCTAGGATAAAAATTGGGTAATAAATCCATTTCTGA
TCAAGTGAACACATGGAGGATAGGATACACGTAACTCAAGCTGTCTAGAA
GTTGCTTTCCGATCTTGCAATCTTATAGTCATCAAAGTTAAACCCTTACT
AATGTTTTACAAGATTTGTATTAAGTAAAAGCATCACGATTTTTTTCTTT
TCCCAACAGAACTACAGGGTATTCCAAAACTTCGACAACTTGTGGAATCG
TGTTATGGATGATATTGTCAACAAAAAATCTTTGGGAACCAAAGCTAACC
CAGCAACCACGTGTGCTGATCTCTTCCGAACAAGAAAGGGATTATCATCA
GGTATGTGTGGAAGCTAGTCTACTCTCGATTTACTAGCTCTAAAATGAAG
CTCCGTATTTTGATGTCAAAGCGATCACCTATTATATTATTCAAGGAAAG
ATTTGAGTTATTGACTTCGATTAAATGTCCTTCTTCTCAAGGAAGAAAGA
GTCGGCTGCTGTCTTAAAAACAAAGAATTCCCCATTTTAGTTATTTATAA
CTTATGATACCTAGGCCATTTCACAGTCGCAAAGCGTAATGGGTAATCAG
GACCACTGTGCTAATAACGACTTACTATTGGACAAAAGTTTTGAACATTT
TTGCGTCTAGCAAACCGGAAGTCGTTATTAGAGCGCAACCAGTCCTGATT
ACCCATGATTCATTTCGACTGTGAAATGGCATATGCCACCCATTCTAATT
TCAGGCGACTACTGGATTGATCCAAATGAAGGATCATCACACGACGCCAT
TTTGGTTCATTGCAATGCCACCAATTATGAAACATGTGTTTATGCTAAAC
AACCGGAAGCCGATAAAGATGTTTGGTTCGCTGGAAAACCATCTTTCTTA
TGGGCTTTCAAAGAATACATGGATGAACCAGAAGGCGTAAGTATACAATA
GTTGGGTAGAGCATTATTGGTAGAGCATTCTCCTCGCAGCTTCAATCTCT
GTTTACTGCCAACTCGAAAAATATCAATAAAGCTTATATGGTTATGTGTG
ATCTCCGTGCTAAGAGTTGAGAAACTTTCTGAGGTGGAATAGAAAATAAA
TTGTTCAAGTATCGGGAACAAGTGCTTCCAAATAGTTTGTAGCTTGCATA
TCTTCAAAGTCTCAAGAGCAAAAAGGAATGACGAAAATACTAGAAAACGA
GGGCTGACTCTTGACTTTTTATCAATCAACAAAGCATAAATTTTTCAACA
AACTGTAATGAATTCAATCGAATGATAAACAGACAAACGAGTATTTTTAC
AGTTGACTGTCACTCTAATTTGATCTTTAACTGAGGAAACATTTTCTTTG
AATTAGAGAGAGATTCTAATTACAGAGTAATTGAAACAACTTTCCAGCTG
AGAGGAGCAATATTTTAGTTCGAATTAGAGAAAGATTCGAATGATAGAGA
TTCGAATTAGAGAGAGTTGACTGTATCAAATTTTCTTTCCCTTTTTAGAT
TTCATATGCTGCCGATTTGGTACAATTGAAAATGATGAGATTGTTAAGTA
ACACCGTTCGACAGAATATTACACTTCATTGTAAAAACTCTAATGGAGAT
ATGAGCATTATGACGGATGAGAATAAAGAATATGAATTCAATTCATTACC
ACGTGGTATGAGATCAAAAACCATCTCTAATGGATGCTCGGTAAGATCTG
TTCTCGATTTCGTTCCCAGTGAATTATTAGCTTTTCGTAAGAGGGCGCGG
GCTCCCGTAAGGCAACACCAGGGTATTCTCTGATGCCTAGCAGTAAAGTA
AATAAAGCCTGGGATACATGGGGATGGAAGAGATAGGAGGGTGCTAGAAA
TAATCTTGTCAAGAAATCTAATCTTTTTTGAAGACTTAGTTAAGTTTAAG
AATTCCTATCATCATTAAATTCAGAATAAGGTTGGAAAAAACTCTTTTGA
AATAGATATAATATACGTTTGGTATTACTCTACCGTCGTACAGAGAATTT
TTGCGAATCGTGCCGTTAAATTAAAGACGATGATGTTATAGGCACCTACC
TATCACAAAACAAGCCATTTTATCTGATAAACAAAAAGTAAGAGGCGAAA
CTTTATTGAGCAAAAGCCAACTAACACAAATCTATAAATCCTACATAATT
GCACCAGACATATCTTCTGGAGGTTCTTTTGGACCGGGAGGACCTGGATT
TCCAGCACTTCCTGGACTTCCTATTGAGAAATAAATAATGTCAATTCTTT
TTCTTTTTCAGATCAAAGATAACCAATGGCATAGTCGCGTTGTTGAAATC
TTTTCCGACAATCTCCGTGGATTCCCAGTTCAAGATATTGGAAAATTCAT
TGCTACTGAAACTGAACAAGTTGGAGTCACCGTAGGACCTGTTTGTTTCA
GTTAGAAGAATGGCATTAAATTTTTGATCATCTGGAAGATCTTTTTGATA
GAAGAACAGAGGCAGTTTGGAGAAGAATAGACATTAGATTGAACCATTTC
CTAACCATTGCAACGAGTAAAGGAAAAATTTATCACATACACTGCTTTCA
CAACTACTGGGGTTGCGTCGAAACATCTTGATACAACAAACCCTTCAAAA
CGTTTGATGAACACTCCACATATCACAATTTTAGATTTCAATCAAAAATT
TTAGATTAACAGTTTTTTATAGAAATTTTATAATAAACTAGAATTTTTTT
CCATTTAATAACATCTAATCGTAATGTGACCAGATTATTTTATTTTTATG
CTTCATTGAAAATCTCTTGTTTGTTCTTTTTCCAAAAAAGACTGCCACTA
TCTTCTTGAAATAAGATTTTACTGTCATTATTTATAATTTCAACTTAAAA
GAGGAAACAATAAAAGAGAAAACAATTGCTTGCGAGGGAGCTTACACCAC
ACCCCTTTGAAATGTATTTACAGTATGACACGGCTTCAAGTACTTTTTTT
ACTCTTTTATTCAAGAAAAAGCTAAAAGATAATTGAAAGAGTTTGTCGTC
GTATATTTGTGAGTATTTTGACTTTTACCTCTTGTACATACGTTATTTAC
TATGAACAATAAAAAAATTAAATTGGTACACCTTTTATAGGGAAATAATA
ACTATAAAATATGAAAAAATNATTGCTTTTGTAAACAAAAAAATAGCAAA
GTTGATTTCGAGCAAATTTGCAATAGAATGTTTTGATTATAAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042930XLOC_042930Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068902-exon-scaffold_49-1575043694:773411..773433TCONS_00068902-exon-scaffold_49-1575043694:773411..773433Clytia hemisphaericaexon
TCONS_00068902-exon-scaffold_49-1575043694:772864..773070TCONS_00068902-exon-scaffold_49-1575043694:772864..773070Clytia hemisphaericaexon
TCONS_00068902-exon-scaffold_49-1575043694:772497..772604TCONS_00068902-exon-scaffold_49-1575043694:772497..772604Clytia hemisphaericaexon
TCONS_00068902-exon-scaffold_49-1575043694:772032..772139TCONS_00068902-exon-scaffold_49-1575043694:772032..772139Clytia hemisphaericaexon
TCONS_00068902-exon-scaffold_49-1575043694:771684..771791TCONS_00068902-exon-scaffold_49-1575043694:771684..771791Clytia hemisphaericaexon
TCONS_00068902-exon-scaffold_49-1575043694:770515..771378TCONS_00068902-exon-scaffold_49-1575043694:770515..771378Clytia hemisphaericaexon
TCONS_00068902-exon-scaffold_49-1575043694:769901..770206TCONS_00068902-exon-scaffold_49-1575043694:769901..770206Clytia hemisphaericaexon
TCONS_00068902-exon-scaffold_49-1575043694:769533..769674TCONS_00068902-exon-scaffold_49-1575043694:769533..769674Clytia hemisphaericaexon
TCONS_00068902-exon-scaffold_49-1575043694:768948..769129TCONS_00068902-exon-scaffold_49-1575043694:768948..769129Clytia hemisphaericaexon
TCONS_00068902-exon-scaffold_49-1575043694:768194..768385TCONS_00068902-exon-scaffold_49-1575043694:768194..768385Clytia hemisphaericaexon
TCONS_00068902-exon-scaffold_49-1575043694:766687..767622TCONS_00068902-exon-scaffold_49-1575043694:766687..767622Clytia hemisphaericaexon
TCONS_00068902-exon-scaffold_49-1510915933:773411..773433TCONS_00068902-exon-scaffold_49-1510915933:773411..773433Clytia hemisphaericaexon
TCONS_00068902-exon-scaffold_49-1510915933:772864..773070TCONS_00068902-exon-scaffold_49-1510915933:772864..773070Clytia hemisphaericaexon
TCONS_00068902-exon-scaffold_49-1510915933:772497..772604TCONS_00068902-exon-scaffold_49-1510915933:772497..772604Clytia hemisphaericaexon
TCONS_00068902-exon-scaffold_49-1510915933:772032..772139TCONS_00068902-exon-scaffold_49-1510915933:772032..772139Clytia hemisphaericaexon
TCONS_00068902-exon-scaffold_49-1510915933:771684..771791TCONS_00068902-exon-scaffold_49-1510915933:771684..771791Clytia hemisphaericaexon
TCONS_00068902-exon-scaffold_49-1510915933:770515..771378TCONS_00068902-exon-scaffold_49-1510915933:770515..771378Clytia hemisphaericaexon
TCONS_00068902-exon-scaffold_49-1510915933:769901..770206TCONS_00068902-exon-scaffold_49-1510915933:769901..770206Clytia hemisphaericaexon
TCONS_00068902-exon-scaffold_49-1510915933:769533..769674TCONS_00068902-exon-scaffold_49-1510915933:769533..769674Clytia hemisphaericaexon
TCONS_00068902-exon-scaffold_49-1510915933:768948..769129TCONS_00068902-exon-scaffold_49-1510915933:768948..769129Clytia hemisphaericaexon
TCONS_00068902-exon-scaffold_49-1510915933:768194..768385TCONS_00068902-exon-scaffold_49-1510915933:768194..768385Clytia hemisphaericaexon
TCONS_00068902-exon-scaffold_49-1510915933:766687..767622TCONS_00068902-exon-scaffold_49-1510915933:766687..767622Clytia hemisphaericaexon
TCONS_00068902-exon-scaffold_49-1491911889:773411..773433TCONS_00068902-exon-scaffold_49-1491911889:773411..773433Clytia hemisphaericaexon
TCONS_00068902-exon-scaffold_49-1491911889:772864..773070TCONS_00068902-exon-scaffold_49-1491911889:772864..773070Clytia hemisphaericaexon
TCONS_00068902-exon-scaffold_49-1491911889:772497..772604TCONS_00068902-exon-scaffold_49-1491911889:772497..772604Clytia hemisphaericaexon
TCONS_00068902-exon-scaffold_49-1491911889:772032..772139TCONS_00068902-exon-scaffold_49-1491911889:772032..772139Clytia hemisphaericaexon
TCONS_00068902-exon-scaffold_49-1491911889:771684..771791TCONS_00068902-exon-scaffold_49-1491911889:771684..771791Clytia hemisphaericaexon
TCONS_00068902-exon-scaffold_49-1491911889:770515..771378TCONS_00068902-exon-scaffold_49-1491911889:770515..771378Clytia hemisphaericaexon
TCONS_00068902-exon-scaffold_49-1491911889:769901..770206TCONS_00068902-exon-scaffold_49-1491911889:769901..770206Clytia hemisphaericaexon
TCONS_00068902-exon-scaffold_49-1491911889:769533..769674TCONS_00068902-exon-scaffold_49-1491911889:769533..769674Clytia hemisphaericaexon
TCONS_00068902-exon-scaffold_49-1491911889:768948..769129TCONS_00068902-exon-scaffold_49-1491911889:768948..769129Clytia hemisphaericaexon
TCONS_00068902-exon-scaffold_49-1491911889:768194..768385TCONS_00068902-exon-scaffold_49-1491911889:768194..768385Clytia hemisphaericaexon
TCONS_00068902-exon-scaffold_49-1491911889:766687..767622TCONS_00068902-exon-scaffold_49-1491911889:766687..767622Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:766687..773433 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0462203	0.111201	0.118372	0.141285	0.165829	0.154861	0.0646693	0.0996266	0.554983	4.58773e-08	0.960412	6.9319e-08	8.95918e-07	0	1.57355	0	0	1.34879e-05	19.1781	0	13.5982	6.73767	29.263	19.537	0	2.5608	1.76948	1.5543	9.82632	5.81644
Blast
[Close]
BLAST of TCONS_00068902 vs. Swiss-Prot (Human)
Match: CO1A2 (Collagen alpha-2(I) chain OS=Homo sapiens GN=COL1A2 PE=1 SV=7)

HSP 1 Score: 137.502 bits (345), Expect = 1.143e-32
Identity = 78/263 (29.66%), Postives = 118/263 (44.87%), Query Frame = 3 
Query: 1686 AENHNDIESIFKENYRVFQNFDNLWNRVMDDIVNKKSLGTKANPATTCADLFRTRKGLSSGDYWIDPNEGSSHDAILVHCNATNYETCVYAKQPE------------ADKDVWFAGKPSFLWAFKEYMDEPEGISYAADLVQLKMMRLLSNTVRQNITLHCKNS-------------------NGDMSIMTDENKEYEFNSLPRGMRSKTISNGCSIKDNQWHSRVVEIFSDNLRGFPVQDIGKF-IATETEQVGVTVGPVCF 2378
            A+      S+  ++Y V     +L N++   +  +   G++ NPA TC DL  +    SSG YWIDPN+G + DAI V+C+ +  ETC+ A QPE              K VW       + A  ++    EG++      QL  MRLL+N   QNIT HCKNS                   + D+ ++ + N  + +  L          +GCS K N+W   ++E  ++     P  DI    I    ++  V +GPVCF
Sbjct: 1119 ADQPRSAPSLRPKDYEVDATLKSLNNQIETLLTPE---GSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRA-QPENIPAKNWYRSSKDKKHVWLG---ETINAGSQFEYNVEGVTSKEMATQLAFMRLLANYASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVL---------VDGCSKKTNEWGKTIIEYKTNKPSRLPFLDIAPLDIGGADQEFFVDIGPVCF 1365
The following BLAST results are available for this feature:
BLAST of TCONS_00068902 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CO1A21.143e-3229.66Collagen alpha-2(I) chain OS=Homo sapiens GN=COL1A... [more]
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