|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068774 ID=TCONS_00068774|Name=TCONS_00068774|organism=Clytia hemisphaerica|type=transcript|length=1487bp
CGCCTCGTAAAAGCTTCATATATCTTACTGGTCAGTTTTAGCCCGTTAAG
CGATACGCAGAAGAAAAATTACTTAGTAAAGTAGGAGGGTCACAATATTC
ACAACGAAGGAGTTTGACGAGTTtgaccaaaacaaaacaaaactttcaaa
tctCCTGTGAATctacaactttttttttttatattgaacaATCCAGGACT
TATTAATCTCGAGGATGGGATGGTCGAAAGAAATAATGTAGCTATGATGA
TAGATAATATTTTCTGGAAAAATGATGTATAATATTGGAAACTAAGTTGT
TATTTTATCAGCAGTAAACCAGAAACATGGGTAACTCAGTCAGAAGTACA
CTTGGTAATCTTTGTGGTGCAGAGgcaTCGAAAGAATTACCGGACGAAGA
TCAAAAACCGGTCGCCAAACCGAAAGAGAAATCTCCAAAAGCCgaaaaga
aaaaggagaaaaaacaaaagaaaaagaagaagaaaaagaagggcAAAGGA
GGAGAGTTGGGAAAGATCGATGAAGATGTGGGGGAGAGTGACGTCATCAC
TGACCCTCCTTCGTCATCGTTCGTCGATGAATCTTCAGAATCAAAAATCG
AAAGTTCAACGAAAGAGCCGGTGGATGGCAGTCAATCACCATCTTATGAA
CgtaaattgatgacgtcagacAACAAAAAGGCAAACATGACCCTGCTGGA
ACAATCTATCGAAGCTGAACGTCAAACTTCACTAGAACCGCAAACTATGA
CGTTCGTTATCGAAAACATTCCGGAAAACGGTAAAAGTCCGGTCAACACC
AGTACTCCGACCGATAAAAATGCAATCCAACAGATAATTGTGGAAGAAGA
GGAGCACAATACTTTGGACTTTGGTAAATACATATTGGTTGACCCGAACA
CAGGAGATATTGCCGTGATGAGGAATCGTTCACGGAGTTTAGACAGCCTC
GTTTCAATACAATCTAATCGATCAAGTATCTCCAAGTTTGGCAGTTTTGA
ATTCGTCACAGACTATGAATTGACAATCGCCGAGAAAAATCAACAattga
aaagttgatttttgagGAGGTATAGTTTTTAAATGGAATCAGTATGGAAT
TTTGTATGTGAAACATATGCGATGTTTTTCGATAGTGGTGGTGGTGAGTG
ATTCCACAATGAGAATTGGTGTCTAAATGAAACTTCAAATCTTCTTCAAT
ATAAAACTTGTTGAATGGAATGGGGGAAAGGGGCCGTCATATTTTAGAAC
TCTAGTTCTTTATTTATCTTTGTATTAAATTTATTCTTTATATTTTCATC
TCAAAAGCATTTTTCATGCACCGTTCAAATGTTCACCATACTCACTCACT
TTTCAACGTGAATTCACAACACAAAACATTCCTCGAGGATTAaggtcggt
ctccacttgcgcgcgctgcaatcgcactttttggcttcaatcctttttgc
ttggaaaaaagattacgtcataaaaatgtagcgcgcg Run BLAST on NCBI transcript from alignment at scaffold_49:302900..311458+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068774 ID=TCONS_00068774|Name=TCONS_00068774|organism=Clytia hemisphaerica|type=transcript|length=8559bp|location=Sequence derived from alignment at scaffold_49:302900..311458+ (Clytia hemisphaerica)
CGCCTCGTAAAAGCTTCATATATCTTACTGGTCAGTTTTAGCCCGTTAAG
CGATACGCAGAAGAAAAATTACTTAGTAAAGTAGGAGGGTCACAATATTC
ACAACGAAGGAGTTTGACGAGTTtgaccaaaacaaaacaaaactttcaaa
tctCCTGTGAATctacaactttttttttttatattgaacaATCCAGGACT
TATTAATCTCGAGGATGGGATGGTCGAAAGAAATAATGTAGCTATGATGA
TAGATAATATTTTCTGGAAAAATGATGTATAATATTGGAAACTAAGTTGT
TATTTTATCAGCAGTAAACCAGAAACATGGGTAACTCAGTCAGAAGTACA
CTTGGTAATCTTTGTGGTGCAGAGGTAATTTTTTGGGGTTTTTCTGCCCT
TCCATGCAATAGAAAATAGCTGGTGTGCAATTTTCTAAGTGATGGCTTTc
cgttctttttctttttagtcaGATTTACCCAACACTATAGACataaacct
tttttcaaagaggacgtcctgttgaatataatcatgtagtccagcagaaa
aacaatgaaaaaaccatgcataattatcacaatatgcatgatacagtaat
tatgaatggctctatcattgtttttatggctggactataTAATTATttaa
caggacgtcctctttgaaaaaaggtctattctagcTGATTCTAGCCAAAA
AATCTGTCTCTGAATCTTACCTGCTAAACTGTTGCTGAACTGAGAGAGtc
atatatatttttatacACCTACGTACACCCAGACGATGCCAATCAAACAA
CTTGGAACGAAAATCGCAATCGAaacaatcaaacgtaatcgaacgaGATC
GAATAATTGGGATTCAATTGTCGAAcacaatcaaatctcaatctaATGGC
TGAttcttgggtaatattcgattgtgttttgATTGCATTCGAGTAAattt
cgattggttcgattgattgtaaaTTACCTTCGATTGATcttcgattatgt
ttgattacgattatgttcgataagtttgattgcgattaaataaAGTTTGA
TCATtcctttaaagcttttttagcaTGGACAGCCAAGCTCGTAAGTACGG
TACAAGagtgaatagaccttttttcaaagaggacgtcatgttgaataatt
atgtagtccatccataaaaacaatgatagagccatgcataattactctat
catgcatattgtaataattatgcatggtttaaTCAGGTttaatcattgtt
tttctgctggactacatgattattcaacagggtggcctctttgaaaaaag
gtctataaaatCAAATACAAATGAATCAATCGAATGTAACCGAACATTAT
CGTTACAATCGCAATTATtcaattgtgttcgattgcattCAATTGATTTG
GTGTTCGATTCATTCGATTGACACCATCTGGCCTGGGTACACCCTCGTAT
CGTTATGAAAAAGTGTCACAATTATAAaccttttgttgaaaaaatgttaa
aaaagttaTTAGTTACTCAAAAGACCATCTCCCAAACAACTATTAAAGGG
GCGAAATTATTACGTAATAACTCCACCCAACTTCTTATCACTTAATTATT
ATCTATATATATGGATTTTGCTATACCGGTATCCAAGCGTCAAGCTCGAA
ATTATATACACAACCACTAGGCCATTTTGCCTAATTGAACAACattgaac
gattaaagttcaatAATAATTTAAATCTCatcttaaaggaagaaattttg
gaggaaagaaaatttggcggatttggcagatttggccagaatctgccaaa
ttaagttcccgccaaaatttctttttaccgccatccgccaaattaaattc
ccgccaaattaaacttattgaaaatatgatctcttttaaggtgtttttgc
atttttttgctgtttttacgccattttaaggataaatttttcagcaaacg
ccaaattaaattcccgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNttttttcgtccatccgccaaattaaat
tccctctaaaaaactttttcggccatccgccaaattaaattcccgccaaa
atttcttcctttaaggtagtatTCCATGCAGCAGGTAGAAACTTTTAGCA
AGTTATTCTTGATAAACAAATATCCAGGTGAACCTCAAGTCCAGGAACTG
CTAAAGTAGAAACTTTTCAAGGACGATGCATAAGAGGTAAGGATTGGATA
TAATCAGACTAATTGAACTTTTTACCAACCGAACTAGTGGAAGTCCTATT
ACTTCCAAAATGTTGAGTGTTCCATTATTAATTGTTCAATCTAGCTTGAT
GGAGCTCAATTATTTGGTTCAACAAGTTGCAAACGTTCAATTGATCAGAG
TCATTATAAGTGTGACTATTTCTTtcttattattgttttgatgcttgAGT
TTTTAAAAAGGTCTATCAGTAGGCTGTTAAATGCATCAAAGCTTCATTTT
TTTGATACTGAGATAGATATAATTTAAAATTGAGTTTGTTCTAATAAGCA
TAACTTCTAAGAAATTCATTCAGGACTTTGCAAATCTGTTTAGGGTAAAG
AATGATGTTATCTAGTCTCGTCAAATTCTCAAAATGGAACGTTTCTTTTA
GCCTTGGAACTTTCAATCTTTCTTCTTCTTAACGGTCAAATTCTTTTTAA
TATCTGCAATTAATAAGTCCGAAAATCCCATAAAAACTGGTACCACTAAA
AAATTGGGTTTGTGTCATTAAAACAGAGCCCGGAAAGTGTTCATTGAGTT
GTGggcaattaaaattaaaattttaaaattaaaaaaaaaattaaattaaa
tagtATTTTCCAAACTTTATTCCTTTATGTAGCTGACTTCTATTGTTTTA
GGAAGCCAAGTTTTTAAATTTCGCCTAAGGttgattttttcgaatgttGA
ATCTGGATTTTGCTGTTCTAAATAATGTTTTCCACTTTCTAGAAATAGTT
TTTATGAAACGCTGGATCGATTCTATATTCCTAAGATGGTGTAACTCGAT
GTCATTGCTAAATAAGAGAGTTTTCGTTATAATGGCTTTTGTTCATAAGT
GGTTGTTAGGTgtttaacatttttaatgaaCTTAATAGAAAGCATTATGA
TTTGTTTAATGACGTTTCTTTGGATTGCATAGTATGTCATTACCATGGTT
ATTTTTCCTCTGCTTTAAGATGTCGTGAGATAGTTTAAAAAGTGAAAGGT
TTGACACTTCAGGGAAATGTGAGCATATAACATGGCCTTCTAAATATAAC
TTCAAAAAGTTGTGTTTTACCTGTAAGGTTTGCGAATATTAACTTTTAAA
TTTGAGTTTGACATAGAAGGGGACGGGTCGAAGTCGTCTTCTactatttg
tttacattttggtggaaaaaagattttagaaGCAGTTTACTATTTGAAAT
AATAACACAATCGATGGCCTGATTGTTATCATTTCGAGTTACACGTTTCT
GTTATGTTATCAATCAAAAGTCTCTTTGTCATCTCAATATTAGCCATGTT
AGATAATCACTTATCTTTGTAGACAAAAATATGTTAAACGGGTTCTGGCT
TTTCCTTGatcaaataaatgaaaaacGCTGTTGTCTGTTAACTTGACCTT
GTCCTTTCTATTATACAAATGAGGCCAGACCCTCGCATTGATTGTGAGGA
TATTCCCTCGAGTTCATAGTTCCTTGTCATTATCATAACCGcccaaattg
atttttaaaagaatcttTTTATTTCCGGGAATCTTTTTGCGAACggaagt
ttaaaaaaagaagagCATGCTTAATTGCACGTGAACAGTATGCACTTTTG
CACTTTGATTTAAAAACNAGATGAACATGCTTAATTGCACGTGAACAATA
TGCACTTTTGCACTTTGATTCATAACAAATAAATGCAAAAACTTTTCCTC
TTACATGTCCTTGCCCGAAATAGAATCGATTGTTCATTAAGAAGTGATCA
AAGTGCAGAAATCAAAAATAGGTGGGATGCGTTCAAAGTAGCAAGTTCAC
AACATTTtgtacattgaaaaaaaaaaatggactCTCGGCCTGTGTTGAAG
CGGAAAGACTTGAGGGTTGATCAGCAGATCTTGTCTATTATTAATTTGGT
CATCTTTTTGTCATATGGCCTGCTCAAGTGttccaatatctttccaacat
tAAAAGTAAGATAAAAACTCTACACTTAAGTCTTGTCCGGGCATTGTCCA
GAGAAAATAAATATTcatattatattttcaattagaAATCCAACTTTGGT
TATTTTATTAAGTTTGTTANTATTcatattatattttcaattagaAATCC
AACTTTGGTTATTTAattaagtttgtttttattttaggcaTCGAAAGAAT
TACCGGACGAAGATCAAAAACCGGTCGCCAAACCGAAAGAGAAATCTCCA
AAAGCCgaaaagaaaaaggagaaaaaacaaaagaaaaagaagaagaaaaa
gaagggcAAAGGAGGAGAGTTGGGAAAGATCGATGAAGATGTGGGGGAGA
GTGACGTCATCACTGACCCTCCTTCGTCATCGTTCGTCGATGAATCTTCA
GAATCAAAAATCGAAAGTTCAACGAAAGAGGTGcgctatgtttttgtttt
gttttacgCACTATCTATCTTTAAATGCATGCTTGTATAACGTACATTAT
TTAACGCACTCGTCTTTTCATTTCGAGGTCTCGCCTTTCCCAAACAAAAG
CTTTGGAATTCTCCAGAAAAAACTTATTTTGCCATTAATTCGATGAGGAC
CGTTTGAAATTGTTATGATTTTACTTAATTCCCTATAACTTAAAATCTCC
TCCATTTTCATAATCTTTAATTTACTTAAACAAGTTAAATTTGTATCCTT
ACTTCTCCTTACTTATAAAAGGATACTTTAAAATGTCTATTAAAACAAAC
GATCTCTACACTCATCAAAAGTTTGCACATAAATTGTTAACAATTAAACT
AACTTCACTCACCTTGCACTCACTAACCACTAACCTCATGAAGGAATTTT
ATGGAATGAAATACTTATGCCTAATTATTGGCATTGTTTAGGAATATGGG
GCAGATCAATTGGACGAGGAAAACAACGTCACGTTGGAAAAATTATCGAC
ACTTGTCGGAAATGGTGACGTCATTGCTTCTGGTGGGGAGGAGGACGTTC
AAGAAATTCACGTCGAATTCACGGATGACGAACTCGCTGATTCTGAAGGC
AGCCAATCAGAAGACGAAAAACAACCACGTGACCGGCTGAATACCCAATT
AGAAAAAAGTCGGGAGAGTGTGTTGGATAGTCTGGATGGTTTCACCAGGA
ACGATAGTACTGGTAGTCAGTTGAGTGGATTTTCGGTCATGCAAACAGGC
CCTGTGTACGAAAACGTTACTCAAGTAGTCCCTGAAGAATTGAACATCCA
ATATGCGGACGATATATTTCGAAATTGTGCTGCTCGCTATCAAATCTTTG
TGGATAAAACACATGATTTCAAATCGACTGTAGATGCCTTCACAAACATG
GTACCTTTACTGAAAGAAAACGCAGAATTGAAAGATTATTTCGAAGCTTA
TGGAAAGTTATTGGAGCAAGAAAGTGAAAAAGATAATCAAGGTCAGATTC
ACCAAAAAGCTCTCTTTCGTAACTAGAAGTTGATAAATGTCTTTTTAGAT
GAATTATCATCCATTGTTGTCAAGCTCCTCAAAAATTAGTTTAGAGGCTA
GTAACAGTAGAAACTTTAGTGAATATTGAGGTTAGTAatatgttgatatt
ttttgtattGCTTTAGTTGAGATGTCAGACGTGAACGTTTCGTTGCAAAC
TCTTCGCGCCAATGGAAACCAGCTCTTAGATATCATCGATAATGTTCGGC
CGCACGTAGATCGCTTGATCGATGACGCGTCCAACGTTGACGTCATCGAA
TACGTCAAAGGCAAGATGGTAGAAGGTGTACAGTTGGGCATCACATCAAA
GTTTTCGGCACCGGGTAAATATCGTCGTAACATGAAGCATTTGCGAAAAG
CTTTGTCCAACATTGATGCAGTTCAGGAAGAagtaaaagctattttagaa
gatgatgtttttctcgatCGAAATGAGTGTTCAGACAGTGATGAAGAAAG
CGGGCCAACCACGCCGCCACAACCACCATCAGATAATGAATCCGATATCG
TTCCCATGGTTCAACAGGAAGACATCCCAACAAACGATATCTTCCACAAA
CTTGACAACATGTCTGTGGAAGAATCTATTGAGTTGAGTGGAGAAACGAA
GGTAATCATCCTTCCTTCGTCTCTTCTCTTAATCTTAAAAATTGATCAGg
agttaaggccggtctccacttgcgcgcgctgcgatcgcattTTTTGGCTT
CAGTGCTTTTTGCTTggataaaagattacgtcataaaaatatagtgcgcg
ctcgaaaaaaaagttgaacacatttcaacttttttcaaccgttacgtcag
atcgcgccaatggagttgcttcatttttcttttgaccaatagcgtggaag
cttcgcccgaaaaagtgcgatcgaagcgcgcgcaagtggagaccggcctt
tacccTCTTCAGCTTGAGCTCTTTCAATGGGTAATCCATTGATTTTATTA
TTCTAAATAAATGAGGGTTCATTAACATAATTCTTAATCCCTAATGACTA
CTAACAACTAATCCACCTACAATTCTGGAGGTCTCTAATAACAGTCACAT
TAAAATTCTCTTTAACACGCGTGAATTTTGCCTTTCtagtaatttttttc
ctgtaCTTGGTCggaatttcttaaaaattggcaaaattggCGCGCATAAA
TAATCATCCATAATCATGCACGCTACAATATGCACGTTTTAAGTCTAAAC
AAGATTCTTTAAGATCTTGCATCTCAATATGACCACAGTTCAATCTATAT
AAAACTTTAACCACGTCATTTCACAATGTGCCCGAAAAAGCGAACAAATC
TTTATATAAGGTAAATCCCCAAAACTTGTTATCAAAACTGtgcttaaaat
aatttgaaagaagatTACGATTGTTGTTCGATCTAAAGATATTCAATccc
caagatgattgaataagTTTTTGAGATTTGAATATTAAGtatacaagtca
taaaatttggcatgaagtatgaggattttactttacatAAAATTTGTCcg
ttttttgggacacactatGTATTTATAAACTTTAAAGCTTTTTACAATAC
CATTTTACTGAATTGAGTTATTATTTTTCTCCTTCGCAGCCGGTGGATGG
CAGTCAATCACCATCTTATGAACgtaaattgatgacgtcagacAACAAAA
AGGCAAACATGACCCTGCTGGAACAATCTATCGAAGCTGAACGTCAAACT
TCACTAGAACCGCAAACTATGACGTTCGTTATCGAAAACATTCCGGAAAA
CGGTAAAAGTCCGGTCAACACCAGTACTCCGACCGATAAAAATGCAATCC
AACAGATAATTGTGGAAGAAGAGGAGCACAATACTTTGGACTTTGGTAAA
TACATATTGGTTGACCCGAACACAGGAGATATTGCCGTGATGAGGAATCG
TTCACGGAGTTTAGACAGCCTCGTTTCAATACAATCTAATCGATCAAGTA
TCTCCAAGTTTGGCAGTTTTGAATTCGTCACAGACTATGAATTGACAATC
GCCGAGAAAAATCAACAattgaaaagttgatttttgagGAGGTATAGTTT
TTAAATGGAATCAGTATGGAATTTTGTATGTGAAACATATGCGATGTTTT
TCGATAGTGGTGGTGGTGAGTGATTCCACAATGAGAATTGGTGTCTAAAT
GAAACTTCAAATCTTCTTCAATATAAAACTTGTTGAATGGAATGGGGGAA
AGGGGCCGTCATATTTTAGAACTCTAGTTCTTTATTTATCTTTGTATTAA
ATTTATTCTTTATATTTTCATCTCAAAAGCATTTTTCATGCACCGTTCAA
ATGTTCACCATACTCACTCACTTTTCAACGTGAATTCACAACACAAAACA
TTCCTCGAGGATTAaggtcggtctccacttgcgcgcgctgcaatcgcact
ttttggcttcaatcctttttgcttggaaaaaagattacgtcataaaaatg
tagcgcgcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068774-exon-scaffold_49-1491911889:302900..303273 | TCONS_00068774-exon-scaffold_49-1491911889:302900..303273 | Clytia hemisphaerica | exon |
| TCONS_00068774-exon-scaffold_49-1510915933:302900..303273 | TCONS_00068774-exon-scaffold_49-1510915933:302900..303273 | Clytia hemisphaerica | exon |
| TCONS_00068774-exon-scaffold_49-1575043694:302900..303273 | TCONS_00068774-exon-scaffold_49-1575043694:302900..303273 | Clytia hemisphaerica | exon |
| TCONS_00068774-exon-scaffold_49-1491911889:307687..307929 | TCONS_00068774-exon-scaffold_49-1491911889:307687..307929 | Clytia hemisphaerica | exon |
| TCONS_00068774-exon-scaffold_49-1510915933:307687..307929 | TCONS_00068774-exon-scaffold_49-1510915933:307687..307929 | Clytia hemisphaerica | exon |
| TCONS_00068774-exon-scaffold_49-1575043694:307687..307929 | TCONS_00068774-exon-scaffold_49-1575043694:307687..307929 | Clytia hemisphaerica | exon |
| TCONS_00068774-exon-scaffold_49-1491911889:310589..311458 | TCONS_00068774-exon-scaffold_49-1491911889:310589..311458 | Clytia hemisphaerica | exon |
| TCONS_00068774-exon-scaffold_49-1510915933:310589..311458 | TCONS_00068774-exon-scaffold_49-1510915933:310589..311458 | Clytia hemisphaerica | exon |
| TCONS_00068774-exon-scaffold_49-1575043694:310589..311458 | TCONS_00068774-exon-scaffold_49-1575043694:310589..311458 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_49 | supercontig | scaffold_49:302900..311458 + |
Blast
The following BLAST results are available for this feature:
|
