XLOC_042887 (gene) - C. hemisphaerica

Overview
NameXLOC_042887
Unique NameXLOC_042887
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_49:302900..311458+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042887 ID=XLOC_042887|Name=XLOC_042887|organism=Clytia hemisphaerica|type=gene|length=8559bp|location=Sequence derived from alignment at scaffold_49:302900..311458+ (Clytia hemisphaerica)
CGCCTCGTAAAAGCTTCATATATCTTACTGGTCAGTTTTAGCCCGTTAAG
CGATACGCAGAAGAAAAATTACTTAGTAAAGTAGGAGGGTCACAATATTC
ACAACGAAGGAGTTTGACGAGTTtgaccaaaacaaaacaaaactttcaaa
tctCCTGTGAATctacaactttttttttttatattgaacaATCCAGGACT
TATTAATCTCGAGGATGGGATGGTCGAAAGAAATAATGTAGCTATGATGA
TAGATAATATTTTCTGGAAAAATGATGTATAATATTGGAAACTAAGTTGT
TATTTTATCAGCAGTAAACCAGAAACATGGGTAACTCAGTCAGAAGTACA
CTTGGTAATCTTTGTGGTGCAGAGGTAATTTTTTGGGGTTTTTCTGCCCT
TCCATGCAATAGAAAATAGCTGGTGTGCAATTTTCTAAGTGATGGCTTTc
cgttctttttctttttagtcaGATTTACCCAACACTATAGACataaacct
tttttcaaagaggacgtcctgttgaatataatcatgtagtccagcagaaa
aacaatgaaaaaaccatgcataattatcacaatatgcatgatacagtaat
tatgaatggctctatcattgtttttatggctggactataTAATTATttaa
caggacgtcctctttgaaaaaaggtctattctagcTGATTCTAGCCAAAA
AATCTGTCTCTGAATCTTACCTGCTAAACTGTTGCTGAACTGAGAGAGtc
atatatatttttatacACCTACGTACACCCAGACGATGCCAATCAAACAA
CTTGGAACGAAAATCGCAATCGAaacaatcaaacgtaatcgaacgaGATC
GAATAATTGGGATTCAATTGTCGAAcacaatcaaatctcaatctaATGGC
TGAttcttgggtaatattcgattgtgttttgATTGCATTCGAGTAAattt
cgattggttcgattgattgtaaaTTACCTTCGATTGATcttcgattatgt
ttgattacgattatgttcgataagtttgattgcgattaaataaAGTTTGA
TCATtcctttaaagcttttttagcaTGGACAGCCAAGCTCGTAAGTACGG
TACAAGagtgaatagaccttttttcaaagaggacgtcatgttgaataatt
atgtagtccatccataaaaacaatgatagagccatgcataattactctat
catgcatattgtaataattatgcatggtttaaTCAGGTttaatcattgtt
tttctgctggactacatgattattcaacagggtggcctctttgaaaaaag
gtctataaaatCAAATACAAATGAATCAATCGAATGTAACCGAACATTAT
CGTTACAATCGCAATTATtcaattgtgttcgattgcattCAATTGATTTG
GTGTTCGATTCATTCGATTGACACCATCTGGCCTGGGTACACCCTCGTAT
CGTTATGAAAAAGTGTCACAATTATAAaccttttgttgaaaaaatgttaa
aaaagttaTTAGTTACTCAAAAGACCATCTCCCAAACAACTATTAAAGGG
GCGAAATTATTACGTAATAACTCCACCCAACTTCTTATCACTTAATTATT
ATCTATATATATGGATTTTGCTATACCGGTATCCAAGCGTCAAGCTCGAA
ATTATATACACAACCACTAGGCCATTTTGCCTAATTGAACAACattgaac
gattaaagttcaatAATAATTTAAATCTCatcttaaaggaagaaattttg
gaggaaagaaaatttggcggatttggcagatttggccagaatctgccaaa
ttaagttcccgccaaaatttctttttaccgccatccgccaaattaaattc
ccgccaaattaaacttattgaaaatatgatctcttttaaggtgtttttgc
atttttttgctgtttttacgccattttaaggataaatttttcagcaaacg
ccaaattaaattcccgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNttttttcgtccatccgccaaattaaat
tccctctaaaaaactttttcggccatccgccaaattaaattcccgccaaa
atttcttcctttaaggtagtatTCCATGCAGCAGGTAGAAACTTTTAGCA
AGTTATTCTTGATAAACAAATATCCAGGTGAACCTCAAGTCCAGGAACTG
CTAAAGTAGAAACTTTTCAAGGACGATGCATAAGAGGTAAGGATTGGATA
TAATCAGACTAATTGAACTTTTTACCAACCGAACTAGTGGAAGTCCTATT
ACTTCCAAAATGTTGAGTGTTCCATTATTAATTGTTCAATCTAGCTTGAT
GGAGCTCAATTATTTGGTTCAACAAGTTGCAAACGTTCAATTGATCAGAG
TCATTATAAGTGTGACTATTTCTTtcttattattgttttgatgcttgAGT
TTTTAAAAAGGTCTATCAGTAGGCTGTTAAATGCATCAAAGCTTCATTTT
TTTGATACTGAGATAGATATAATTTAAAATTGAGTTTGTTCTAATAAGCA
TAACTTCTAAGAAATTCATTCAGGACTTTGCAAATCTGTTTAGGGTAAAG
AATGATGTTATCTAGTCTCGTCAAATTCTCAAAATGGAACGTTTCTTTTA
GCCTTGGAACTTTCAATCTTTCTTCTTCTTAACGGTCAAATTCTTTTTAA
TATCTGCAATTAATAAGTCCGAAAATCCCATAAAAACTGGTACCACTAAA
AAATTGGGTTTGTGTCATTAAAACAGAGCCCGGAAAGTGTTCATTGAGTT
GTGggcaattaaaattaaaattttaaaattaaaaaaaaaattaaattaaa
tagtATTTTCCAAACTTTATTCCTTTATGTAGCTGACTTCTATTGTTTTA
GGAAGCCAAGTTTTTAAATTTCGCCTAAGGttgattttttcgaatgttGA
ATCTGGATTTTGCTGTTCTAAATAATGTTTTCCACTTTCTAGAAATAGTT
TTTATGAAACGCTGGATCGATTCTATATTCCTAAGATGGTGTAACTCGAT
GTCATTGCTAAATAAGAGAGTTTTCGTTATAATGGCTTTTGTTCATAAGT
GGTTGTTAGGTgtttaacatttttaatgaaCTTAATAGAAAGCATTATGA
TTTGTTTAATGACGTTTCTTTGGATTGCATAGTATGTCATTACCATGGTT
ATTTTTCCTCTGCTTTAAGATGTCGTGAGATAGTTTAAAAAGTGAAAGGT
TTGACACTTCAGGGAAATGTGAGCATATAACATGGCCTTCTAAATATAAC
TTCAAAAAGTTGTGTTTTACCTGTAAGGTTTGCGAATATTAACTTTTAAA
TTTGAGTTTGACATAGAAGGGGACGGGTCGAAGTCGTCTTCTactatttg
tttacattttggtggaaaaaagattttagaaGCAGTTTACTATTTGAAAT
AATAACACAATCGATGGCCTGATTGTTATCATTTCGAGTTACACGTTTCT
GTTATGTTATCAATCAAAAGTCTCTTTGTCATCTCAATATTAGCCATGTT
AGATAATCACTTATCTTTGTAGACAAAAATATGTTAAACGGGTTCTGGCT
TTTCCTTGatcaaataaatgaaaaacGCTGTTGTCTGTTAACTTGACCTT
GTCCTTTCTATTATACAAATGAGGCCAGACCCTCGCATTGATTGTGAGGA
TATTCCCTCGAGTTCATAGTTCCTTGTCATTATCATAACCGcccaaattg
atttttaaaagaatcttTTTATTTCCGGGAATCTTTTTGCGAACggaagt
ttaaaaaaagaagagCATGCTTAATTGCACGTGAACAGTATGCACTTTTG
CACTTTGATTTAAAAACNAGATGAACATGCTTAATTGCACGTGAACAATA
TGCACTTTTGCACTTTGATTCATAACAAATAAATGCAAAAACTTTTCCTC
TTACATGTCCTTGCCCGAAATAGAATCGATTGTTCATTAAGAAGTGATCA
AAGTGCAGAAATCAAAAATAGGTGGGATGCGTTCAAAGTAGCAAGTTCAC
AACATTTtgtacattgaaaaaaaaaaatggactCTCGGCCTGTGTTGAAG
CGGAAAGACTTGAGGGTTGATCAGCAGATCTTGTCTATTATTAATTTGGT
CATCTTTTTGTCATATGGCCTGCTCAAGTGttccaatatctttccaacat
tAAAAGTAAGATAAAAACTCTACACTTAAGTCTTGTCCGGGCATTGTCCA
GAGAAAATAAATATTcatattatattttcaattagaAATCCAACTTTGGT
TATTTTATTAAGTTTGTTANTATTcatattatattttcaattagaAATCC
AACTTTGGTTATTTAattaagtttgtttttattttaggcaTCGAAAGAAT
TACCGGACGAAGATCAAAAACCGGTCGCCAAACCGAAAGAGAAATCTCCA
AAAGCCgaaaagaaaaaggagaaaaaacaaaagaaaaagaagaagaaaaa
gaagggcAAAGGAGGAGAGTTGGGAAAGATCGATGAAGATGTGGGGGAGA
GTGACGTCATCACTGACCCTCCTTCGTCATCGTTCGTCGATGAATCTTCA
GAATCAAAAATCGAAAGTTCAACGAAAGAGGTGcgctatgtttttgtttt
gttttacgCACTATCTATCTTTAAATGCATGCTTGTATAACGTACATTAT
TTAACGCACTCGTCTTTTCATTTCGAGGTCTCGCCTTTCCCAAACAAAAG
CTTTGGAATTCTCCAGAAAAAACTTATTTTGCCATTAATTCGATGAGGAC
CGTTTGAAATTGTTATGATTTTACTTAATTCCCTATAACTTAAAATCTCC
TCCATTTTCATAATCTTTAATTTACTTAAACAAGTTAAATTTGTATCCTT
ACTTCTCCTTACTTATAAAAGGATACTTTAAAATGTCTATTAAAACAAAC
GATCTCTACACTCATCAAAAGTTTGCACATAAATTGTTAACAATTAAACT
AACTTCACTCACCTTGCACTCACTAACCACTAACCTCATGAAGGAATTTT
ATGGAATGAAATACTTATGCCTAATTATTGGCATTGTTTAGGAATATGGG
GCAGATCAATTGGACGAGGAAAACAACGTCACGTTGGAAAAATTATCGAC
ACTTGTCGGAAATGGTGACGTCATTGCTTCTGGTGGGGAGGAGGACGTTC
AAGAAATTCACGTCGAATTCACGGATGACGAACTCGCTGATTCTGAAGGC
AGCCAATCAGAAGACGAAAAACAACCACGTGACCGGCTGAATACCCAATT
AGAAAAAAGTCGGGAGAGTGTGTTGGATAGTCTGGATGGTTTCACCAGGA
ACGATAGTACTGGTAGTCAGTTGAGTGGATTTTCGGTCATGCAAACAGGC
CCTGTGTACGAAAACGTTACTCAAGTAGTCCCTGAAGAATTGAACATCCA
ATATGCGGACGATATATTTCGAAATTGTGCTGCTCGCTATCAAATCTTTG
TGGATAAAACACATGATTTCAAATCGACTGTAGATGCCTTCACAAACATG
GTACCTTTACTGAAAGAAAACGCAGAATTGAAAGATTATTTCGAAGCTTA
TGGAAAGTTATTGGAGCAAGAAAGTGAAAAAGATAATCAAGGTCAGATTC
ACCAAAAAGCTCTCTTTCGTAACTAGAAGTTGATAAATGTCTTTTTAGAT
GAATTATCATCCATTGTTGTCAAGCTCCTCAAAAATTAGTTTAGAGGCTA
GTAACAGTAGAAACTTTAGTGAATATTGAGGTTAGTAatatgttgatatt
ttttgtattGCTTTAGTTGAGATGTCAGACGTGAACGTTTCGTTGCAAAC
TCTTCGCGCCAATGGAAACCAGCTCTTAGATATCATCGATAATGTTCGGC
CGCACGTAGATCGCTTGATCGATGACGCGTCCAACGTTGACGTCATCGAA
TACGTCAAAGGCAAGATGGTAGAAGGTGTACAGTTGGGCATCACATCAAA
GTTTTCGGCACCGGGTAAATATCGTCGTAACATGAAGCATTTGCGAAAAG
CTTTGTCCAACATTGATGCAGTTCAGGAAGAagtaaaagctattttagaa
gatgatgtttttctcgatCGAAATGAGTGTTCAGACAGTGATGAAGAAAG
CGGGCCAACCACGCCGCCACAACCACCATCAGATAATGAATCCGATATCG
TTCCCATGGTTCAACAGGAAGACATCCCAACAAACGATATCTTCCACAAA
CTTGACAACATGTCTGTGGAAGAATCTATTGAGTTGAGTGGAGAAACGAA
GGTAATCATCCTTCCTTCGTCTCTTCTCTTAATCTTAAAAATTGATCAGg
agttaaggccggtctccacttgcgcgcgctgcgatcgcattTTTTGGCTT
CAGTGCTTTTTGCTTggataaaagattacgtcataaaaatatagtgcgcg
ctcgaaaaaaaagttgaacacatttcaacttttttcaaccgttacgtcag
atcgcgccaatggagttgcttcatttttcttttgaccaatagcgtggaag
cttcgcccgaaaaagtgcgatcgaagcgcgcgcaagtggagaccggcctt
tacccTCTTCAGCTTGAGCTCTTTCAATGGGTAATCCATTGATTTTATTA
TTCTAAATAAATGAGGGTTCATTAACATAATTCTTAATCCCTAATGACTA
CTAACAACTAATCCACCTACAATTCTGGAGGTCTCTAATAACAGTCACAT
TAAAATTCTCTTTAACACGCGTGAATTTTGCCTTTCtagtaatttttttc
ctgtaCTTGGTCggaatttcttaaaaattggcaaaattggCGCGCATAAA
TAATCATCCATAATCATGCACGCTACAATATGCACGTTTTAAGTCTAAAC
AAGATTCTTTAAGATCTTGCATCTCAATATGACCACAGTTCAATCTATAT
AAAACTTTAACCACGTCATTTCACAATGTGCCCGAAAAAGCGAACAAATC
TTTATATAAGGTAAATCCCCAAAACTTGTTATCAAAACTGtgcttaaaat
aatttgaaagaagatTACGATTGTTGTTCGATCTAAAGATATTCAATccc
caagatgattgaataagTTTTTGAGATTTGAATATTAAGtatacaagtca
taaaatttggcatgaagtatgaggattttactttacatAAAATTTGTCcg
ttttttgggacacactatGTATTTATAAACTTTAAAGCTTTTTACAATAC
CATTTTACTGAATTGAGTTATTATTTTTCTCCTTCGCAGCCGGTGGATGG
CAGTCAATCACCATCTTATGAACgtaaattgatgacgtcagacAACAAAA
AGGCAAACATGACCCTGCTGGAACAATCTATCGAAGCTGAACGTCAAACT
TCACTAGAACCGCAAACTATGACGTTCGTTATCGAAAACATTCCGGAAAA
CGGTAAAAGTCCGGTCAACACCAGTACTCCGACCGATAAAAATGCAATCC
AACAGATAATTGTGGAAGAAGAGGAGCACAATACTTTGGACTTTGGTAAA
TACATATTGGTTGACCCGAACACAGGAGATATTGCCGTGATGAGGAATCG
TTCACGGAGTTTAGACAGCCTCGTTTCAATACAATCTAATCGATCAAGTA
TCTCCAAGTTTGGCAGTTTTGAATTCGTCACAGACTATGAATTGACAATC
GCCGAGAAAAATCAACAattgaaaagttgatttttgagGAGGTATAGTTT
TTAAATGGAATCAGTATGGAATTTTGTATGTGAAACATATGCGATGTTTT
TCGATAGTGGTGGTGGTGAGTGATTCCACAATGAGAATTGGTGTCTAAAT
GAAACTTCAAATCTTCTTCAATATAAAACTTGTTGAATGGAATGGGGGAA
AGGGGCCGTCATATTTTAGAACTCTAGTTCTTTATTTATCTTTGTATTAA
ATTTATTCTTTATATTTTCATCTCAAAAGCATTTTTCATGCACCGTTCAA
ATGTTCACCATACTCACTCACTTTTCAACGTGAATTCACAACACAAAACA
TTCCTCGAGGATTAaggtcggtctccacttgcgcgcgctgcaatcgcact
ttttggcttcaatcctttttgcttggaaaaaagattacgtcataaaaatg
tagcgcgcg
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00068774TCONS_00068774Clytia hemisphaericatranscript
TCONS_00068775TCONS_00068775Clytia hemisphaericatranscript
TCONS_00068776TCONS_00068776Clytia hemisphaericatranscript
TCONS_00068777TCONS_00068777Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00068776-proteinTCONS_00068776-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:302900..311458 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.4	17.35	4.43	3.24	89.46	69.05	161.47	172.66	101.64	129.61	87.68	64.02	90.16	66.63	62.9	113.79	17.71	20.67	44.36	86.27	9.62	9.03	16.39	18.37	12.11	14.58	13.03	8.7	20.55	21.13