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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067488 ID=TCONS_00067488|Name=TCONS_00067488|organism=Clytia hemisphaerica|type=transcript|length=1313bp
CAGCTTATGtcacaaaaatattattaagtgtattcaaaaacgaaatagtt
tgatttttttctgggaAACGTTCTCTTAATAGAGGGCTTTACCTGGCTTA
GTATTTTCTTCAAAGTTATAACTTTTGGACAAATGATTGAATTGGTGTTT
TTGAGATGTATTTGACGTTGGTCCAATTTAAGGAAGGATGAcgttagcaa
aatattttatagtGTGGTTTATCACAGTTTCGCTGATAATAACCCAGTCG
CTATCATTTGAATTCACCGGGGAAACTTCTCATCAGATTTTCCCATCATC
ACTCAATCAAGTGATCTTTCGTGTATCTACCAGCCTTGGCGAGAGCAACA
ATGCTGTTCGATATTTTATTCATAACGTCAACAAAGATGGCGAGGCTCCT
CCTGATCGTAGTTTGTGGGGTGCCCTGTCAGACCAGACTGATGCGGATGA
TTGTAGCGCCCTGGCAGAAACTTTTTATCCGACgcctagaaaatattttt
gtatagACCATCGAACAGGGGATGTCAAACTAACCTCTTCATACAGCGTC
TCTGCAGCTTTGGAGAAATATCATATCGATATTAAAGTGAGCGATGGTAC
TGATACAAAGCATCAGACTTATGAAATATCATACTGGCCCTCTGAATGTC
AATACATACAAGCGCAGTACGATTCGATTCAAGCGAATAGCAACTGTTAT
CATTCGAGAAGTAAAACTTATAAATTTAATATTGATTTCGATGATACAAG
TGTTTATACAGCTATAACTTTAGATGAGCCAGGATTTTTAGTAGATATCT
CATACAACAGAAGTAAACTTTCAGTGAACGACTTTTCAACCCTCAATATA
ACATACGTCGGTGATGATGGTTTTGTTACTGAGAAAATATTCACGGATGA
GAAATTTCCAAATCCAGTGCCCCTAATTGCAGGACAAACATTATTTAGAA
TGGCAATTAAAGATACAACTACCGGACAAAATTTACTGGCTCATAGTAAG
GGCTGGAGAATGTACGTTATTCTTGGGACGAATTTTTGTTCTGCGAATGC
AACGTGTATTGATTCTACTGGTCATTGGTTGAACGAACAAGAACGGTTAA
ATGAATATTGTGTAGTGGATTCTTATGGGTATTTACACAAGTATGGGTAT
TGTACAGAGAATCCGACACGTTTTAGTAATACCATAGCAACAACTTCGTC
TCCaaccacaacaacgaccaccaccACGGAAGGTCCAACAATATCCGCCA
CTAGTAGTGATCCATGTCAAAACTATATTTTGGATAATGACCCAGAAAAT
TGGAAAAGGAGCA Run BLAST on NCBI transcript from alignment at scaffold_47:304199..307877- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067488 ID=TCONS_00067488|Name=TCONS_00067488|organism=Clytia hemisphaerica|type=transcript|length=3679bp|location=Sequence derived from alignment at scaffold_47:304199..307877- (Clytia hemisphaerica)
CAGCTTATGTCACAAAAATATTATTAAGTGTATTCAAAAACGAAATAGTT
TGATTTTTTTCTGGGAAACGTTCTCTTAATAGAGGGCTTTACCTGGCTTA
GTATTTTCTTCAAAGTTATAACTTTTGGACAAATGATTGAATTGGTGTTT
TTGAGATGTATTTGACGTTGGTCCAATTTAAGGAAGGATGACGTTAGCAA
AATATTTTATAGTGTGGTTTATCACAGTTTCGCTGATAATAAGTAAGTAA
AGAATTTCATTAAATTTTTCAGTAAAGTATTAATTTATTCTACCCTATCT
ACTCTTAGGTGCCAAATAAACGGGCCCCGCCCCGCTTGTTAATTTTTTAA
TTTTTTTCCAACCCCCCCGGACGTTATTAGGACCCCCCCGTTTATCAATT
TTTGAAAAAATTCCCAGCTCCCAAAAGAAAAGTTTCTTGTTTTACTCTAA
AAAGCCTAAATTTAGTCTATTTTGACACTTTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCGGCTTTCTTATACTATGGT
TTTTTCAATAAAGGGGGCAGATATGTAGGGGGGGTTACCACCCCTTGATG
AATTTTCGATTCATCGCCAAAGGTTGGCACTTTAGGTTAAAAATCCACTC
TTACGTTTTTGATTAACTATTTACCTACCTACCCTTTTGATAAAAATCCC
CTCTAAACGATTTTCTTCAAATTTCTTCCTCGGTTTTTTAGCCCAGTCGC
TATCATTTGAATTCACCGGGGAAACTTCTCATCAGATTTTCCCATCATCA
CTCAATCAAGTGATCTTTCGTGTATCTACCAGCCTTGGCGAGAGCAACAA
TGCTGTTCGATATTTTATTCATAACGTCAACAAAGATGGCGAGGCTCCTC
CTGATCGTAGTTTGTGGGGTGCCCTGTCAGACCAGACTGATGCGGATGAT
TGTAGCGCCCTGGCAGAAACTTTTTATCCGACGCCTAGAAAATATTTTTG
TATAGACCATCGAACAGGGGATGTCAAACTAACCTCTTCATACAGCGTCT
CTGCAGCTTTGGAGAAATATCATATCGATATTAAAGTGAGCGATGGTACT
GATACAAAGCATCAGACTTATGAAATATCATACTGGCCCTCTGAATGTCA
ATACATACAAGCGCAGTACGATTCGATTCAAGCGAATAGCAACTGTTATC
ATTCGAGAAGTAAAACTTATAAATTTAATATTGATTTCGATGATACAAGT
GTTTATACAGCTATAACTTTAGATGAGCCAGGATTTTTAGTAGATATCTC
ATACAACAGAAGTAAACTTTCAGTGAACGACTTTTCAACCCTCAATATAA
CATACGTCGGTGATGATGGTTTTGTTACTGAGAAAATATTCACGGATGAG
AAATTTCCAAATCCAGTGCCCCTAATTGCAGGACAAACATTATTTAGAAT
GGCAATTAAAGATACAACTACCGGACAAAATTTACTGGCTCATAGTAAGG
GCTGGAGAATGTACGTTATTCTTGGGACGAATTTTTGTTCTGCGAATGCA
ACGTGTATTGATTCTACTGGTCATTGGTTGAACGAACAAGAACGGTTAAA
TGAATATTGTGTAGTGGATTCTTATGGGTATTTACACAAGTATGGGTATT
GTACAGGTATGTACGCTTTGTCTTTCTCTTAGTCATTTTGTACTTGACCT
TCCCATTACAATCTATCGACTTTCTATAGCTTTGAAAATAATACACAAAG
AGACAAACTCTCCAAAAAGAGAAATTTGTAAATTGGAAACTTTAAATTCC
TGGTGACTGGAGATGAGGAATTAAAGTTAACATCTCGCTTATGCAAGTAA
TTACAATTGCCAATTGACTTTACCATCTAGTAAAATGTTCATATTAATAA
CACACTATCACCCCTTTTGATCGATAGCTTTCGAAATATCATAAGAATGC
TTTTTGATTTAATATTTGGTTTTTATTTGCAGAGAATCCGACACGTTTTA
GTAATACCATAGCAACAACTTCGTCTCCAACCACAACAACGACCACCACC
ACGGAAGGTCCAACAATATCCGCCACTAGTAGTGGTAAGCTAAGTTCATC
TTATGACAAACTGAAATTTATCTCGTTTCACATTGCAACACCAATTATAA
CCACACTAGATACAGTACAAAGCCTACGGAGACCGCAAATTTGTTTCAAG
TCATGAAAACTAGTTATCAGGCATTGTTAACTGAAAAGGCCATCAAACCT
GTTAGAGTTAAGGAGACATTGGAGTAATACATGTTTTTTTATAGGCATAA
CGCTTATAAGCATATGAAGGCTCAGATTTACAGAATTCCAAACATAACAT
AAGCATACCATATTTTTCAAGTTGTCATTTTTATCTTAAATGGTTTGGTT
AAGGTTTGGTAGAGGTCAAGTAAAAAAAGAACTTTCCACGGCCCAAAATC
TGAACAAATTTTTACAAAATTTCTGAAATTTAACTAAAAACTTGGCTCGA
GGTGAATCATAAAGCATGATTCATAAGCATATAGTAAGCTATGCCTGGAT
GTATACACGAGCCTGACCAAGGGGCATACACTTGCTTATAAAAAAACATG
TAAAGAGATTCCACTGTATTGTGCTTTACAGAAAATGGCAAAAAGTTTCC
AAAAAGTGAGTTTTCATACTGACATTGTAGTGAATCGAAACTACACCTTA
ACTCGTCTTCTCTGTTACTATTGTTGCTGTTTCTAACTTATACTTCAAAT
TGCTATTTCTAACTTTCTTCTATAGATCCATGTCAAAACTATATTTTGGA
TAATGACCCAGAAAATTGGAAAAGGAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067488-exon-scaffold_47-1575043694:307636..307877 | TCONS_00067488-exon-scaffold_47-1575043694:307636..307877 | Clytia hemisphaerica | exon |
| TCONS_00067488-exon-scaffold_47-1575043694:305372..306286 | TCONS_00067488-exon-scaffold_47-1575043694:305372..306286 | Clytia hemisphaerica | exon |
| TCONS_00067488-exon-scaffold_47-1575043694:304944..305045 | TCONS_00067488-exon-scaffold_47-1575043694:304944..305045 | Clytia hemisphaerica | exon |
| TCONS_00067488-exon-scaffold_47-1575043694:304199..304252 | TCONS_00067488-exon-scaffold_47-1575043694:304199..304252 | Clytia hemisphaerica | exon |
| TCONS_00067488-exon-scaffold_47-1510915933:307636..307877 | TCONS_00067488-exon-scaffold_47-1510915933:307636..307877 | Clytia hemisphaerica | exon |
| TCONS_00067488-exon-scaffold_47-1510915933:305372..306286 | TCONS_00067488-exon-scaffold_47-1510915933:305372..306286 | Clytia hemisphaerica | exon |
| TCONS_00067488-exon-scaffold_47-1510915933:304944..305045 | TCONS_00067488-exon-scaffold_47-1510915933:304944..305045 | Clytia hemisphaerica | exon |
| TCONS_00067488-exon-scaffold_47-1510915933:304199..304252 | TCONS_00067488-exon-scaffold_47-1510915933:304199..304252 | Clytia hemisphaerica | exon |
| TCONS_00067488-exon-scaffold_47-1491911889:307636..307877 | TCONS_00067488-exon-scaffold_47-1491911889:307636..307877 | Clytia hemisphaerica | exon |
| TCONS_00067488-exon-scaffold_47-1491911889:305372..306286 | TCONS_00067488-exon-scaffold_47-1491911889:305372..306286 | Clytia hemisphaerica | exon |
| TCONS_00067488-exon-scaffold_47-1491911889:304944..305045 | TCONS_00067488-exon-scaffold_47-1491911889:304944..305045 | Clytia hemisphaerica | exon |
| TCONS_00067488-exon-scaffold_47-1491911889:304199..304252 | TCONS_00067488-exon-scaffold_47-1491911889:304199..304252 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_47 | supercontig | scaffold_47:304199..307877 - |
Blast
The following BLAST results are available for this feature:
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