XLOC_042147 (gene) - C. hemisphaerica

Overview
NameXLOC_042147
Unique NameXLOC_042147
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_47:302150..307877-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042147 ID=XLOC_042147|Name=XLOC_042147|organism=Clytia hemisphaerica|type=gene|length=5728bp|location=Sequence derived from alignment at scaffold_47:302150..307877- (Clytia hemisphaerica)
CAGCTTATGTCACAAAAATATTATTAAGTGTATTCAAAAACGAAATAGTT
TGATTTTTTTCTGGGAAACGTTCTCTTAATAGAGGGCTTTACCTGGCTTA
GTATTTTCTTCAAAGTTATAACTTTTGGACAAATGATTGAATTGGTGTTT
TTGAGATGTATTTGACGTTGGTCCAATTTAAGGAAGGATGACGTTAGCAA
AATATTTTATAGTGTGGTTTATCACAGTTTCGCTGATAATAAGTAAGTAA
AGAATTTCATTAAATTTTTCAGTAAAGTATTAATTTATTCTACCCTATCT
ACTCTTAGGTGCCAAATAAACGGGCCCCGCCCCGCTTGTTAATTTTTTAA
TTTTTTTCCAACCCCCCCGGACGTTATTAGGACCCCCCCGTTTATCAATT
TTTGAAAAAATTCCCAGCTCCCAAAAGAAAAGTTTCTTGTTTTACTCTAA
AAAGCCTAAATTTAGTCTATTTTGACACTTTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCGGCTTTCTTATACTATGGT
TTTTTCAATAAAGGGGGCAGATATGTAGGGGGGGTTACCACCCCTTGATG
AATTTTCGATTCATCGCCAAAGGTTGGCACTTTAGGTTAAAAATCCACTC
TTACGTTTTTGATTAACTATTTACCTACCTACCCTTTTGATAAAAATCCC
CTCTAAACGATTTTCTTCAAATTTCTTCCTCGGTTTTTTAGCCCAGTCGC
TATCATTTGAATTCACCGGGGAAACTTCTCATCAGATTTTCCCATCATCA
CTCAATCAAGTGATCTTTCGTGTATCTACCAGCCTTGGCGAGAGCAACAA
TGCTGTTCGATATTTTATTCATAACGTCAACAAAGATGGCGAGGCTCCTC
CTGATCGTAGTTTGTGGGGTGCCCTGTCAGACCAGACTGATGCGGATGAT
TGTAGCGCCCTGGCAGAAACTTTTTATCCGACGCCTAGAAAATATTTTTG
TATAGACCATCGAACAGGGGATGTCAAACTAACCTCTTCATACAGCGTCT
CTGCAGCTTTGGAGAAATATCATATCGATATTAAAGTGAGCGATGGTACT
GATACAAAGCATCAGACTTATGAAATATCATACTGGCCCTCTGAATGTCA
ATACATACAAGCGCAGTACGATTCGATTCAAGCGAATAGCAACTGTTATC
ATTCGAGAAGTAAAACTTATAAATTTAATATTGATTTCGATGATACAAGT
GTTTATACAGCTATAACTTTAGATGAGCCAGGATTTTTAGTAGATATCTC
ATACAACAGAAGTAAACTTTCAGTGAACGACTTTTCAACCCTCAATATAA
CATACGTCGGTGATGATGGTTTTGTTACTGAGAAAATATTCACGGATGAG
AAATTTCCAAATCCAGTGCCCCTAATTGCAGGACAAACATTATTTAGAAT
GGCAATTAAAGATACAACTACCGGACAAAATTTACTGGCTCATAGTAAGG
GCTGGAGAATGTACGTTATTCTTGGGACGAATTTTTGTTCTGCGAATGCA
ACGTGTATTGATTCTACTGGTCATTGGTTGAACGAACAAGAACGGTTAAA
TGAATATTGTGTAGTGGATTCTTATGGGTATTTACACAAGTATGGGTATT
GTACAGGTATGTACGCTTTGTCTTTCTCTTAGTCATTTTGTACTTGACCT
TCCCATTACAATCTATCGACTTTCTATAGCTTTGAAAATAATACACAAAG
AGACAAACTCTCCAAAAAGAGAAATTTGTAAATTGGAAACTTTAAATTCC
TGGTGACTGGAGATGAGGAATTAAAGTTAACATCTCGCTTATGCAAGTAA
TTACAATTGCCAATTGACTTTACCATCTAGTAAAATGTTCATATTAATAA
CACACTATCACCCCTTTTGATCGATAGCTTTCGAAATATCATAAGAATGC
TTTTTGATTTAATATTTGGTTTTTATTTGCAGAGAATCCGACACGTTTTA
GTAATACCATAGCAACAACTTCGTCTCCAACCACAACAACGACCACCACC
ACGGAAGGTCCAACAATATCCGCCACTAGTAGTGGTAAGCTAAGTTCATC
TTATGACAAACTGAAATTTATCTCGTTTCACATTGCAACACCAATTATAA
CCACACTAGATACAGTACAAAGCCTACGGAGACCGCAAATTTGTTTCAAG
TCATGAAAACTAGTTATCAGGCATTGTTAACTGAAAAGGCCATCAAACCT
GTTAGAGTTAAGGAGACATTGGAGTAATACATGTTTTTTTATAGGCATAA
CGCTTATAAGCATATGAAGGCTCAGATTTACAGAATTCCAAACATAACAT
AAGCATACCATATTTTTCAAGTTGTCATTTTTATCTTAAATGGTTTGGTT
AAGGTTTGGTAGAGGTCAAGTAAAAAAAGAACTTTCCACGGCCCAAAATC
TGAACAAATTTTTACAAAATTTCTGAAATTTAACTAAAAACTTGGCTCGA
GGTGAATCATAAAGCATGATTCATAAGCATATAGTAAGCTATGCCTGGAT
GTATACACGAGCCTGACCAAGGGGCATACACTTGCTTATAAAAAAACATG
TAAAGAGATTCCACTGTATTGTGCTTTACAGAAAATGGCAAAAAGTTTCC
AAAAAGTGAGTTTTCATACTGACATTGTAGTGAATCGAAACTACACCTTA
ACTCGTCTTCTCTGTTACTATTGTTGCTGTTTCTAACTTATACTTCAAAT
TGCTATTTCTAACTTTCTTCTATAGATCCATGTCAAAACTATATTTTGGA
TAATGACCCAGAAAATTGGAAAAGGAGCACCGGGAATATAATTTCCTCCA
ACACTACCGACAAGTATTGCGATCGGCAGGGATGGCAACAAGGATGGCGA
CGTTTTGTGAGTGGTGCTGGAACCATGATACCCACCCAATGTCCACCTGC
TTTTGCGTGTGGTTTGTATTTTAAAGCTCATTCTTTTATTTTATTCTCAT
CATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTG
TTTATACAGCTATAACTTTAGATGAGCCAGGATTTTTAGTAGATATTTCA
TACAACAGAAGTAAACTTTCAGTGAACGACTTTTCAACCCTCAATATAAC
ATACGTCGGTGATGATGGTTTTGTTACTGAGAAAATATTCACGGATGAGA
AATTTCCAAATCCAGTGCCCCTAATTGCAGGACAAACATTATTTAGAATG
GCAATTAAAGATACAACTACCGGACAAAATTTACTGGCTCATAGTAAGGG
CTGGAGAATGTACGTTATTCTTGGGACGAATTTTTGTTCTGCGAATGCAA
CGTGTATTGATTCTACTGGTCATTGGTTGAACGAACAAGAACGGTTAAAT
GAATATTGTGTAGTGGATTCTTATGGGTATTTACACAAGTATGGGTATTG
TACAGGTATGTACGCTTTGTCTTTCTCTTAGTCATTTTGTACTTGACCTT
CCCATTACAATCTATCGACTTTCTATAGCTTTGAAAATAATACACAAAGA
GACAAACTCTCCAAAAAGAGAAATTTGTAAATTGGAAACTTTAAATTCCT
GGTGACTGGAGATGAGGAATTAAAGTTAACATCTCGCTTATGCAAGTAAT
TACAATTGCCAATTGACTTTACCATCTAGTAAAATGTTCATATTAATAAC
ACACTATCACCCCTTTTGATCGATAGCTTTCGAAATATCATAAGAATGCT
TTTTGATTTAATATTTGGTTTTTATTTGCAGAGAATCCGACACGTTTTAG
TAATACCATAGCAACAACTTCGTCTCCAACCACAACAACGACCACCACCA
CGGAAGGTCCAACAATATCCGCCACTAGTAGTGGTAAGCTAAGTTCATCT
TATGACAAACTGAAATTTATCTCGTTTCACATTGCAACACCAATTATAAC
CACACTAGATACAGTACAAAGCCTACGGAGACCGCAAATTTGTTTCAAGT
CATGAAAACTAGTTATCAGGCATTGTTAACTGAAAAGGCCATCAAACCTG
TTAGAGTTAAGGAGACATTGGAGTAATACATGTTTTTTTATAGGCATAAC
GCTTATAAGCATATGAAGGCTCAGATTTACAGAATTCCAAACATAACATA
AGCATACCATATTTTTCAAGTTGTCATTTTTATCTTAAATGGTTTGGTTA
AGGTTTGGTAGAGGTCAAGTAAAAAAAGAACTTTCCACGGCCCAAAATCT
GAACAAATTTTTACAAAATTTCTGAAATTTAACTAAAAACTTGGCTCGAG
GTGAATCATAAAGCATGATTCATAAGCATATAGTAAGCTATGCCTGGATG
TATACATGAGCCTGACCAAGGGGCATACACTTGCTTATAAAAAAACATGT
AAAGAGATTCCACTGTATTGTGCTTTACAGAAAATGGCAAAAAGTTTCCA
AAAAGTGAGTTTTCATACTGACATTGTAGTGAATCGAAACTACACCTTAA
CTCGTCTTCTCTGTTACTATTGTTGCTGTTTCTAACTTATACTTCAAATT
GCTATTTCTAACTTTCTTCTATAGATCCATGTCAAAACTATATTTTGGAT
AATGACCCAGAAAATTGGAAAAGGAGCA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00067488TCONS_00067488Clytia hemisphaericatranscript
TCONS_00067487TCONS_00067487Clytia hemisphaericatranscript
TCONS_00067486TCONS_00067486Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00067487-proteinTCONS_00067487-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:302150..307877 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.06	0	0	0	0	0.03	0	0	0	0	0	0	0	0	0	0	0	0.05	0	0	0.12	0.09	0.04	0.13	0.41	0.43	0.13	0.56	0.04	0.04