TCONS_00006664 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006664
Unique NameTCONS_00006664
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length478

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006664 ID=TCONS_00006664|Name=TCONS_00006664|organism=Clytia hemisphaerica|type=transcript|length=478bp
GAGTATAACGCGTATAAACTCCATATCAGTGGTTTCTCTGGAAATATTGG
ACAAGATAAGATGAATTATCATAATGGAATGAAATGGAGCACACGTGACC
GAGATAATGATCTAAGACCAGCTCATGATTGTGCTTATGATCAGAGAGGT
GCTTGGTGGTATAACGGTTGTGAGACAAGCAATCTGAATGGAATTTATGA
CTCCttcaataaagagaaaaatccCGATGAAGCGTTTGGTTGGAATCCCT
TCCGTTTGGAATTCTCTGAAATGAAAGTTCGACGGAAGTAATTGCCCGTG
TGGTGCTATCCTTGATAAAGACATTGACTACATTTCTACGTTTCCCTCTA
AAAAGGGTACTAATTTTCTTGAGAGTAATTTTTATGTTATGAAATCAGCC
TTTCGGGTATTTTAGAAACCAGGAAAATAAAATAGCGGAGAAAAATAAta
tattgaattgaattttattGAACTGCGG
Run BLAST on NCBI

transcript from alignment at sc0000069:510914..516643-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006664 ID=TCONS_00006664|Name=TCONS_00006664|organism=Clytia hemisphaerica|type=transcript|length=5730bp|location=Sequence derived from alignment at sc0000069:510914..516643- (Clytia hemisphaerica)
GAGTATAACGCGTATAAACTCCATATCAGTGGTTTCTCTGGAAATATTGG
ACAAGATAAGATGAATTATCATAATGGAATGAAATGGAGCACACGTGACC
GAGATAATGATCTAAGACCAGGTTCGGAAATAATTTTTATTTCAGATAGG
TACCCGACCAGCTGCCAGTTGGGTCTATTACGAAATTCTACAGTAGACTC
TTCGCCTATTCGAATCTTTGTATTATTCGAACTGACTCTTATCCCCCCTC
AAGGAAAAACCCTCTCGATGTACTTTCTATAATTTGAATTTCTCTGTAAT
TCGAACATCTAAGATTCCCCGTTGGAGTTCGAATTAGCGAAAGTCATCTG
TATGTCAGACGGTCGGACGGAAAGATAGGCTTTAGCGATTAAAACGTGTC
TTCTTTAAGTGGTGTCAGACCCGTTCTTTGTCTACTACAATGATTGTCAA
ATCTAACTTTTGTGGTCTAAAGAGAAATCATGGAAAACATTAGTGTTACA
TTCATGGTCAAAACCTAATCTTTACGAAGATTTCAAAATTCATTGCTGTA
TTTCACTTCACTATACATGAGATAAACTCTTGTACAGAGATTTGAATGTC
TTTTTTTCCTGTTGCAGTTGAATTCTCTATAACTCACACACACACACAAA
GTAGTTAAGGAAATTTTGAGTTATCAAGATTGGTTTATGAGGCATTGTCA
AGAAGAAAAGAAGACTTGTTTGAGTTAAGAAGTGTATAGAGGTTTGAGTT
ATGGAGACTTCACTGTAATTTATCTCGGAGAATTATTTAGTTTGTAGGTT
AAGTATTTACAGTTTTGAGTTATATCTTTAAAAATAGAATGAACCCGTTA
ATGCCACTTGCATCATAAAGAAATCGCTCAGGGATTACAGTTTTGAGTCT
TGACTTTNTACATCTGTCTAAACTTAAAAAGTCTAAGAGTTCTACTTAAT
TAGTATCAACTTATTCTTTTACTTTTTATACCCCCTGGAATTGATCATTT
TGGATATTGAACAGGCTTTAAAGATTCAAAAAGTGAAGCTTTATCGTAAA
GAATCTATCCAAAATTATATAGAGCAAAACATTGAAATAAAATACACTGA
AATGCCTGAAGATTGTGCCAGCATGAAACACCGTGTAGTAATTGTAAGTT
AGTTCTTTATTCCTTGAAATTTCGCTTGAATTTTTTTCGAATTTTTTTGA
GTACTTTGTGATTCTATTTATTTCAATATATAAAGAAAAACAGAATCAGG
GGGTACTTTTGCTCTGCCCATCTTGCACAAAACACCAAAATGATGTCTAT
CTGAGAGTCGTAACGTCCATAGAGCGTTAGATTAACATTAAAACAACGTC
GTCATAAAGATAGGTCGATACTCGTTGGAATTCAGTAGATATATAGATAG
GGAATTGCTAAAGGATCAATTCATTCTGCTAGTATAAAGGTCAAAGCTAA
GATGAAGTTTTTGATCCTACTTTTCTTGGTGACTGTTCTACCATCGAATG
TATCGACCACATGTAACGATTTTACTTTGAAACTTAATCTGTTGAAACAA
CATGTTGAAATGGTGACTAATTTGTTGACTTTGACCAATCAACGTTTGAC
AGATATCACTCAACAACTCAAACAAAACCTCACTAAGTCAAATGAAATAT
TGAATGAGAAACTAACCAAAACGAATGAAGAGCTTTACCAGAAAATAATA
CGCAATACACAAACAATCACAGAACAAATCACGAAAGATAATGAAGAACT
AGAACACAAAATCATTGAGAAATTGACCAAGAAAGACCAAAGTTTAACTC
AAAAGGTATCACAAATGACTGAAGACGTTCAATCATTAACGCAAAAAGAT
AAAACCCAGAACAGTTTTTGCCAAAGTAATTCCCATAGATGTGGCTCTTG
TTATTGTATCGAAGATTTGCGGATTCCTGATAAGCATTATTGCGATTGTC
GTATGAAACCCATTCGTCGTGATTGTAAAGAACATCATTTGCAAGGAGAA
AGGATCAATGGTTTATACCGAATCAACCATGACACTGATGGGAATGATGT
CTCTGTCTATTGTGATCAAACGACTGATGGAGGTATGTAGAATATTTAGA
CAATTCTTCTATTACCTTCGTTTTCTCCTTGATTTGAGCCTTATAAGCGT
TATGTTCCTTTTCCTGAGTCCTTGCACAGTTCTCCTTTTTAATTTTTTTT
ACTCAGGATACCGTCTAGAGCATTGAGTTTAATGCCCGAAGGGCTAGAGT
AGAATCTCTAACCTTTCCCAGGAAAGAAAAAATGAAGCCTCTTATTTCCC
ATTCAGAACGCGTCGCAATGATGAAAACAGAGTGTGTCTAGTGATTCCTT
TGTTTTTGAGGACTGCATTTTTTAAATCTAGCGATATATTTTACTTTCAA
TTCGGCGTTTGTGTAAAAACCACGCGCATGGTTGTATTTCCCATTTAGAA
GTTTCGAGTCAAGCCCTTGGACTTGGAAGTCAATGGTCTAGAGTCCTTCC
TCTGTTAGTTACTAACCCTATACATTACACGTTTTTTATAAGAACATGGA
AACATTTTTGAAGCCTTCGGATGTCCTTAACTTTTTGAGTTTTAAAGCTT
AAAAATGTTCTTAAAATGTTCTTATTTTCACCATTTTTACCCATTTTTCC
TAAGAATCGGGTGGTTTCGAGTCTGCAAAGCCTTGAAATGTTCTTAACTT
GTTTTTAACATTTTGGCCATCGAAGCTTTATGTTCTTATATAGTTTGTTC
TTATATATGAAACAGAAAAAACAAAAACAGTTTGCTCTTATAAAAAACAT
GCAAGGGAAATATTTAGTGAGCAGCGAAAACCTTAGAAAGCTTGTCTTTT
TTTATAGGTGGCTGGACAGTAATTCAAAGACGTGTTGACGGCACCACCAA
CTTCTTCCGTAATTGGCAAACCTACAAACAAGGGTTCGGTCAACTCCACT
ATGAACACTGGCTAGGGAACGATAACATACATCTTCTCACCAGACCACGA
GACAGTTACTCAGAAATACGATTTGATCTGCAAAGAAAAGATTATGGTCG
TAGGCAGTATGCAAAGTATTCATTGTTCAGGATTGATAATGAGTTGAACG
CGTATAAACTTNACAGTTTTTGCCAAAGTAATTCCCATAGATGTGGCTCT
TGTTATTGTATCGAAGATTTGCGGATTCCTGATAAGCATTATTGCGATTG
TCGTATGAAACCCATTCGTCGTGATTGTAAAGAACATCATTTGCAAGGAG
AAAGGATCAATGGTTTATACCGAATCAACCATGACACTGATGGGAATGAT
GTCTCTGTCTATTGTGATCAAACGACTGATGGAGGTATGTAGAATATTTA
GACAATTCTTCTATTACCTTCGTTTTCTCCTTGATTTGAGCCTTATAAGC
GTTATGTTCCTTTTCCTGAGTCCTTGCACAGTTCTCCTTTTTAATTTTTT
TTACTCAGGATACCGTCTAGAGCATTGAGTTTAATGCCCGAAGGGCTAGA
GTAGAATCTCTAACCTTTCCCAGGAAAGAAAAAATGAAGCCTCTTATTTC
CCATTCAGAACGCGTCGCAATGATGAAAACAGAGTGTGTCTAGTGATTCC
TTTGTTTTTGAGGACTGCATTTTTTAAATCTAGCAATATATTTTACTTTC
AATTCGGCGTTTGTGTAAAAACCACGCGCATGGTTGTATTTCCCATTTAG
AAGTTTCGAGTCAAGCCCTTAGACTTGGAAGTCAATGGTCTAGAGTCCTT
CCTCTGTTAGTTACTAACCCTATACATTACACGTTTTTTATAAGAACATT
TTGGAAGCCTTCGGATGTCCTTAACTTTTTGGTTTTTAAGTCTAAAAATG
TTCTTTAAAAGGTGCTTATTTTCACCATTTTTACCCATTTTTCCTTAGAA
ATCGAATGTTTGAGAAAAAAAAATGAATCTTAACTTGTTCTTGATATTTT
GGCCATCGAAGCCTAATGTTCTTTTATAGTTCGTTCTTATAAAAATACAT
ATAAGGGAACAAATTTTGGTGATTAAAAAAAACCCTAAGAAACTCTGTCT
TCTTTATAGGTGGCTGGACAGTAATTCAAAGACGTGTTGACGGAACAACC
AACTTTTTTCGTAATTGGCAAACCTACAAACAAGGATTCGGTCAACTCCA
CTATGAACACTGGCTTGGGAACGATAACATATATCTTCTCACCAGACCAC
GAGAAAGTCACTCTGAAATACTATTTGATCTGCAAAGAAAAGATTATGGT
CGCAGGCAATATGCAAAGTATTCACTTTTCAGGATTGATAACGAGTATAA
CGCGTATAAACTCCATATCAGTGGTTTCTCTGGAAATATTGGACAAGATA
AGATGAATTATCATAATGGAATGAAATGGAGCACACGTGACCGAGATAAT
GATCTAAGACCAGGTTCGGAAATAATTTTTATTTCAGATAGGTACCCGAC
CAGCTGCCAGTTGGGTCTATTACGAAATTCTACAGTAGACTCTTCGCCTA
TTCGAATCTTTGTATTATTCGAACTGACTCTTATCCCCCCTCAAGGAAAA
ACCCTCTCGATGTACTTTCTATAATTTGAATTTCTCTGTAATTCGAACAT
CTAAGATTCCCCGTTGGAGTTCGAATTAGCGAAAGTCATCTGTATGTCAG
ACGGTCGGACGGAAAGATTAAAACGTGTCTTCTTTAAGTGGTGTCAGACC
CGTTCTTTGTCAACTACAATGATTGACAAATCTAACTACTTTTGTGGTCT
AAAGAGAAATCATGGAAAGCATAAGTGTTACATTCATGGTCAAAACTCAT
GAAGAGTATGGCCGGGTATTCCCGGTCGGAATCAGAATCTTTCTCTGTGA
ACGGACCTTATCTTTACGAAGATTTCAAAATTCATTGCTGTATTTCACTT
CACTATACATGAGATAAACTCTTGTACAGAGATTAGTGATTAGTCCTTTT
TTCCCTGGTGCAGTTGAATTCTCTATAACTCAAACACACACACAAGCCCA
GCCGGCACACAACGTTGTTTCAACGTCTATCTAACGTTCTCAACGTCCAT
ATAACGTTAGATGAACGTTGAAACAACGTTGTGTGCCTGCTGGGAGTAGT
TAAGGAAATTTTGAGTTATCAAGATTGGTTTATGAGGCATTGTCAACTGA
ACAAGAAGAAAAGAAGACTTGTTTGAGTTAAGAAGTGTATAGAGGTTCGA
GCTATGGAGACTTCACTGTATTTTATCTCGGAGAATTTATTTAGTTTGTA
GGTTAAATGTTTACAGTTTTGAGTTATATCTTTAAAAATAGTTAATGCCA
CTTGCATCATAAAGAAATCGGTCAGGGATTACAGTTTTGAGTCTTGACTT
CCCTTCTTACATTGTTATTTCAGCTCATGATTGTGCTTATGATCAGAGAG
GTGCTTGGTGGTATAACGGTTGTGAGACAAGCAATCTGAATGGAATTTAT
GACTCCTTCAATAAAGAGAAAAATCCCGATGAAGCGTTTGGTTGGAATCC
CTTCCGTTTGGAATTCTCTGAAATGAAAGTTCGACGGAAGTAATTGCCCG
TGTGGTGCTATCCTTGATAAAGACATTGACTACATTTCTACGTTTCCCTC
TAAAAAGGGTACTAATTTTCTTGAGAGTAATTTTTATGTTATGAAATCAG
CCTTTCGGGTATTTTAGAAACCAGGAAAATAAAATAGCGGAGAAAAATAA
TATATTGAATTGAATTTTATTGAACTGCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003740XLOC_003740Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006664-exon-sc0000069-1575043694:516523..516643TCONS_00006664-exon-sc0000069-1575043694:516523..516643Clytia hemisphaericaexon
TCONS_00006664-exon-sc0000069-1575043694:510914..511270TCONS_00006664-exon-sc0000069-1575043694:510914..511270Clytia hemisphaericaexon
TCONS_00006664-exon-sc0000069-1510915933:516523..516643TCONS_00006664-exon-sc0000069-1510915933:516523..516643Clytia hemisphaericaexon
TCONS_00006664-exon-sc0000069-1510915933:510914..511270TCONS_00006664-exon-sc0000069-1510915933:510914..511270Clytia hemisphaericaexon
TCONS_00006664-exon-sc0000069-1491911889:516523..516643TCONS_00006664-exon-sc0000069-1491911889:516523..516643Clytia hemisphaericaexon
TCONS_00006664-exon-sc0000069-1491911889:510914..511270TCONS_00006664-exon-sc0000069-1491911889:510914..511270Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000069supercontigsc0000069:510914..516643 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.162397	0	0.0748901	0	0	0	0	0	0	0	0	0	0.915152	0.865858	0	0	0	0
Blast
[Close]
BLAST of TCONS_00006664 vs. Swiss-Prot (Human)
Match: TENR (Tenascin-R OS=Homo sapiens GN=TNR PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 7.556e-16
Identity = 39/97 (40.21%), Postives = 52/97 (53.61%), Query Frame = 1 
Query:    7 NAYKLHISGFSGNIGQDKMNYHNGMKWSTRDRDNDLRPAHDCAYDQRGAWWYNGCETSNLNGIYDSFNKEKNPDEAFGW-----NPFRLEFSEMKVR 282
            N YKL I  ++G  G D ++YH G  +ST DRDND+    +CA   +GAWWY  C  +NLNG Y     E    +   W     + F + F EMK+R
Sbjct: 1251 NLYKLRIGSYNGTAG-DSLSYHQGRPFSTEDRDNDV-AVTNCAMSYKGAWWYKNCHRTNLNGKYG----ESRHSQGINWYHWKGHEFSIPFVEMKMR 1341
The following BLAST results are available for this feature:
BLAST of TCONS_00006664 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TENR7.556e-1640.21Tenascin-R OS=Homo sapiens GN=TNR PE=1 SV=3[more]
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