TCONS_00066944 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066944
Unique NameTCONS_00066944
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1782

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066944 ID=TCONS_00066944|Name=TCONS_00066944|organism=Clytia hemisphaerica|type=transcript|length=1782bp
ACGGTGTGAAAACGATCGATTACGCAGGAGGTCGAGAACACGAAGATTTC
ATTAACTTCATGGTAGACCCAAAACCACCAAAGCCAAAGCAAGTGGAGAA
AGATTGGTCAGATGAAGTCAAGGACGTCGTCTTCCTTGAGCCGATGAACT
TTGACGATTtcgttgaaaaagaaaaatccgTTCTCGTCATGTTCTATGCC
CCATGGTGTGGTCACTGCAAGAAAATGAAACCAGGACTAGCTGAAGCTGC
CAAGATCGTCAACAATGCTAATGATATCGTTGGAAAGATAGCAGCGGTGG
ATTGCGTTAAACACAGTTCGTTGGCTGGCAAGTTCGAAGTAAGCGGATAT
CCAACATTGAAATACTTCAAAGACGGAAAAGAACAATTCAAATATAGAGG
TCAACGAACGAAAGATGCCCTCGTCGATTTCATGAAAAGCCCTTCTGAAC
AAGATTCATCAAGCAATCAACCACCACAAAAGACGTGGGCCGAagaatca
gaacacatcattcaACTCAACGATGCCACATTCACCGAGTTCATCCGAGA
CAAAGACGTCTTTGTCGCTTTCTATGCTCCATGGTGCGGTCATTGCAGTA
CCATGAAACATGCCTTCTTTGAAACTGCAAAGAAACTGAAAGAAGATAAT
TTCCCAGCCGTTTTGGCTGCTGTTGAGGCCACACAGAATAAAGATTTGGC
TAAACGAGAAGGAGTCAAAGGATATCCAACATCAATGGTAAATTTGTAGT
GAAATTCGAAGAGCAACGGACGGTGGAAAAAATGTATGCATTTTTACGGA
CGCAAGCCGAAGGAAAAGAACGAGAAAATCGATTGGACCAAGAGAAATGG
GAGGACCTTCCAAGCTCTGTGGAACATTTGAACGAAGAAAACTTCCAAAC
GTATTTACAACAAACCCAGCATGTGTTAGTGGCtttccacgtcaggtGGT
GTAAAACATGCGCTACTATGCGAACAGACTTGATGCAAGCTTCTTCACGA
TTGGCTGGACAAAAGGGCACCTTTGGAATCGCCGCTCTTAATTGTGATTT
ATATGGAGATTATTGCAACGAGCAAGGTGTAACATCATTCCCaacaataa
aatattataaacGAGGTGAATTTATGGAAAATTATTCCGCCTCCACGACT
GCTGATGACGTCACTAACTTCTTACAGACACGTCAAAAAACGGAACTGTA
ATAATGTAGATGGGGtctagtaaaatatttttctaggaAATTAAAGCATG
CATGCATTTTCATATCGTGCTAATTTTTTATATTGATAGTAACTTTTTAG
TGCTAATTCTTACTACTAACCTTTTGAATCACTTTCTACGCTTTTTTTCG
GAAAGGTAACACTTTGTTAATCATGGCTTCCGTTactcccccccccctca
aataatTTGCAATATATTCCAAATATACCGTTTAAGGGGGTAAAATAAGg
gtgaaaaatcggaaaaattcaTCTTCGCCGTTTAACCACGGTGGAAGAGT
TTTTGGCTCAGTTTGGCCCCTTAATCTGATTTGCATGCCGGGTGCCATGG
TAAGACGAACCTTTTGAATTATTTTGGTCAAATGACTGGATTTAAAACTT
TGGCAAACCAACTAGAATTCCCAACAGCTTTATAGATTTTTCTCTTAGGG
AATATAATTCCCATCCGATTAATTCTTTGGTGTAGGATACTAAGCTCACT
TCTAGggctttaaaaatgtttaaattttatctatatctttattgtgttta
atgaatttttataaacatccttcaaaaataat
Run BLAST on NCBI

protein sequence of TCONS_00066944-protein

>TCONS_00066944-protein ID=TCONS_00066944-protein|Name=TCONS_00066944-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
GVKTIDYAGGREHEDFINFMVDPKPPKPKQVEKDWSDEVKDVVFLEPMNF
DDFVEKEKSVLVMFYAPWCGHCKKMKPGLAEAAKIVNNANDIVGKIAAVD
CVKHSSLAGKFEVSGYPTLKYFKDGKEQFKYRGQRTKDALVDFMKSPSEQ
DSSSNQPPQKTWAEESEHIIQLNDATFTEFIRDKDVFVAFYAPWCGHCST
MKHAFFETAKKLKEDNFPAVLAAVEATQNKDLAKREGVKGYPTSMVNL
Run BLAST on NCBI

transcript from alignment at scaffold_462:70537..76922-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066944 ID=TCONS_00066944|Name=TCONS_00066944|organism=Clytia hemisphaerica|type=transcript|length=6386bp|location=Sequence derived from alignment at scaffold_462:70537..76922- (Clytia hemisphaerica)
ACGGTGTGAAAACGATCGATTACGCAGGAGGTCGAGAACACGAAGATTTC
ATTAACTTCATGGTAGAGTAAGTGCTTCGATTTTTCACTTATTTCCCATT
CAAAACGCGTGACTCGGGTGTTTTTCACTCAAACGCCAGATTGAAAGTAA
AAACTATCGCAAGATTTTGAAAAATTATGCCGCAAACAAGGAAAGCACTG
GATTCGTCATTCCAAAAGCGTCTTAAATCTTAAGGCTTCACTTTTTCTTG
CTTGAAAAGGTTGAAGATTCCTCTCCAGCCCTTCGGGCTTTTATGAAAGT
AGGACATCAGAAATGAACATTCCTGTATAAGTCAATAGATGCAAAATAAA
GTAAATCGAACGAGTGATTGAAAGCACAGGGAACTATTGTTGAATTGAGA
ATATTATTTATTATAGTTAACGATTCCAAAGGCTTGAAGCAGACCACGTG
ACCTGACTTTGTCATGAACAACCCCTGATAAAATTTTAGGATCACCAAAT
CATTGAATAACTTTCAAATCTATATTATTTGTTTTATTACCATAGCCCAA
AACCACCAAAGCCAAAGCAAGTGGAGAAAGATTGGTCAGATGAAGTCAAG
GACGTCGTCTTCCTTGAGCCGATGAACTTTGACGATTTCGTTGAAAAAGA
AAAATCCGTTCTCGTCATGTTCTATGCCCCATGTAAGTTTTGTTTGGGCG
AAATTTTGGATGTGTAAACTTTTTTAAATTAAAATTCGATCCCTTTTTGC
CTTAAAATTTGTGTACAGATTTCAACTCTAAAACTTTTTTGAATATCATA
AAGAGTATGCGTTAGATATAATCTGTGTTCAGTGCTGATGGATTGACATA
TAGTAGAAAGGCACTTATGGTGAAAATGAAACTCTCTTTAATTTGTTTTC
GTATAAGTTCTTCACTGTTCTTTTCCAAATCAGGGTGTGGTCACTGCAAG
AAAATGAAACCAGGACTAGCTGAAGCTGCCAAGATCGTCAACAATGCTAA
TGATGTACGGGCACTTTTTATCAATATCTTCACTTTGTAAACCTAAGTTA
AATCGGTTCTAGAACTTAAACAGTTGCAGGCTGAACTTATTTTACCCTCC
TTCCATGGGCCAAATACCATGGTCAGCTGGCTTAAGCATTTTAGACCTAA
GGCCCTTGTTTCAAAAAAATTTATTGGCCTTTTCGACTTTTTTCATGATT
TGTCGAAGAATTAAAATGCAAACAAATGGTTTTTTAAAGAGTCCAATCAG
TGTAGACCTAAAGCTCTAAACCAGCATCTAATAACATGAAAACCAGAATA
TGATTCTTCAATGGGAATCAAAATATAAAGTGCACTTACAAACATCAATT
TGTCAGATCTAACAAAATTAATAACCGCACTGTCATCATTGACAATAAAA
CAAACGATTTTCTGTCAAGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCGAGAACGCTCCGCGGACTCCTGCGCG
GGTGAAAAACTTTAATCTGTCCATCATTTTCTCAAGCGAAGAGTACGCGA
AGCGATTCTAGCCTTACGATAGTGCCGCGGGTCATCAATGGATAGTATTC
AATTATCATTATCCCTATATTTTCATTCCTAAAACTTTTCCAAAAAAAGG
AAAAATAGAAAAGTTGTATTTTTTACTGTTCTATTCACATACTGAATTTG
AAAGATCTTCTATGTGGCGTTTTTTTACAAACTTCAAAAAACTGATTTTT
GTTCCGCCTTTGCGGGACTTTGGCTTAAGTGCTTGAGTGCAGCATAGGGT
ACACAGTCCAAACATGCGTTTCCCGTAATTTTTGTCTGAAGAGTTAGGTC
TACACTGCCAATCAGGGGGTCTTTTTTCATTTTTCCGAGGCTTTAAAAAG
TCATTCTAAAATTTCCACGGGGTGAAAGTCTGATTTCAGTTCGTCCACCC
TCATTTTAAGGTATGAAAAGATTTTCCTAGGGTACTTGTGCAAACTTCGA
TTCAATTTTCAATAGTTTTTTTTTACTTGAAAAAGTTCGTCCACCCCCCC
CCCCTTTNTTCAGTTCGTCCACCCTCATTTTAAGGTATGAAAATATTTTC
CTAGGGTACTTGTGCAAATTTCGATTCAATTTTCAATAGTTTTTTTTTAC
TTGAAAAAGTTCGTCCACCCCCCATGTATGGTTTTTAATGGGACAGCTTA
ATATGAAACTGTAATCTTTCCCTTTCAGATCGTTGGAAAGATAGCAGCGG
TGGATTGCGTTAAACACAGTTCGTTGGCTGGCAAGTTCGAAGTAAGCGGA
TATCCAACATTGAAATACTTCAAAGACGGAAAAGAACAATTCAAATATAG
AGGTCAACGAACGAAAGATGCCCTCGTCGATTTCATGAAAAGGTAACCAA
ATTCTTCTTTCTTTCATTCTGTTTTTTTCTATTTGAAAGTTTGATCAGAC
TTCAACTTCATTTTAGCCTAATTTTGCGAATGTTTGAGTCTACAGGCCAT
GGAAAGAGTCTAATTTTGCTTAAGATTTTCACGTTCATTGCTTATGTTTT
CCTTGCAAAATTGTTCATAATAATGAACTTGGGTGAGCGTGGTCAGCATT
TTCGATCTGACATATCTTTTTTCTAACGAATTTTAGAATGAATTAGTCTG
GATTAAAATTTGTTACCCTTTTTAAATTACCTTGGAATGCTCTATCTAGT
AAATAGTTGACGATTATAATTTTACTTTCCAGCCCTTCTGAACAAGATTC
ATCAAGCAATCAACCACCACAAAAGACGTGGGCCGAAGAATCAGAACACA
TCATTCAACTCAACGATGCCACATTCACCGAGTTCATCCGAGACAAAGAC
GTCTTTGTCGCTTTCTATGCTCCATGGTGCGGTCATTGCAGTACCATGAA
ACATGCCTTCTTTGAAACTGCAAAGAAACTGAAAGAAGATAATTTCCCAG
CCGTTTTGGCTGCTGTTGAGGCCACACAGAATAAAGATTTGGCTAAACGA
GAAGGAGTCAAAGGATATCCAACATGTGAGTTCCTGTGCTCTTATTGAGT
TACACATTTTATTCATATTGTTTTTGAATAAAACGGTTTCTTGATCTAAG
AGGACTAAGCTACCCTAAATGCTAACACCATAGCTTAGTAGTGGTTAGAA
TTAAATTGTTTTAAATGTCGTATGATTAAGGCCTGTCTTTAACTGTTATG
ACCCCTCCCAACATTTATTCCCCTTTTTACTCAATGTATTCAATATTTAT
CAATATCAACTATTGAATAATCTCTCGTCTTCTTTCTTTCGTTTCAGTGA
ACTTTTACAGGTAAGTTGACATTTTCATAGTTTCATTTATATCATACCGA
CCAAATTCCACTAGTTTGAGTTGAACAACTACTCTATTCTCCAGACAACA
TTTGTACGGCGTGCTGCCAAAATTACACTTTTTTGTAGCTTCCACATAGA
ACAGTGTTGCTTTCTTCAAGATGATCATTGTTACCATTTCCTTTGCTCGT
TTATATTTGTCCACTTTGCCCCGACATTTTAATATCTGTTTATCTCTAAA
TGGTTTCACAAAGCTTTTTGTTTCCTATGAATCAAACATGATATTTTTTC
CCTTCAAAGCAATGGTAAATTTGTAGTGAAATTCGAAGAGCAACGGACGG
TGGAAAAAATGTATGCATTTTTACGGACGCAAGCCGAAGGAAAAGAACGA
GAAAATCGATTGGACCAAGAGAAATGGGAGGACCTTCCAAGCTCTGTGGA
ACATTTGAACGAAGAAAACTTCCAAACGTATTTACAACAAACCCAGCATG
TGTTAGTGGCTTTCCACGTCAGGTGTAAGTAATGATATACGCTTTCATCT
ATACTAGCTGCGTTTTGTGTAGAGTTTTTTTCACTCAAAAGCTAGTCTAC
TAGGCCTCTCATATTTTAGGGTTTTTTTATTCTGATTCTGATCACTCCAC
GCATGGTACCTATTTACTCCAAATGACATGTCTTAGTGAAAGATACTGCG
CAGGTTGGCAGACCGCTTCGATCTTTTTCATCAAAATTTTGGATGATTGG
CTGGAGTAAAACAATCGTCGATCATAAACGCACCCAGTCGCTTTCACATT
CATTTTCAAGTTAAGAGTAACGCGATTTTTATTGTTTTTTTTTATGTCAG
ATCATCACATTCGCCATAAATCTCTTTAAAGCAGAGCGTGTCTTTTAACC
CCCATTGTTTTGACCTATTCGAAACTTCTGGGATCGCAAGATGGATAAAG
TTAACCATCTTTTAAACATCTATTTCAAGGTAGGACCGGAAGGTTGGGTG
ATACCTGGGAAGATACTATTATATCTTAATCTTCTAATTAGTAAAATCCT
CGAACCCTTGTGTTTAGACTACGAAAGTACGTTTTCATATTTGTCACTAC
TGTTCAATATCTCAATTTTTGTTTTCCTCATTTTCGTTCAGGGTNGTGTT
TAGACTACGAAAGTACATTTTCATATTTGTCACTACTGTTCAATATCTCA
ATTTTTGTTTTCCTCATTTTCGTTCAGGGTGTAAAACATGCGCTACTATG
CGAACAGACTTGATGCAAGCTTCTTCACGATTGGCTGGACAAAAGGGCAC
CTTTGGAATCGCCGCTCTTAATTGTGATTTATATGGAGGTAAGAATGAAT
ATAAGTTTTTAGTATCCGATTACTGTGGTTTGGTATTAAATAGTTTTTTG
ACGAACAAATATGATTCTTACTTTCAGCATTTAGTTTTTTTAAACAAGAT
ATATTTTGGCAACATTCGACGTCGAGTTATAATCTCAGAAATCTTTCCTC
ATATTTTTCGAAAAATCTTTCGTCAAAACATCTTCTGTCAGATTTTATTA
TTAATATTTTTCATCAAGAATTCTACGAATTTCTTTCGTTAAAATATTTT
TCCAAAAATATTTCGTCAAATATTCTTTAAAGAAAATCGTTTATCAAATA
CTTTTCAAAAAAGATCAAAAATCCTTCTTTAAATAATCTTCCAAAAATTT
TCCGTCAAATATTCTTTAAAATTTTTCAAAAATCCTTCGTTTTCTCCAAG
AATCTTTTTTCAATTACTCTTCCAAAGAATTTCGTCAAATATTCTTTAAA
AAATTTCGTCAAATATTCTTTAAAAAATTTCATCAAATATTCTATGGAAA
ATTTCACAAATCATTCGTCAATTACTCTTCCAAAAATTTTTCGTCAAATT
TTATTCAAGAAATCTTTCATCAAATATGTTTAAAAGAATTTTGCGTCAAA
TTTTATTCAAAATGACTTTCATCGAATGCTCTTTCAAAAATCTTTCGTCT
AATGCGCTTCAAATAATCTTTAGTCAAATATTCTTCGAGTACTCTTTTAT
CGAATATTCTACCAAAAATAGTTCGTCAAATTTTCTTCACAAAATCTTTT
ATCCAAAAAAATCTTTTAAATTATTTTTCAAAGATTATTTTTTCCAAATA
TATTTTGTGCCTATTGGTCGTTTTTTTTCAAATCTTATTCTAATTGCTCC
ATTATTTTTTAGATTATTGCAACGAGCAAGGTGTAACATCATTCCCAACA
ATAAAATATTATAAACGAGGTGAATTTATGGAAAATTATTCCGCCTCCAC
GACTGCTGATGACGTCACTAACTTCTTACAGACACGTCAAAAAACGGAAC
TGTAATAATGTAGATGGGGTCTAGTAAAATATTTTTCTAGGAAATTAAAG
CATGCATGCATTTTCATATCGTGCTAATTTTTTATATTGATAGTAACTTT
TTAGTGCTAATTCTTACTACTAACCTTTTGAATCACTTTCTACGCTTTTT
TTCGGAAAGGTAACACTTTGTTAATCATGGCTTCCGTTACTCCCCCCCCC
CTCAAATAATTTGCAATATATTCCAAATATACCGTTTAAGGGGGTAAAAT
AAGGGTGAAAAATCGGAAAAATTCATCTTCGCCGTTTAACCACGGTGGAA
GAGTTTTTGGCTCAGTTTGGCCCCTTAATCTGATTTGCATGCCGGGTGCC
ATGGTAAGACGAACCTTTTGAATTATTTTGGTCAAATGACTGGATTTAAA
ACTTTGGCAAACCAACTAGAATTCCCAACAGCTTTATAGATTTTTCTCTT
AGGGAATATAATTCCCATCCGATTAATTCTTTGGTGTAGGATACTAAGCT
CACTTCTAGGGCTTTAAAAATGTTTAAATTTTATCTATATCTTTATTGTG
TTTAATGAATTTTTATAAACATCCTTCAAAAATAAT

Coding sequence (CDS) from alignment at scaffold_462:70537..76922-

>TCONS_00066944 ID=TCONS_00066944|Name=TCONS_00066944|organism=Clytia hemisphaerica|type=CDS|length=4482bp|location=Sequence derived from alignment at scaffold_462:70537..76922- (Clytia hemisphaerica)
CAATGGTAAATTTGTAGCCCTTCTGAACAAGATTCATCAAGCAATCAACC
ACCACAAAAGACGTGGGCCGAAGAATCAGAACACATCATTCAACTCAACG
ATGCCACATTCACCGAGTTCATCCGAGACAAAGACGTCTTTGTCGCTTTC
TATGCTCCATGGTGCGGTCATTGCAGTACCATGAAACATGCCTTCTTTGA
AACTGCAAAGAAACTGAAAGAAGATAATTTCCCAGCCGTTTTGGCTGCTG
TTGAGGCCACACAGAATAAAGATTTGGCTAAACGAGAAGGAGTCAAAGGA
TATCCAACATATCGTTGGAAAGATAGCAGCGGTGGATTGCGTTAAACACA
GTTCGTTGGCTGGCAAGTTCGAAGTAAGCGGATATCCAACATTGAAATAC
TTCAAAGACGGAAAAGAACAATTCAAATATAGAGGTCAACGAACGAAAGA
TGCCCTCGTCGATTTCATGAAAAGGGTGTGGTCACTGCAAGAAAATGAAA
CCAGGACTAGCTGAAGCTGCCAAGATCGTCAACAATGCTAATGATCCCAA
AACCACCAAAGCCAAAGCAAGTGGAGAAAGATTGGTCAGATGAAGTCAAG
GACGTCGTCTTCCTTGAGCCGATGAACTTTGACGATTTCGTTGAAAAAGA
AAAATCCGTTCTCGTCATGTTCTATGCCCCATGGTGTGAAAACGATCGAT
TACGCAGGAGGTCGAGAACACGAAGATTTCATTAACTTCATGGTAGACAA
TGGTAAATTTGTAGCCCTTCTGAACAAGATTCATCAAGCAATCAACCACC
ACAAAAGACGTGGGCCGAAGAATCAGAACACATCATTCAACTCAACGATG
CCACATTCACCGAGTTCATCCGAGACAAAGACGTCTTTGTCGCTTTCTAT
GCTCCATGGTGCGGTCATTGCAGTACCATGAAACATGCCTTCTTTGAAAC
TGCAAAGAAACTGAAAGAAGATAATTTCCCAGCCGTTTTGGCTGCTGTTG
AGGCCACACAGAATAAAGATTTGGCTAAACGAGAAGGAGTCAAAGGATAT
CCAACATATCGTTGGAAAGATAGCAGCGGTGGATTGCGTTAAACACAGTT
CGTTGGCTGGCAAGTTCGAAGTAAGCGGATATCCAACATTGAAATACTTC
AAAGACGGAAAAGAACAATTCAAATATAGAGGTCAACGAACGAAAGATGC
CCTCGTCGATTTCATGAAAAGGGTGTGGTCACTGCAAGAAAATGAAACCA
GGACTAGCTGAAGCTGCCAAGATCGTCAACAATGCTAATGATCCCAAAAC
CACCAAAGCCAAAGCAAGTGGAGAAAGATTGGTCAGATGAAGTCAAGGAC
GTCGTCTTCCTTGAGCCGATGAACTTTGACGATTTCGTTGAAAAAGAAAA
ATCCGTTCTCGTCATGTTCTATGCCCCATGGTGTGAAAACGATCGATTAC
GCAGGAGGTCGAGAACACGAAGATTTCATTAACTTCATGGTAGACAATGG
TAAATTTGTAGCCCTTCTGAACAAGATTCATCAAGCAATCAACCACCACA
AAAGACGTGGGCCGAAGAATCAGAACACATCATTCAACTCAACGATGCCA
CATTCACCGAGTTCATCCGAGACAAAGACGTCTTTGTCGCTTTCTATGCT
CCATGGTGCGGTCATTGCAGTACCATGAAACATGCCTTCTTTGAAACTGC
AAAGAAACTGAAAGAAGATAATTTCCCAGCCGTTTTGGCTGCTGTTGAGG
CCACACAGAATAAAGATTTGGCTAAACGAGAAGGAGTCAAAGGATATCCA
ACATATCGTTGGAAAGATAGCAGCGGTGGATTGCGTTAAACACAGTTCGT
TGGCTGGCAAGTTCGAAGTAAGCGGATATCCAACATTGAAATACTTCAAA
GACGGAAAAGAACAATTCAAATATAGAGGTCAACGAACGAAAGATGCCCT
CGTCGATTTCATGAAAAGGGTGTGGTCACTGCAAGAAAATGAAACCAGGA
CTAGCTGAAGCTGCCAAGATCGTCAACAATGCTAATGATCCCAAAACCAC
CAAAGCCAAAGCAAGTGGAGAAAGATTGGTCAGATGAAGTCAAGGACGTC
GTCTTCCTTGAGCCGATGAACTTTGACGATTTCGTTGAAAAAGAAAAATC
CGTTCTCGTCATGTTCTATGCCCCATGGTGTGAAAACGATCGATTACGCA
GGAGGTCGAGAACACGAAGATTTCATTAACTTCATGGTAGACAATGGTAA
ATTTGTAGCCCTTCTGAACAAGATTCATCAAGCAATCAACCACCACAAAA
GACGTGGGCCGAAGAATCAGAACACATCATTCAACTCAACGATGCCACAT
TCACCGAGTTCATCCGAGACAAAGACGTCTTTGTCGCTTTCTATGCTCCA
TGGTGCGGTCATTGCAGTACCATGAAACATGCCTTCTTTGAAACTGCAAA
GAAACTGAAAGAAGATAATTTCCCAGCCGTTTTGGCTGCTGTTGAGGCCA
CACAGAATAAAGATTTGGCTAAACGAGAAGGAGTCAAAGGATATCCAACA
TATCGTTGGAAAGATAGCAGCGGTGGATTGCGTTAAACACAGTTCGTTGG
CTGGCAAGTTCGAAGTAAGCGGATATCCAACATTGAAATACTTCAAAGAC
GGAAAAGAACAATTCAAATATAGAGGTCAACGAACGAAAGATGCCCTCGT
CGATTTCATGAAAAGGGTGTGGTCACTGCAAGAAAATGAAACCAGGACTA
GCTGAAGCTGCCAAGATCGTCAACAATGCTAATGATCCCAAAACCACCAA
AGCCAAAGCAAGTGGAGAAAGATTGGTCAGATGAAGTCAAGGACGTCGTC
TTCCTTGAGCCGATGAACTTTGACGATTTCGTTGAAAAAGAAAAATCCGT
TCTCGTCATGTTCTATGCCCCATGGTGTGAAAACGATCGATTACGCAGGA
GGTCGAGAACACGAAGATTTCATTAACTTCATGGTAGACAATGGTAAATT
TGTAGCCCTTCTGAACAAGATTCATCAAGCAATCAACCACCACAAAAGAC
GTGGGCCGAAGAATCAGAACACATCATTCAACTCAACGATGCCACATTCA
CCGAGTTCATCCGAGACAAAGACGTCTTTGTCGCTTTCTATGCTCCATGG
TGCGGTCATTGCAGTACCATGAAACATGCCTTCTTTGAAACTGCAAAGAA
ACTGAAAGAAGATAATTTCCCAGCCGTTTTGGCTGCTGTTGAGGCCACAC
AGAATAAAGATTTGGCTAAACGAGAAGGAGTCAAAGGATATCCAACATAT
CGTTGGAAAGATAGCAGCGGTGGATTGCGTTAAACACAGTTCGTTGGCTG
GCAAGTTCGAAGTAAGCGGATATCCAACATTGAAATACTTCAAAGACGGA
AAAGAACAATTCAAATATAGAGGTCAACGAACGAAAGATGCCCTCGTCGA
TTTCATGAAAAGGGTGTGGTCACTGCAAGAAAATGAAACCAGGACTAGCT
GAAGCTGCCAAGATCGTCAACAATGCTAATGATCCCAAAACCACCAAAGC
CAAAGCAAGTGGAGAAAGATTGGTCAGATGAAGTCAAGGACGTCGTCTTC
CTTGAGCCGATGAACTTTGACGATTTCGTTGAAAAAGAAAAATCCGTTCT
CGTCATGTTCTATGCCCCATGGTGTGAAAACGATCGATTACGCAGGAGGT
CGAGAACACGAAGATTTCATTAACTTCATGGTAGACAATGGTAAATTTGT
AGCCCTTCTGAACAAGATTCATCAAGCAATCAACCACCACAAAAGACGTG
GGCCGAAGAATCAGAACACATCATTCAACTCAACGATGCCACATTCACCG
AGTTCATCCGAGACAAAGACGTCTTTGTCGCTTTCTATGCTCCATGGTGC
GGTCATTGCAGTACCATGAAACATGCCTTCTTTGAAACTGCAAAGAAACT
GAAAGAAGATAATTTCCCAGCCGTTTTGGCTGCTGTTGAGGCCACACAGA
ATAAAGATTTGGCTAAACGAGAAGGAGTCAAAGGATATCCAACATATCGT
TGGAAAGATAGCAGCGGTGGATTGCGTTAAACACAGTTCGTTGGCTGGCA
AGTTCGAAGTAAGCGGATATCCAACATTGAAATACTTCAAAGACGGAAAA
GAACAATTCAAATATAGAGGTCAACGAACGAAAGATGCCCTCGTCGATTT
CATGAAAAGGGTGTGGTCACTGCAAGAAAATGAAACCAGGACTAGCTGAA
GCTGCCAAGATCGTCAACAATGCTAATGATCCCAAAACCACCAAAGCCAA
AGCAAGTGGAGAAAGATTGGTCAGATGAAGTCAAGGACGTCGTCTTCCTT
GAGCCGATGAACTTTGACGATTTCGTTGAAAAAGAAAAATCCGTTCTCGT
CATGTTCTATGCCCCATGGTGTGAAAACGATCGATTACGCAGGAGGTCGA
GAACACGAAGATTTCATTAACTTCATGGTAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041838XLOC_041838Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066944-proteinTCONS_00066944-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066944-exon-scaffold_462-1575043694:76856..76922TCONS_00066944-exon-scaffold_462-1575043694:76856..76922Clytia hemisphaericaexon
TCONS_00066944-exon-scaffold_462-1575043694:76241..76377TCONS_00066944-exon-scaffold_462-1575043694:76241..76377Clytia hemisphaericaexon
TCONS_00066944-exon-scaffold_462-1575043694:75919..75989TCONS_00066944-exon-scaffold_462-1575043694:75919..75989Clytia hemisphaericaexon
TCONS_00066944-exon-scaffold_462-1575043694:74381..74544TCONS_00066944-exon-scaffold_462-1575043694:74381..74544Clytia hemisphaericaexon
TCONS_00066944-exon-scaffold_462-1575043694:73748..74040TCONS_00066944-exon-scaffold_462-1575043694:73748..74040Clytia hemisphaericaexon
TCONS_00066944-exon-scaffold_462-1575043694:72949..73163TCONS_00066944-exon-scaffold_462-1575043694:72949..73163Clytia hemisphaericaexon
TCONS_00066944-exon-scaffold_462-1575043694:72135..72245TCONS_00066944-exon-scaffold_462-1575043694:72135..72245Clytia hemisphaericaexon
TCONS_00066944-exon-scaffold_462-1575043694:70537..71260TCONS_00066944-exon-scaffold_462-1575043694:70537..71260Clytia hemisphaericaexon
TCONS_00066944-exon-scaffold_462-1510915933:76856..76922TCONS_00066944-exon-scaffold_462-1510915933:76856..76922Clytia hemisphaericaexon
TCONS_00066944-exon-scaffold_462-1510915933:76241..76377TCONS_00066944-exon-scaffold_462-1510915933:76241..76377Clytia hemisphaericaexon
TCONS_00066944-exon-scaffold_462-1510915933:75919..75989TCONS_00066944-exon-scaffold_462-1510915933:75919..75989Clytia hemisphaericaexon
TCONS_00066944-exon-scaffold_462-1510915933:74381..74544TCONS_00066944-exon-scaffold_462-1510915933:74381..74544Clytia hemisphaericaexon
TCONS_00066944-exon-scaffold_462-1510915933:73748..74040TCONS_00066944-exon-scaffold_462-1510915933:73748..74040Clytia hemisphaericaexon
TCONS_00066944-exon-scaffold_462-1510915933:72949..73163TCONS_00066944-exon-scaffold_462-1510915933:72949..73163Clytia hemisphaericaexon
TCONS_00066944-exon-scaffold_462-1510915933:72135..72245TCONS_00066944-exon-scaffold_462-1510915933:72135..72245Clytia hemisphaericaexon
TCONS_00066944-exon-scaffold_462-1510915933:70537..71260TCONS_00066944-exon-scaffold_462-1510915933:70537..71260Clytia hemisphaericaexon
TCONS_00066944-exon-scaffold_462-1491911889:76856..76922TCONS_00066944-exon-scaffold_462-1491911889:76856..76922Clytia hemisphaericaexon
TCONS_00066944-exon-scaffold_462-1491911889:76241..76377TCONS_00066944-exon-scaffold_462-1491911889:76241..76377Clytia hemisphaericaexon
TCONS_00066944-exon-scaffold_462-1491911889:75919..75989TCONS_00066944-exon-scaffold_462-1491911889:75919..75989Clytia hemisphaericaexon
TCONS_00066944-exon-scaffold_462-1491911889:74381..74544TCONS_00066944-exon-scaffold_462-1491911889:74381..74544Clytia hemisphaericaexon
TCONS_00066944-exon-scaffold_462-1491911889:73748..74040TCONS_00066944-exon-scaffold_462-1491911889:73748..74040Clytia hemisphaericaexon
TCONS_00066944-exon-scaffold_462-1491911889:72949..73163TCONS_00066944-exon-scaffold_462-1491911889:72949..73163Clytia hemisphaericaexon
TCONS_00066944-exon-scaffold_462-1491911889:72135..72245TCONS_00066944-exon-scaffold_462-1491911889:72135..72245Clytia hemisphaericaexon
TCONS_00066944-exon-scaffold_462-1491911889:70537..71260TCONS_00066944-exon-scaffold_462-1491911889:70537..71260Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:70537..76922 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
61.6857	57.8439	41.1146	41.7482	182.524	142.502	124.919	126.693	99.7814	112.154	80.3649	126.507	74.0104	74.8978	99.0879	120.245	78.8323	78.0934	42.4368	54.9694	43.7442	48.694	58.1596	58.6591	37.2676	41.6457	33.8952	28.1206	104.69	77.5864
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005788Disulphide_isomerase
IPR013766Thioredoxin_domain
IPR017937Thioredoxin_CS
IPR012336Thioredoxin-like_fold
Vocabulary: Molecular Function
TermDefinition
GO:0016853isomerase activity
Vocabulary: Biological Process
TermDefinition
GO:0045454cell redox homeostasis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045454 cell redox homeostasis
molecular_function GO:0016853 isomerase activity
Blast
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BLAST of TCONS_00066944 vs. Swiss-Prot (Human)
Match: PDIA5 (Protein disulfide-isomerase A5 OS=Homo sapiens GN=PDIA5 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 8.541e-39
Identity = 98/237 (41.35%), Postives = 141/237 (59.49%), Query Frame = 3 
Query:   30 GREHEDFINFMVDPKPPKPKQVEKDWSDEVKDVVFLEPMNFDDFVEKEKSVLVMFYAPWCGHCKKMKPGLAEAAKIVNNANDIVGKIAAVDCVKHSSLAGKFEVSGYPTLKYFKDGKEQFKYRGQRTKDALVDFMKSPSEQDSSSNQPPQKTWAEESEHIIQLNDATFTEFI-RDKDVFVAFYAPWCGHCSTMKHAFFETAKKLKEDNFPAVLAAVEAT--QNKDLAKREGVKGYPT 731
            G   ED + ++ +P+PP+P+  E  W+DE   V  L   +FD FV++  SVLVMF+APWCGHCKKMKP   +AA+ ++   D  G +AAVD   + +LA +F +S +PTLKYFK+G E++     RTK   +++M     Q+  +  PP+ TW E+   ++ L    F E + + K   V FYAPWC HC  +   F  TA   K+D   A  AAV+    +N+DL ++E VKGYPT
Sbjct:  246 GSTAEDIVEWLKNPQPPQPQVPETPWADEGGSVYHLTDEDFDQFVKEHSSVLVMFHAPWCGHCKKMKPEFEKAAEALHGEADSSGVLAAVDATVNKALAERFHISEFPTLKYFKNG-EKYAVPVLRTKKKFLEWM-----QNPEAPPPPEPTWEEQQTSVLHLVGDNFRETLKKKKHTLVMFYAPWCPHCKKVIPHFTATADAFKDDRKIAC-AAVDCVKDKNQDLCQQEAVKGYPT 475

HSP 2 Score: 125.561 bits (314), Expect = 1.204e-30
Identity = 84/250 (33.60%), Postives = 131/250 (52.40%), Query Frame = 3 
Query:    3 GVKTIDYAGGREHEDFINFMVDPKPPKPKQVEKDWSDE--VKDVVFLEP-MNFDDFVEKE-KSVLVMFYAPWCGHCKKMKPGLAEAAKIVNNANDIVGKIAAVDCVKHSSLAGKFEVSGYPTLKYFKDGKEQFKYRGQ-RTKDALVDFMKSPSEQDSSSNQPPQKTWAEESEHIIQLNDATFTEFIRD-KDVFVAFYAPWCGHCSTMKHAFFETAKKLK-EDNFPAVLAAVEATQNKDLAKREGVKGYPT 731
            G    +Y      +  + F+ DPK P        W ++   KDVV L+   +F   ++KE K +L+MFYAPWC  CK+M P   +AA  +     + G    V   +  ++  ++ V G+PT+ YF+ G+  F+Y     T + +V+++K+P        + P   WA+E   +  L D  F +F+++   V V F+APWCGHC  MK  F + A+ L  E +   VLAAV+AT NK LA+R  +  +PT
Sbjct:  116 GAFHTEYNRAVTFKSIVAFLKDPKGPPL------WEEDPGAKDVVHLDSEKDFRRLLKKEEKPLLIMFYAPWCSMCKRMMPHFQKAATQLRGHAVLAG--MNVYSSEFENIKEEYSVRGFPTICYFEKGRFLFQYDNYGSTAEDIVEWLKNPQPPQPQVPETP---WADEGGSVYHLTDEDFDQFVKEHSSVLVMFHAPWCGHCKKMKPEFEKAAEALHGEADSSGVLAAVDATVNKALAERFHISEFPT 354
The following BLAST results are available for this feature:
BLAST of TCONS_00066944 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PDIA58.541e-3941.35Protein disulfide-isomerase A5 OS=Homo sapiens GN=... [more]
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