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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066713 ID=TCONS_00066713|Name=TCONS_00066713|organism=Clytia hemisphaerica|type=transcript|length=1357bp
CTCGATAACAATCCGTAcataaacatttgaaaaagcaACACGTAACACGT
GAAAGTCAACCTTGTACCCAGAACCACTTGTACCACTTTTTAatttactg
atggacgtgatacaGTCGTGAGCGCTAttagaattttcgaaaaacatacT
AAGGGACTGGATACGAGTTTGCATGAAAGTAACTAAGCCTGAATTACATA
AACTCTACAGCAAATTTCTAAATATATACATTTTACAACGaaataaaatc
acttGAAATGTTTTTCACTTGTTTGTTGTGGGGGCTCACCCATTGTCTTt
gagaaatccaaattttggtcattggcatcaaaataaaaatctccACTCTC
ATAAGAGATAGGTGGCACATCATTACTTGTTGCATTCGAATCGTTGGGAA
TGAAGAACAATTTATTACCACCATCCTCAACGTCATTATTCTTAACCAGA
TTATTCTGATTTTTATTGTTCTCGGGTGCTATATTTTCTCGGCATATTTG
TTGATTCAATAACGATTTGGATTGTTTTCTATTGTAGACTGTCACTATCA
AAAACATTAACAGAAACACTGGTATAGAGCCAACACCGTATAATTTAAAC
GCTAAATTTGTTCCGTAATAATGTGAGAATACACCACCCCCAATGGCGCC
CACAGCACGCCCAAGACCATAATAGAATCCTTGCAAAATACCTTGAACGG
CTGCTTTATAGCCTTTCGGAGCTGCTTTACTCAAGTAACTTGTCAATGCT
GCCCATACACCGGCATGAGAGAATCCTTGTAGAATGTCTAAAGGTAATAT
CAACCAAGGATTAACAATCATTGATATGAGTAAGAATCGAACGAAATTGA
TTAGCAATCCTGCATATATGATTTGAACATGAGTTACTCGTTGCAGTAAA
GAGTCAATAAAGAAGTAAGTTAAAGTCTCTGATAAATGATCCACTGCGGA
GGAGATTCCAAATAACGAGGGAGGAGCTCCTAGATCTTCTAAATGCCAAA
ACAAGAAGACACGCGTAAGACCCATACCAAGTCCAGCATAAAAAGCAGCG
AATACAGTCGCTGTGTAATTAGGGGTTAAAAATATATGAATGACGTCACG
AGGAGTGCCATGTAAAGTCTCGTCATAATCACCAACGTCACGAAAATTGA
AACGGGTTGCTACTAGTAACGCAATACTCatgaagaataaaaagaaatag
aaTGCGTAGGTGTAATCTTTACTGATGGTCACCTCACAAACGGTGTACAT
AGGTAAAGCATCGATTGTAAATCCAACAGCAAACATAGCTGAACCCCACC
CAAGGCTACCAAACATCCTTTGACGACCATACCGATCTTTATTGTCTCCA
AGTGCAT Run BLAST on NCBI protein sequence of TCONS_00066713-protein >TCONS_00066713-protein ID=TCONS_00066713-protein|Name=TCONS_00066713-protein|organism=Clytia hemisphaerica|type=polypeptide|length=368bp
ALGDNKDRYGRQRMFGSLGWGSAMFAVGFTIDALPMYTVCEVTISKDYTY
AFYFFLFFMSIALLVATRFNFRDVGDYDETLHGTPRDVIHIFLTPNYTAT
VFAAFYAGLGMGLTRVFLFWHLEDLGAPPSLFGISSAVDHLSETLTYFFI
DSLLQRVTHVQIIYAGLLINFVRFLLISMIVNPWLILPLDILQGFSHAGV
WAALTSYLSKAAPKGYKAAVQGILQGFYYGLGRAVGAIGGGVFSHYYGTN
LAFKLYGVGSIPVFLLMFLIVTVYNRKQSKSLLNQQICRENIAPENNKNQ
NNLVKNNDVEDGGNKLFFIPNDSNATSNDVPPISYESGDFYFDANDQNLD
FSKTMGEPPQQTSEKHFK Run BLAST on NCBI transcript from alignment at scaffold_458:118983..120339 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066713 ID=TCONS_00066713|Name=TCONS_00066713|organism=Clytia hemisphaerica|type=transcript|length=1357bp|location=Sequence derived from alignment at scaffold_458:118983..120339 (Clytia hemisphaerica)
ATGCACTTGGAGACAATAAAGATCGGTATGGTCGTCAAAGGATGTTTGGT
AGCCTTGGGTGGGGTTCAGCTATGTTTGCTGTTGGATTTACAATCGATGC
TTTACCTATGTACACCGTTTGTGAGGTGACCATCAGTAAAGATTACACCT
ACGCAttctatttctttttattcttcatGAGTATTGCGTTACTAGTAGCA
ACCCGTTTCAATTTTCGTGACGTTGGTGATTATGACGAGACTTTACATGG
CACTCCTCGTGACGTCATTCATATATTTTTAACCCCTAATTACACAGCGA
CTGTATTCGCTGCTTTTTATGCTGGACTTGGTATGGGTCTTACGCGTGTC
TTCTTGTTTTGGCATTTAGAAGATCTAGGAGCTCCTCCCTCGTTATTTGG
AATCTCCTCCGCAGTGGATCATTTATCAGAGACTTTAACTTACTTCTTTA
TTGACTCTTTACTGCAACGAGTAACTCATGTTCAAATCATATATGCAGGA
TTGCTAATCAATTTCGTTCGATTCTTACTCATATCAATGATTGTTAATCC
TTGGTTGATATTACCTTTAGACATTCTACAAGGATTCTCTCATGCCGGTG
TATGGGCAGCATTGACAAGTTACTTGAGTAAAGCAGCTCCGAAAGGCTAT
AAAGCAGCCGTTCAAGGTATTTTGCAAGGATTCTATTATGGTCTTGGGCG
TGCTGTGGGCGCCATTGGGGGTGGTGTATTCTCACATTATTACGGAACAA
ATTTAGCGTTTAAATTATACGGTGTTGGCTCTATACCAGTGTTTCTGTTA
ATGTTTTTGATAGTGACAGTCTACAATAGAAAACAATCCAAATCGTTATT
GAATCAACAAATATGCCGAGAAAATATAGCACCCGAGAACAATAAAAATC
AGAATAATCTGGTTAAGAATAATGACGTTGAGGATGGTGGTAATAAATTG
TTCTTCATTCCCAACGATTCGAATGCAACAAGTAATGATGTGCCACCTAT
CTCTTATGAGAGTggagatttttattttgatgccaatgaccaaaatttgg
atttctcaAAGACAATGGGTGAGCCCCCACAACAAACAAGTGAAAAACAT
TTCaagtgattttatttCGTTGTAAAATGTATATATTTAGAAATTTGCTG
TAGAGTTTATGTAATTCAGGCTTAGTTACTTTCATGCAAACTCGTATCCA
GTCCCTTAgtatgtttttcgaaaattctaaTAGCGCTCACGACtgtatca
cgtccatcagtaaatTAAAAAGTGGTACAAGTGGTTCTGGGTACAAGGTT
GACTTTCACGTGTTACGTGTtgctttttcaaatgtttatgTACGGATTGT
TATCGAG Coding sequence (CDS) from alignment at scaffold_458:118983..120339 >TCONS_00066713 ID=TCONS_00066713|Name=TCONS_00066713|organism=Clytia hemisphaerica|type=CDS|length=1107bp|location=Sequence derived from alignment at scaffold_458:118983..120339 (Clytia hemisphaerica)
GCACTTGGAGACAATAAAGATCGGTATGGTCGTCAAAGGATGTTTGGTAG
CCTTGGGTGGGGTTCAGCTATGTTTGCTGTTGGATTTACAATCGATGCTT
TACCTATGTACACCGTTTGTGAGGTGACCATCAGTAAAGATTACACCTAC
GCAttctatttctttttattcttcatGAGTATTGCGTTACTAGTAGCAAC
CCGTTTCAATTTTCGTGACGTTGGTGATTATGACGAGACTTTACATGGCA
CTCCTCGTGACGTCATTCATATATTTTTAACCCCTAATTACACAGCGACT
GTATTCGCTGCTTTTTATGCTGGACTTGGTATGGGTCTTACGCGTGTCTT
CTTGTTTTGGCATTTAGAAGATCTAGGAGCTCCTCCCTCGTTATTTGGAA
TCTCCTCCGCAGTGGATCATTTATCAGAGACTTTAACTTACTTCTTTATT
GACTCTTTACTGCAACGAGTAACTCATGTTCAAATCATATATGCAGGATT
GCTAATCAATTTCGTTCGATTCTTACTCATATCAATGATTGTTAATCCTT
GGTTGATATTACCTTTAGACATTCTACAAGGATTCTCTCATGCCGGTGTA
TGGGCAGCATTGACAAGTTACTTGAGTAAAGCAGCTCCGAAAGGCTATAA
AGCAGCCGTTCAAGGTATTTTGCAAGGATTCTATTATGGTCTTGGGCGTG
CTGTGGGCGCCATTGGGGGTGGTGTATTCTCACATTATTACGGAACAAAT
TTAGCGTTTAAATTATACGGTGTTGGCTCTATACCAGTGTTTCTGTTAAT
GTTTTTGATAGTGACAGTCTACAATAGAAAACAATCCAAATCGTTATTGA
ATCAACAAATATGCCGAGAAAATATAGCACCCGAGAACAATAAAAATCAG
AATAATCTGGTTAAGAATAATGACGTTGAGGATGGTGGTAATAAATTGTT
CTTCATTCCCAACGATTCGAATGCAACAAGTAATGATGTGCCACCTATCT
CTTATGAGAGTggagatttttattttgatgccaatgaccaaaatttggat
ttctcaAAGACAATGGGTGAGCCCCCACAACAAACAAGTGAAAAACATTT
Caagtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066713-exon-scaffold_458-1491911889:118983..120339 | TCONS_00066713-exon-scaffold_458-1491911889:118983..120339 | Clytia hemisphaerica | exon |
| TCONS_00066713-exon-scaffold_458-1510915933:118983..120339 | TCONS_00066713-exon-scaffold_458-1510915933:118983..120339 | Clytia hemisphaerica | exon |
| TCONS_00066713-exon-scaffold_458-1575043694:118983..120339 | TCONS_00066713-exon-scaffold_458-1575043694:118983..120339 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_458 | supercontig | scaffold_458:118983..120339 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00066713 vs. Swiss-Prot (Human)
Match: MFSD6 (Major facilitator superfamily domain-containing protein 6 OS=Homo sapiens GN=MFSD6 PE=1 SV=2) HSP 1 Score: 199.134 bits (505), Expect = 9.065e-56 Identity = 121/327 (37.00%), Postives = 180/327 (55.05%), Query Frame = -3
Query: 495 LGDNKDRYGRQRMFGSLGWGSAMFAVGFTIDALPMYTVCEVTIS---------KDYTYAFYFFLFFMSIALLVATRFNFR-------------------DVGDYDETLHGTPR-----------DVIHIFLTPNYTATVFAAFYAGLGMGLTRVFLFWHLEDLGAPPSLFGISSAVDHLSETLTYFFIDSLLQRVTHVQIIYAGLLINFVRFLLISMIVNPWLILPLDILQGFSHAGVWAALTSYLSKAAPKGYKAAVQGILQGFYYXXXXXXXXXXXXVFSHYYGTNLAFKLYGVGSIPVFLLMFLI--VTVYNRKQSKSLLNQQI 1352
LG ++DRYG QRM+GSLGWG AM +VG ID YT EV I ++Y F F M++AL+VAT+F FR + + E+ TP D+I + + Y + +F A++ G G G FL+WHLEDL +LFG+ S + H+SE YFF L++ + H++++Y GL N R++ IS + N W +LP+++LQG +HA +WAA SYLS A P + + QGILQG + GLGR GA+ GGV +Y+G F+ G+ + + LL LI + V + ++ K++L ++I
Sbjct: 317 LGKHRDRYGLQRMWGSLGWGLAMLSVGIGID----YTHIEVLIDGKGCKPPEYRNYQIVFIVFGVLMTMALIVATQFRFRYNHFKNDDSKGKEVEIPQVERNNSTESSEETPTTTSHSQAFNFWDLIKLLCSVQYGSVLFVAWFMGFGYGFVFTFLYWHLEDLNGTTTLFGVCSVLSHVSELTAYFFSHKLIELIGHIRVLYIGLACNTARYIYISYLENAWTVLPMEVLQGVTHAAIWAACISYLSAAVPPELRTSAQGILQGLHLGLGRGCGAMIGGVLVNYFGAAATFRGIGMACLVILLLFALIQWLAVPDEEEDKTMLAERI 639
The following BLAST results are available for this feature:
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